BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0037.p (229 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_575573.1| RNA polymerase sigma factor [Nitrobacter hambur... 347 7e-94 ref|NP_769197.1| RNA polymerase sigma factor [Bradyrhizobium jap... 324 7e-87 ref|YP_004143821.1| sigma-70 family RNA polymerase sigma factor ... 283 1e-74 ref|YP_004613664.1| ECF subfamily RNA polymerase sigma-24 subuni... 276 2e-72 ref|YP_001243250.1| RNA polymerase sigma factor [Bradyrhizobium ... 274 8e-72 >ref|YP_575573.1| RNA polymerase sigma factor [Nitrobacter hamburgensis X14] gb|ABE61113.1| sigma-24 (FecI-like) [Nitrobacter hamburgensis X14] Length = 230 Score = 347 bits (891), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 170/214 (79%), Positives = 195/214 (91%), Gaps = 1/214 (0%) Query: 16 DAELVQRALARDEAAIRAIMQANNRRLFRLARGILRNDHEAEDVVQDAYVRAFTHLDQFR 75 D EL++RA ARDE+AIRAIMQANNR+L+R+ARGILRND EAEDVVQ+ YVRAFTHL+ FR Sbjct: 16 DDELIRRARARDESAIRAIMQANNRKLYRIARGILRNDGEAEDVVQETYVRAFTHLESFR 75 Query: 76 GESSLSTWLSRIAMNEALGRLRRRHSSVEWSDLPKGAPEAQIIQFPLSS-TDDPEKSMAQ 134 GES L+TWL+RIAMNEALGRLRR+H SV+W+ L A +A+IIQFP+S+ ++DPEK+MAQ Sbjct: 76 GESRLATWLARIAMNEALGRLRRQHPSVDWTTLEPVASDARIIQFPVSAISEDPEKTMAQ 135 Query: 135 REIQHVVEHAIDELPEAFRLVFITRVIEGMNVEETAEILGLKPETVKTRLHRARTMLRDN 194 REIQH+VEHA+DELPEAFR+VFITRVIEGMNVEETAEIL LKPETVKTRLHRARTMLR N Sbjct: 136 REIQHIVEHAVDELPEAFRIVFITRVIEGMNVEETAEILDLKPETVKTRLHRARTMLRAN 195 Query: 195 VERKIGPVVMEAFPFAGKRCERLTEAVLKRLRAT 228 VE+KIGPVVMEAFPFAGKRC RLT+AVL RL T Sbjct: 196 VEKKIGPVVMEAFPFAGKRCARLTDAVLGRLGLT 229 >ref|NP_769197.1| RNA polymerase sigma factor [Bradyrhizobium japonicum USDA 110] dbj|BAC47822.1| blr2557 [Bradyrhizobium japonicum USDA 110] Length = 246 Score = 324 bits (830), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 157/212 (74%), Positives = 184/212 (86%) Query: 14 SGDAELVQRALARDEAAIRAIMQANNRRLFRLARGILRNDHEAEDVVQDAYVRAFTHLDQ 73 + +AELV RA RDE+A+R IMQANNRRL+RLARGILR+D EAEDVVQ+ YVRAFTHLD Sbjct: 31 ASEAELVDRARGRDESALREIMQANNRRLYRLARGILRSDSEAEDVVQETYVRAFTHLDG 90 Query: 74 FRGESSLSTWLSRIAMNEALGRLRRRHSSVEWSDLPKGAPEAQIIQFPLSSTDDPEKSMA 133 FRGES LSTWLSRIA+NEALGR R VE S +P+ A EAQII+FP+S DPE++MA Sbjct: 91 FRGESGLSTWLSRIAINEALGRARSARPHVELSSVPEAALEAQIIKFPVSPAGDPERTMA 150 Query: 134 QREIQHVVEHAIDELPEAFRLVFITRVIEGMNVEETAEILGLKPETVKTRLHRARTMLRD 193 QREIQ VVE AIDELP+ FR+VFI RV+EGMN+EETA++LG+KPETVKTRLHRARTMLR+ Sbjct: 151 QREIQRVVERAIDELPDVFRMVFIARVMEGMNIEETADLLGVKPETVKTRLHRARTMLRE 210 Query: 194 NVERKIGPVVMEAFPFAGKRCERLTEAVLKRL 225 NVE++IGPV+M+AFPFAG RCERLT +VLKRL Sbjct: 211 NVEKEIGPVMMDAFPFAGWRCERLTVSVLKRL 242 >ref|YP_004143821.1| sigma-70 family RNA polymerase sigma factor [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV13771.1| RNA polymerase sigma factor, sigma-70 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 224 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 131/222 (59%), Positives = 184/222 (82%), Gaps = 4/222 (1%) Query: 4 AHVTSLPPTSSGDAELVQRALARDEAAIRAIMQANNRRLFRLARGILRNDHEAEDVVQDA 63 A +T++P G+ +LV RALARD A R I++ +N+RL+R+ARG++RND EAED+VQ+A Sbjct: 3 AVLTAVPSAVPGEMQLVHRALARDGDAFRTIIKTHNQRLYRIARGVVRNDSEAEDIVQEA 62 Query: 64 YVRAFTHLDQFRGESSLSTWLSRIAMNEALGRLRRRHSSVEWSDLPKGAPEAQIIQFPLS 123 YV+AF HLD FRG+SSL+TWLSRI +NEALGRLR+R +V LP+ P+A+II+FPL+ Sbjct: 63 YVKAFAHLDAFRGDSSLATWLSRIVINEALGRLRKRRKTVA---LPEN-PQAEIIRFPLN 118 Query: 124 STDDPEKSMAQREIQHVVEHAIDELPEAFRLVFITRVIEGMNVEETAEILGLKPETVKTR 183 +DDPE++MAQR+I +VE A D LP+ +R VF+ RVIEG+++EETA++LG++P+TVKTR Sbjct: 119 PSDDPERTMAQRQILQLVEQATDSLPDVYRTVFVARVIEGLSIEETADLLGVRPQTVKTR 178 Query: 184 LHRARTMLRDNVERKIGPVVMEAFPFAGKRCERLTEAVLKRL 225 LHRAR ++R ++ +IGPV+++AFPFAG+RCERLT AV++RL Sbjct: 179 LHRARALVRKALDDQIGPVLLDAFPFAGRRCERLTSAVMRRL 220 >ref|YP_004613664.1| ECF subfamily RNA polymerase sigma-24 subunit [Mesorhizobium opportunistum WSM2075] gb|AEH89570.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Mesorhizobium opportunistum WSM2075] Length = 222 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 134/212 (63%), Positives = 177/212 (83%), Gaps = 4/212 (1%) Query: 14 SGDAELVQRALARDEAAIRAIMQANNRRLFRLARGILRNDHEAEDVVQDAYVRAFTHLDQ 73 SGD LVQRALAR+ A RAI++ +N+RLFR+ARG++RND EAED+VQ+AYV AF L Sbjct: 12 SGDMLLVQRALAREANAFRAIIKTHNQRLFRIARGVVRNDAEAEDIVQEAYVHAFASLAA 71 Query: 74 FRGESSLSTWLSRIAMNEALGRLRRRHSSVEWSDLPKGAPEAQIIQFPLSSTDDPEKSMA 133 FRGESSL+TWLSRI +NEALGRLR+R V +P+ PEA+II+FPL+ +DDPE++MA Sbjct: 72 FRGESSLATWLSRIVINEALGRLRKRRRIVA---MPEN-PEARIIRFPLNPSDDPERTMA 127 Query: 134 QREIQHVVEHAIDELPEAFRLVFITRVIEGMNVEETAEILGLKPETVKTRLHRARTMLRD 193 QR+I +VE A D LP+ +R+VF+ RVIEG+++EETA++LGL+PETVKTRLHRAR +LR Sbjct: 128 QRQILALVERATDSLPDIYRMVFVARVIEGLSMEETADLLGLRPETVKTRLHRARALLRK 187 Query: 194 NVERKIGPVVMEAFPFAGKRCERLTEAVLKRL 225 ++ +IGPV+++AFPFAG+RCERLT+AV+ RL Sbjct: 188 ALDDEIGPVLLDAFPFAGRRCERLTQAVMGRL 219 >ref|YP_001243250.1| RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ39344.1| Putative RNA polymerase sigma factor protein [Bradyrhizobium sp. BTAi1] Length = 226 Score = 274 bits (700), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 148/219 (67%), Positives = 184/219 (84%), Gaps = 1/219 (0%) Query: 7 TSLPPTSSGDAELVQRALARDEAAIRAIMQANNRRLFRLARGILRNDHEAEDVVQDAYVR 66 T+ SG+ +L++RA ARDEAAIRAI+QANNRRLFR+ARGILRND EAEDVVQD YVR Sbjct: 5 TTASAVPSGEDDLIRRARARDEAAIRAILQANNRRLFRIARGILRNDSEAEDVVQDTYVR 64 Query: 67 AFTHLDQFRGESSLSTWLSRIAMNEALGRLRRRHSSVEWSDLPKGAPEAQIIQFPLSSTD 126 A THL +FRG+SSLSTWL RIAMNEA+GRLR ++ + + A++I+F +S+D Sbjct: 65 ALTHLGEFRGQSSLSTWLVRIAMNEAMGRLRGARPALPLDEQREDKSGAEVIEFRATSSD 124 Query: 127 DPEKSMAQREIQHVVEHAIDELPEAFRLVFITRVIEGMNVEETAEILGLKPETVKTRLHR 186 PEKS+AQR+IQ VVE AID+L E FRLVFI RVIE M+++ETA++LGLKPETVKTRLHR Sbjct: 125 -PEKSVAQRQIQAVVEQAIDDLSEPFRLVFIARVIEEMSIDETADLLGLKPETVKTRLHR 183 Query: 187 ARTMLRDNVERKIGPVVMEAFPFAGKRCERLTEAVLKRL 225 AR MLR+NVE++IGPV+++AFPFAG+RCERLT+AVL+RL Sbjct: 184 ARGMLRENVEKEIGPVLLDAFPFAGQRCERLTDAVLRRL 222