BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0204.0005.p (362 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206678.1| putative periplasmic mannitol-binding protei... 626 e-177 ref|YP_001239466.1| putative periplasmic mannitol-binding protei... 624 e-177 ref|NP_770385.1| periplasmic mannitol-binding protein [Bradyrhiz... 619 e-175 ref|ZP_08629356.1| TRAP transporter solute receptor [Bradyrhizob... 483 e-134 ref|YP_001206679.1| putative periplasmic mannitol-binding protei... 475 e-132 >ref|YP_001206678.1| putative periplasmic mannitol-binding protein Trap-T transport system, dctP subunit [Bradyrhizobium sp. ORS 278] emb|CAL78461.1| putative periplasmic mannitol-binding protein; putative Trap-T transport system, dctP subunit [Bradyrhizobium sp. ORS 278] Length = 362 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 304/361 (84%), Positives = 334/361 (92%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 MKRRDFIKVTGLG AGAA IAAPAIAQSMPE+KWRM TSWPK+LDTL+GGAE+MAKMVGE Sbjct: 1 MKRRDFIKVTGLGAAGAAAIAAPAIAQSMPEIKWRMTTSWPKTLDTLHGGAEMMAKMVGE 60 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVE+GHTASYYYFGKDPTFTFGS+VPFGPNM Sbjct: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNM 120 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 RINQAWY++GGG+++LN FYK YNV SLLAGNTGCQMGGWFRKE+ SVDDL GLKFRIGG Sbjct: 121 RINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGWFRKEVNSVDDLNGLKFRIGG 180 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 FAGRVMQKLG VPQQ+AGGDIYPALEKGTIDAAEWVGPYDDE+LG KVAPHYY+PGWWE Sbjct: 181 FAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE 240 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGPMLL+ +NL+KWNALPK+YQ +LEQAGH+ANNWMMAKYD NP AL++L+A GAKLH Sbjct: 241 GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHP 300 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFMARHA 360 FPAPVMEASFKAAKELH EV+ATN +FKK ESL +++ GY WFQVAEVGYDNFMAR + Sbjct: 301 FPAPVMEASFKAAKELHAEVAATNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRS 360 Query: 361 Q 361 Q Sbjct: 361 Q 361 >ref|YP_001239466.1| putative periplasmic mannitol-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ35560.1| putative periplasmic mannitol-binding protein [Bradyrhizobium sp. BTAi1] Length = 362 Score = 624 bits (1608), Expect = e-177, Method: Compositional matrix adjust. Identities = 302/361 (83%), Positives = 333/361 (92%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 MKRRDFIKVTGLG AGAA IA+PAIAQS+PE+KWRM TSWPKSLDTL+GGAE+MAKMV E Sbjct: 1 MKRRDFIKVTGLGAAGAAAIASPAIAQSLPEIKWRMTTSWPKSLDTLHGGAEMMAKMVSE 60 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVE+GHTASYYYFGKDPTFTFGS+VPFGPNM Sbjct: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEMGHTASYYYFGKDPTFTFGSSVPFGPNM 120 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 RINQAWY++GGG+++LN FYK YNV SLLAGNTGCQMGGWFRKEI SVDDL GLKFRIGG Sbjct: 121 RINQAWYLMGGGKEILNEFYKSYNVTSLLAGNTGCQMGGWFRKEINSVDDLNGLKFRIGG 180 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 FAGRVMQKLG VPQQ+AGGDIYPALEKGTIDAAEWVGPYDDE+LG KVAPHYY+PGWWE Sbjct: 181 FAGRVMQKLGCVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGLFKVAPHYYFPGWWE 240 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGPMLL+ +NL+KWNALPK+YQ +LEQAGH+ANNWMMAKYD NP AL++L+A GAKLH Sbjct: 241 GGPMLLAMINLEKWNALPKHYQKLLEQAGHFANNWMMAKYDSANPLALRKLIAGGAKLHP 300 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFMARHA 360 FPAPVMEASFKAAKELH EV+A+N +FKK ESL +++ GY WFQVAEVGYDNFMAR + Sbjct: 301 FPAPVMEASFKAAKELHAEVAASNPNFKKALESLTAYSGAGYSWFQVAEVGYDNFMARRS 360 Query: 361 Q 361 Q Sbjct: 361 Q 361 >ref|NP_770385.1| periplasmic mannitol-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49010.1| periplasmic mannitol-binding protein [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 307/361 (85%), Positives = 332/361 (91%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 MKRRDFIKVTGLG AGAAT+AAPAIAQSMPE+KWRMPTSWPKSLDTL+GGAE+M KMV E Sbjct: 21 MKRRDFIKVTGLGAAGAATLAAPAIAQSMPEIKWRMPTSWPKSLDTLFGGAEMMCKMVAE 80 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 ATDNKFQIQ FAAGEIVPGLQVLDAVQN T EIGHTASYYYFGKDPTFTFGSAVPFGPNM Sbjct: 81 ATDNKFQIQIFAAGEIVPGLQVLDAVQNATCEIGHTASYYYFGKDPTFTFGSAVPFGPNM 140 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 RINQAWYM GGGR++LN FYK YNVVSLLAGNTGCQMGGWFRKE+ + +DLKG+KFRIGG Sbjct: 141 RINQAWYMQGGGREVLNEFYKSYNVVSLLAGNTGCQMGGWFRKEVNTPEDLKGMKFRIGG 200 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 FAGRV+QKLG VPQQ+AGGDIYPALEKGTIDAAEWVGPYDDE+LGF K+APHYYYPGWWE Sbjct: 201 FAGRVLQKLGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKIAPHYYYPGWWE 260 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGPMLL+FVNLDKWNALPKYYQSVLEQAGHYANN+MMA+YD NP ALK+LLA GAKLHA Sbjct: 261 GGPMLLAFVNLDKWNALPKYYQSVLEQAGHYANNYMMARYDTANPLALKKLLANGAKLHA 320 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFMARHA 360 F P+MEA +KAAKELH EV ATNA+FKKV++SL F +GY WFQVAEVGYD FMAR + Sbjct: 321 FSPPIMEACYKAAKELHAEVGATNANFKKVHDSLAKFTGDGYAWFQVAEVGYDIFMARRS 380 Query: 361 Q 361 Q Sbjct: 381 Q 381 >ref|ZP_08629356.1| TRAP transporter solute receptor [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07849.1| TRAP transporter solute receptor [Bradyrhizobiaceae bacterium SG-6C] Length = 362 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 235/358 (65%), Positives = 285/358 (79%), Gaps = 1/358 (0%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 MKRR+FIK+ G+G A A +A+PAIAQSMPE+KWR+ +S+PKSLDT+YG AEV +K V E Sbjct: 1 MKRREFIKIAGIGAA-GAAVASPAIAQSMPEIKWRLTSSFPKSLDTIYGAAEVFSKAVAE 59 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 ATDN+FQIQ FAAGEIVPGLQ LDA NGTVE+ HTA+YYY GKDPTF G+AVPFG N Sbjct: 60 ATDNRFQIQVFAAGEIVPGLQALDAASNGTVEMAHTATYYYIGKDPTFAIGTAVPFGLNS 119 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 R+ AW +GGG ++ N F K +NVV+LLAGNTGCQMGGW+RKE+ DL GLK RIGG Sbjct: 120 RMQTAWLQVGGGAELFNDFLKPHNVVALLAGNTGCQMGGWYRKELKDPKDLSGLKMRIGG 179 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 FAG+V+ KLG VPQQ+AGGDIYP+LEKGTIDAAEWVGPYDDE+LGF KVA +YYYPGWWE Sbjct: 180 FAGQVLTKLGVVPQQVAGGDIYPSLEKGTIDAAEWVGPYDDEKLGFQKVAKYYYYPGWWE 239 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGP L + VNL KW ALP Y+S+L+ A AN M A+YD NPPALKRL+A G +L Sbjct: 240 GGPSLHNLVNLAKWEALPAGYKSILKTASSLANETMQARYDAYNPPALKRLVAGGTQLRP 299 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFMAR 358 FP+ +MEAS KAA E++ E SA NA+FKK+YE++ +F ++ Y W+QVAE +D+F R Sbjct: 300 FPSSIMEASLKAANEVYKETSAKNANFKKLYEAMAAFRNDQYTWWQVAEYSFDSFQIR 357 >ref|YP_001206679.1| putative periplasmic mannitol-binding protein Trap-T transport system, dctP subunit [Bradyrhizobium sp. ORS 278] emb|CAL78462.1| putative periplasmic mannitol-binding protein; putative Trap-T transport system, dctP subunit [Bradyrhizobium sp. ORS 278] Length = 363 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 230/358 (64%), Positives = 273/358 (76%) Query: 1 MKRRDFIKVTGLGVAGAATIAAPAIAQSMPELKWRMPTSWPKSLDTLYGGAEVMAKMVGE 60 MKRRDF+KV+ G A IA+PAIAQS PE+KWR+ +S+PKSLDT+YGGA +AK V E Sbjct: 1 MKRRDFLKVSAAGAAATGAIASPAIAQSAPEIKWRLTSSFPKSLDTIYGGATELAKYVAE 60 Query: 61 ATDNKFQIQTFAAGEIVPGLQVLDAVQNGTVEIGHTASYYYFGKDPTFTFGSAVPFGPNM 120 TDNKFQIQ FAAGEIVPGLQ LDA NGTVE+ HT SYYY GKDPTF ++VPFG N Sbjct: 61 MTDNKFQIQVFAAGEIVPGLQALDATSNGTVEMCHTVSYYYVGKDPTFAIFASVPFGLNA 120 Query: 121 RINQAWYMLGGGRDMLNTFYKKYNVVSLLAGNTGCQMGGWFRKEIASVDDLKGLKFRIGG 180 R +W GGG ++ N FYKK+ V+ GNTG QMGGWFRKEI +V DL GLKFRIGG Sbjct: 121 RQQNSWLYQGGGNELANEFYKKFGVIGFPCGNTGTQMGGWFRKEIKTVADLSGLKFRIGG 180 Query: 181 FAGRVMQKLGAVPQQIAGGDIYPALEKGTIDAAEWVGPYDDERLGFVKVAPHYYYPGWWE 240 AG+V+QKLG VPQQ+AGGDIYPALEKGTIDAAEWVGPYDDE+LGF KVA +YYYPG+WE Sbjct: 181 IAGQVLQKLGVVPQQLAGGDIYPALEKGTIDAAEWVGPYDDEKLGFQKVAKYYYYPGFWE 240 Query: 241 GGPMLLSFVNLDKWNALPKYYQSVLEQAGHYANNWMMAKYDQTNPPALKRLLAAGAKLHA 300 GGP + ++ NLDKWN+LPK YQ++L A AN WM A+YDQ NP ALKRL+A G +L Sbjct: 241 GGPTVHAYTNLDKWNSLPKNYQAILTNATMAANTWMAARYDQQNPSALKRLVAGGTQLRP 300 Query: 301 FPAPVMEASFKAAKELHNEVSATNADFKKVYESLNSFASNGYQWFQVAEVGYDNFMAR 358 F V+EA KA EL E+SA N DFKK +++ ++ S+ Y W+QVAE YD+FM R Sbjct: 301 FTNEVLEACLKATNELWGEISAKNPDFKKSIDAMQAYRSDEYLWWQVAEYTYDSFMIR 358