BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0041.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773657.1| transcriptional regulator [Bradyrhizobium japon... 310 1e-82 ref|YP_001242095.1| LuxR family transcriptional regulator [Brady... 301 7e-80 ref|YP_001207643.1| LuxR family transcriptional regulator [Brady... 293 2e-77 ref|ZP_08636871.1| transcriptional regulator [Halomonas sp. TD01... 105 9e-21 ref|YP_001263895.1| LuxR family transcriptional regulator [Sphin... 104 1e-20 >ref|NP_773657.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52282.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 260 Score = 310 bits (795), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 161/252 (63%), Positives = 181/252 (71%), Gaps = 5/252 (1%) Query: 14 DITPALLAIGRHTFPEALIGALRRVAGVGHCMVFSFTGPRTAACLLDVGNIPTGRDLGIA 73 D+TPA+LAIGR FP LI LRR A VGHCMVF+ + CLLD GNIP G DLG A Sbjct: 14 DVTPAVLAIGRPDFPSVLIDTLRRQADVGHCMVFALSRAGATHCLLDAGNIPIGGDLGAA 73 Query: 74 YSEHFHQADPNRDAVFEGRMQAAPIVLPNFARRMYSDGYRKIFFDDSDIVDKFASAIWTG 133 Y+ FH++DPNRDA+FEG A IVLP FA RMY YRKIFF+DS IVDK A+AIW Sbjct: 74 YAGQFHESDPNRDALFEGE-GGASIVLPTFAPRMYGARYRKIFFNDSGIVDKCATAIWVE 132 Query: 134 DTCFYVNFYQITAQGRFSREQIARLAAVAPALTAAVARHFQPDPAADVDPIERLKILFAT 193 DTCFYVNFY+I AQGRFS Q RL A+APA+ A+VARHFQ P + L LFAT Sbjct: 133 DTCFYVNFYRIAAQGRFSDAQRERLQAIAPAIGASVARHFQ----RSATPDQSLAALFAT 188 Query: 194 AEPLARLTGREKEVCLRILSGLSSEAIAAELGIGLHSALTYRKRAYDKLGISSQNELFAI 253 PLA LT RE+EVC RIL G SSEAI+ LGI LHS LTYRKRAY +LGISSQNELF+I Sbjct: 189 HAPLADLTPREREVCRRILEGFSSEAISQALGISLHSTLTYRKRAYGRLGISSQNELFSI 248 Query: 254 ALRLMASARQLN 265 LRL+A LN Sbjct: 249 VLRLLAGPSGLN 260 >ref|YP_001242095.1| LuxR family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38189.1| transcriptional regulator, LuxR family [Bradyrhizobium sp. BTAi1] Length = 262 Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 158/251 (62%), Positives = 191/251 (76%), Gaps = 2/251 (0%) Query: 15 ITPALLAIGRHTFPEALIGALRRVAGVGHCMVFSFTGPRTAACLLDVGNIPTGRDLGIAY 74 ++ +LAIG+ +FP+ LI +LR +AGVGHCMVF+F RTA CLL GNI G DLG AY Sbjct: 14 VSAMVLAIGQPSFPDVLIDSLRTIAGVGHCMVFTFADQRTARCLLSTGNIAIGPDLGAAY 73 Query: 75 SEHFHQADPNRDAVFEGRMQAAPIVLPNFARRMYSDGYRKIFFDDSDIVDKFASAIWTGD 134 SEHFH ADPNR+A+F+ R +A I+LPNFARRMY GYRK+FF+DS+IVDK A+AIW GD Sbjct: 74 SEHFHTADPNREAIFQ-RAKAQHILLPNFARRMYPRGYRKLFFEDSEIVDKAATAIWVGD 132 Query: 135 TCFYVNFYQITAQGRFSREQIARLAAVAPALTAAVARHFQPDPAADVDPIERLKILFATA 194 C YVNFY+ AQG F+ ++ R+ AVAP + A VARH Q + AA DP ++L LFA Sbjct: 133 HCTYVNFYRTAAQGGFAADERQRITAVAPVVAAIVARHCQ-EHAAVADPADKLASLFAAG 191 Query: 195 EPLARLTGREKEVCLRILSGLSSEAIAAELGIGLHSALTYRKRAYDKLGISSQNELFAIA 254 PL+ LT REK+VC RIL G SSEAIA ELGI L+S TYRKRAY+KLGI+SQNELFAIA Sbjct: 192 GPLSVLTAREKDVCRRILDGFSSEAIAGELGIALNSVFTYRKRAYEKLGIASQNELFAIA 251 Query: 255 LRLMASARQLN 265 LRLM + R LN Sbjct: 252 LRLMTAPRPLN 262 >ref|YP_001207643.1| LuxR family transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79426.1| putative transcriptional regulatory protein (HTH-type), LuxR family [Bradyrhizobium sp. ORS 278] Length = 263 Score = 293 bits (749), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/247 (61%), Positives = 181/247 (73%), Gaps = 1/247 (0%) Query: 19 LLAIGRHTFPEALIGALRRVAGVGHCMVFSFTGPRTAACLLDVGNIPTGRDLGIAYSEHF 78 +LAIG+ +FP LI LR VA VGHCMVFSF R+A CLL GNI G DLG AYSEHF Sbjct: 18 VLAIGQPSFPAVLIDTLRAVADVGHCMVFSFADQRSARCLLSTGNIAIGPDLGTAYSEHF 77 Query: 79 HQADPNRDAVFEGRMQAAPIVLPNFARRMYSDGYRKIFFDDSDIVDKFASAIWTGDTCFY 138 H ADPNR+ +F R I+LP+FARRMY GYRK+FF+DS+IVDK A+AIW GD C Y Sbjct: 78 HTADPNREVIFRERGAQRHILLPHFARRMYPRGYRKLFFEDSEIVDKAATAIWVGDHCTY 137 Query: 139 VNFYQITAQGRFSREQIARLAAVAPALTAAVARHFQPDPAADVDPIERLKILFATAEPLA 198 VNFY+ AQG F+REQ R+ A AP + A VARH Q D A +P ++L LFA PL+ Sbjct: 138 VNFYRTAAQGGFTREQRQRITAAAPIVAAIVARHCQAD-ATMQNPADKLARLFAEGGPLS 196 Query: 199 RLTGREKEVCLRILSGLSSEAIAAELGIGLHSALTYRKRAYDKLGISSQNELFAIALRLM 258 LT REK+VC RIL G +SEAIA +LGI L+S TYRKRAY+KLGI+SQNELFAIALRLM Sbjct: 197 VLTAREKDVCRRILEGFTSEAIAGDLGIALNSVFTYRKRAYEKLGIASQNELFAIALRLM 256 Query: 259 ASARQLN 265 + + LN Sbjct: 257 TAQKPLN 263 >ref|ZP_08636871.1| transcriptional regulator [Halomonas sp. TD01] gb|EGP19873.1| transcriptional regulator [Halomonas sp. TD01] Length = 261 Score = 105 bits (261), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/251 (30%), Positives = 121/251 (48%), Gaps = 15/251 (5%) Query: 10 SVVSDITPALLAIGRHTFPEALIGALRRVAGVGHCMVFSFTGPRTAACLLDVGN-IPTGR 68 +++ + + A+ R F L+ L + G+ CM+F ++ CLL + +P Sbjct: 14 NLLPSVATCIEAVERDNFESQLLALLHQAVGIEQCMIFGYSTSGNIDCLLAANHQLPRVA 73 Query: 69 D-LGIAYSEHFHQADPNRDAVFEGRMQAAPI-----VLPNFARRMYSDGYRKIFFDDSDI 122 D L Y + DPN + R+ P L S YR F D+ Sbjct: 74 DRLAQIYVSGLFRQDPNYLQL--SRLAGQPENTSTDALTTMQVEAMSPAYRSHLFAFPDL 131 Query: 123 VDKFASAIWTGDTCFYVNFYQITAQGRFSREQIARLAAVAPALTAAVARHFQPDPAADVD 182 VDK + I + +Y+N Y+ T +G F+ + L ++AP LT+ + RH+ PA Sbjct: 132 VDKVSLNIAAKEGAYYLNLYRGTRRGPFTSANLNCLNSLAPLLTSLIRRHYSNAPARP-- 189 Query: 183 PIERLKILFATAEPLARLTGREKEVCLRILSGLSSEAIAAELGIGLHSALTYRKRAYDKL 242 E+L A A LA L+ RE+++CL +L G + + AA+L I + TYRKRAY KL Sbjct: 190 --EQLSSREAAA--LAPLSERERQLCLYLLRGHTLKTAAAKLDIAFSTTETYRKRAYAKL 245 Query: 243 GISSQNELFAI 253 G++S+ L A+ Sbjct: 246 GVTSKAGLVAL 256 >ref|YP_001263895.1| LuxR family transcriptional regulator [Sphingomonas wittichii RW1] gb|ABQ69757.1| transcriptional regulator, LuxR family [Sphingomonas wittichii RW1] Length = 290 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 115/245 (46%), Gaps = 17/245 (6%) Query: 19 LLAIGRHTFPEALIGALRRVAGVGHCMVFSFTGPRTAACLLDVGNIPTGRDLGIA----- 73 +L IG F L A+ + H + F+ T + L I + RD A Sbjct: 48 ILTIGTPRFTHHLHHAIGSLLPTSHVTIVEFSPALTPSIFL----ISSMRDEERAAQSAR 103 Query: 74 -YSEHFHQADPNRDAVFE-GRMQAAPIVLPNFARRMYSDGYRKIFFDDSDIVDKFASAIW 131 Y + F++ DPN A+ E + +A IV P+ +S YR FF D I DK Sbjct: 104 EYFDEFYKYDPNYSAIGEIAQTKAMSIVHPDCND--FSKFYRNRFFSDQKISDKLTIINE 161 Query: 132 TGDTCFYVNFYQITAQGRFSREQIARLAAVAPALTAAVARHFQPDPAADVDPIERLKILF 191 + N Y+ G F+ +I + +AP ++AAV+RH Q A + I+ I++ Sbjct: 162 NNGSIISSNIYKDQDNGMFTAAEIDNITMLAPIISAAVSRHCQ---ALSLARIDLDMIIY 218 Query: 192 ATAEPLA-RLTGREKEVCLRILSGLSSEAIAAELGIGLHSALTYRKRAYDKLGISSQNEL 250 A A A T RE +VC IL G SSEAI LGI S +T+RK Y KL I SQ EL Sbjct: 219 AMAAKQAISFTARENDVCRGILRGQSSEAIGLSLGIATSSVITHRKNLYRKLNIVSQAEL 278 Query: 251 FAIAL 255 F+ A Sbjct: 279 FSQAF 283