BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0053.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767752.1| transcriptional regulator [Bradyrhizobium japon... 406 e-111 ref|YP_004154874.1| AraC family transcriptional regulator [Vario... 357 1e-96 ref|YP_001208578.1| AraC family transcriptional regulator [Brady... 354 1e-95 ref|YP_001236944.1| AraC family transcriptional regulator [Brady... 352 4e-95 ref|YP_001611544.1| AraC family transcriptional regulator [Soran... 346 3e-93 >ref|NP_767752.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC46377.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 279 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/279 (70%), Positives = 224/279 (80%) Query: 1 MVRTTLLQRDRITVNEFRCTAEPGDKPFAEQFASHSVSYVRSGSFGCHCRGRFHELVAGS 60 M TTLL ITV+EFRC A P D PFAE HS++YVRSGSFGCHCR F ELVAGS Sbjct: 1 MDATTLLTTRSITVSEFRCDAGPDDTPFAECRTGHSIAYVRSGSFGCHCRAGFFELVAGS 60 Query: 61 ILVGHPGDEYTCTHDHVVGDECLSFFLDPELVETIGDRATVWQVGSVPPLSELMVIGELA 120 ILVG PG+EYTCTH+HV GD CL FF +LV+ +G R +W+VG+ PPL ELMV+GELA Sbjct: 61 ILVGAPGEEYTCTHEHVSGDVCLGFFFSEDLVDALGGRHEIWKVGATPPLPELMVLGELA 120 Query: 121 QTAADGNSDVGLDEIGHLLTSRLVELVSDRKAKPLTAGLRDRRRAVEAALWIDANSHHQI 180 QTAADGNSD+GLDEIG +L R V++VS + KP T RDRRRAVEAALWIDANSH ++ Sbjct: 121 QTAADGNSDLGLDEIGQILAGRFVDVVSGKARKPATPTARDRRRAVEAALWIDANSHAEV 180 Query: 181 DLDDAAEQAGLSTFHFLRLFSAVLGVTPHQYLVRSRLRHAARRLADDDSPITDIAYDVGF 240 DL+ AA AGLS FHFLRLFSAVLGVTPHQYLVRSRLRHAAR L +DD +TD+AYDVGF Sbjct: 181 DLEQAARHAGLSPFHFLRLFSAVLGVTPHQYLVRSRLRHAARLLTEDDIAVTDVAYDVGF 240 Query: 241 GDLSNFVRSFHRAAGASPLKFRQASRGDRKIFQERLALQ 279 GDLSNFVR+FHRAAG SP KFRQAS+G+R+IF ERL L Sbjct: 241 GDLSNFVRTFHRAAGVSPTKFRQASKGERRIFGERLVLN 279 >ref|YP_004154874.1| AraC family transcriptional regulator [Variovorax paradoxus EPS] gb|ADU36763.1| transcriptional regulator, AraC family [Variovorax paradoxus EPS] Length = 304 Score = 357 bits (916), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 178/279 (63%), Positives = 208/279 (74%), Gaps = 3/279 (1%) Query: 1 MVRTTLLQRDRITVNEFRCTAEPGDKPFAEQFASHSVSYVRSGSFGCHCRGRFHELVAGS 60 M+ TT LQ D I V+ +RC A PG F E +SVSYVR GSFG RG +ELVAGS Sbjct: 1 MLITTELQTDPIRVSSYRCDAGPGAPSFTEMHEDYSVSYVRKGSFGYRTRGNAYELVAGS 60 Query: 61 ILVGHPGDEYTCTHDH-VVGDECLSFFLDPELVETIGDRATVWQVGSVPPLSELMVIGEL 119 +LVG PGDEY CTHDH + GDECL+F L P V+ IG W+ +PPL ELMV+GEL Sbjct: 61 VLVGCPGDEYVCTHDHHICGDECLAFHLSPGFVDLIGGGKQTWRTAGLPPLPELMVLGEL 120 Query: 120 AQTAADGNSDVGLDEIGHLLTSRLVELVSDR--KAKPLTAGLRDRRRAVEAALWIDANSH 177 AQ AA+G SD+GLDE+G SR VE+V R P +A RDRRRAV+AA+WIDANSH Sbjct: 121 AQVAAEGESDIGLDELGMWFASRFVEVVGGRGKPPSPQSAAPRDRRRAVDAAIWIDANSH 180 Query: 178 HQIDLDDAAEQAGLSTFHFLRLFSAVLGVTPHQYLVRSRLRHAARRLADDDSPITDIAYD 237 I L+ AA +AGLS+FHFLRLFS VLGVTPHQYLVRSRLRHAAR LADDD P+TD+A+D Sbjct: 181 DDIGLEGAASEAGLSSFHFLRLFSQVLGVTPHQYLVRSRLRHAARLLADDDRPVTDVAFD 240 Query: 238 VGFGDLSNFVRSFHRAAGASPLKFRQASRGDRKIFQERL 276 VGF DLSNF R+FHRAAG SP FRQA++GDRKI Q+R+ Sbjct: 241 VGFADLSNFTRTFHRAAGVSPRGFRQAAKGDRKILQDRM 279 >ref|YP_001208578.1| AraC family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL80363.1| putative transcriptional regulatory protein, AraC family [Bradyrhizobium sp. ORS 278] Length = 280 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 176/277 (63%), Positives = 213/277 (76%) Query: 1 MVRTTLLQRDRITVNEFRCTAEPGDKPFAEQFASHSVSYVRSGSFGCHCRGRFHELVAGS 60 M T L + V+EFRC A G++PFAEQ+A +S+SYVR GSFGCH RGRF ELV G+ Sbjct: 1 MTATLLFDSPSLAVSEFRCAATVGEQPFAEQYAGYSLSYVRKGSFGCHHRGRFFELVTGA 60 Query: 61 ILVGHPGDEYTCTHDHVVGDECLSFFLDPELVETIGDRATVWQVGSVPPLSELMVIGELA 120 +LVG+PGDE+ CTHDHV GDECLSFF D +VE +G VWQ G+VPPL +LMV+GELA Sbjct: 61 LLVGYPGDEFMCTHDHVCGDECLSFFFDDAVVEEVGGGKQVWQTGAVPPLPQLMVLGELA 120 Query: 121 QTAADGNSDVGLDEIGHLLTSRLVELVSDRKAKPLTAGLRDRRRAVEAALWIDANSHHQI 180 Q + VGLDEIG+++ SR VE VS +P LRDRRRAV++ALWID NS H I Sbjct: 121 QAVTARDQTVGLDEIGYVIASRFVEAVSGEATRPEPLSLRDRRRAVDSALWIDDNSEHDI 180 Query: 181 DLDDAAEQAGLSTFHFLRLFSAVLGVTPHQYLVRSRLRHAARRLADDDSPITDIAYDVGF 240 L DAA +AG+S FHFLRLF+A +GVTPHQYL+R+RLR AARRL++ D+P+T IAYD GF Sbjct: 181 ALADAAREAGVSPFHFLRLFAATIGVTPHQYLIRTRLRRAARRLSESDTPVTTIAYDTGF 240 Query: 241 GDLSNFVRSFHRAAGASPLKFRQASRGDRKIFQERLA 277 DLSNF R+F RAAG SPLKFR+ASRGDRKIFQ+R+ Sbjct: 241 ADLSNFTRTFTRAAGLSPLKFRKASRGDRKIFQDRIG 277 >ref|YP_001236944.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ33038.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 278 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 164/276 (59%), Positives = 206/276 (74%), Gaps = 1/276 (0%) Query: 1 MVRTTLLQRDRITVNEFRCTAEPGDKPFAEQFASHSVSYVRSGSFGCHCRGRFHELVAGS 60 M T L + +TV+EFRC A G +PF EQ+ +S+SYVR GSFGCH RGR ELV G+ Sbjct: 1 MAATILFESRDVTVSEFRCEAARGARPFVEQYGGYSLSYVRKGSFGCHHRGRLFELVTGA 60 Query: 61 ILVGHPGDEYTCTHDHVVGDECLSFFLDPELVETIGDRATVWQVGSVPPLSELMVIGELA 120 +LVG+PGDE+ CTHDHV GDECLSF D +++ IG WQ G++PPL E + +GELA Sbjct: 61 LLVGYPGDEFMCTHDHVCGDECLSFSFDGAVIDDIGG-GQAWQAGAIPPLPEFIALGELA 119 Query: 121 QTAADGNSDVGLDEIGHLLTSRLVELVSDRKAKPLTAGLRDRRRAVEAALWIDANSHHQI 180 Q A +GLDE+GH++ R V +V+ R+ +P LRDRRRAVE+ALWID N+H I Sbjct: 120 QAIAAQKQTLGLDEVGHMIAGRFVAIVTGREERPARPSLRDRRRAVESALWIDDNAHEDI 179 Query: 181 DLDDAAEQAGLSTFHFLRLFSAVLGVTPHQYLVRSRLRHAARRLADDDSPITDIAYDVGF 240 +L + A AG+S FHFLRLF+A +GVTPHQYL+RSRLR AA+RL+ +D+ +TDIAYDVGF Sbjct: 180 NLAETARAAGISPFHFLRLFAATIGVTPHQYLIRSRLRRAAQRLSAEDTSVTDIAYDVGF 239 Query: 241 GDLSNFVRSFHRAAGASPLKFRQASRGDRKIFQERL 276 DLSNF R+F RA G SPLKFR+ASRG+RKI QERL Sbjct: 240 ADLSNFTRTFTRAVGVSPLKFRRASRGERKILQERL 275 >ref|YP_001611544.1| AraC family transcriptional regulator [Sorangium cellulosum 'So ce 56'] emb|CAN91064.1| transcriptional regulator, AraC family [Sorangium cellulosum 'So ce 56'] Length = 280 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 182/274 (66%), Positives = 216/274 (78%) Query: 4 TTLLQRDRITVNEFRCTAEPGDKPFAEQFASHSVSYVRSGSFGCHCRGRFHELVAGSILV 63 TTL++ D I+V ++RC + PGD PFAE SVSYVR GSFG RG ELVAGS+LV Sbjct: 4 TTLVRGDAISVVDYRCRSGPGDAPFAELHRGFSVSYVRKGSFGYRVRGEVFELVAGSLLV 63 Query: 64 GHPGDEYTCTHDHVVGDECLSFFLDPELVETIGDRATVWQVGSVPPLSELMVIGELAQTA 123 GHPGDEYTC+H+HVVGDECLSF L P LVE +GD A ++ G +PP+ ELMV+GELAQ A Sbjct: 64 GHPGDEYTCSHEHVVGDECLSFQLAPALVEALGDGAGAFRAGGLPPVPELMVLGELAQAA 123 Query: 124 ADGNSDVGLDEIGHLLTSRLVELVSDRKAKPLTAGLRDRRRAVEAALWIDANSHHQIDLD 183 A+G SD+G+DE+G LL +R VE+ S RK +P G RDRRRAVEAALW+D ++H IDL+ Sbjct: 124 AEGRSDIGVDEVGVLLAARFVEVASGRKRRPPDTGARDRRRAVEAALWLDEHAHEPIDLE 183 Query: 184 DAAEQAGLSTFHFLRLFSAVLGVTPHQYLVRSRLRHAARRLADDDSPITDIAYDVGFGDL 243 AA +AGLS FHFLR+F V+GVTPHQYLVR+RLR AAR LAD ITDIA DVGFGDL Sbjct: 184 GAAREAGLSPFHFLRVFGKVVGVTPHQYLVRARLRRAARLLADGARSITDIALDVGFGDL 243 Query: 244 SNFVRSFHRAAGASPLKFRQASRGDRKIFQERLA 277 SNFVR+FHRAAG SP FR+A+RGDRKIFQ+RLA Sbjct: 244 SNFVRTFHRAAGVSPRGFRKAARGDRKIFQDRLA 277