BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0036.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004680372.1| LysR family transcriptional regulator [Cupri... 262 5e-68 ref|ZP_07676203.1| regulatory protein [Ralstonia sp. 5_7_47FAA] ... 260 2e-67 ref|YP_001900317.1| LysR family transcriptional regulator [Ralst... 260 2e-67 ref|YP_299760.1| regulatory protein LysR [Ralstonia eutropha JMP... 258 9e-67 emb|CCA79629.1| putative HTH-type transcriptional activator aaeR... 257 1e-66 >ref|YP_004680372.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI79140.1| transcriptional regulator LysR family [Cupriavidus necator N-1] Length = 326 Score = 262 bits (669), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 133/290 (45%), Positives = 181/290 (62%), Gaps = 2/290 (0%) Query: 1 MEWRDWELFCEVVEHGGFTAAARVLGHPKSSLSAAVQRLEANLGLRLIERTTRHLRLTDS 60 ++W DWE FC VVE G FTAAA L PKS +SAAV RLE +G +L+ERTTR +RLTD+ Sbjct: 5 IQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDA 64 Query: 61 GETIYRKVRPLFAALHDTHSEALAMSSAVAGTLRIKAPYEFGAHHAGPVACAVMGRYPEL 120 G+ +YR V PLFA L + E LA V G LRI PYEFGA G V C + +P L Sbjct: 65 GKAVYRDVAPLFARLREIRQETLAREERVQGVLRIATPYEFGAQQLGGVICRTLAAHPAL 124 Query: 121 AIRIDVEHDIVNPIAENYDIVFAMLEAPLPSAGIVIRRVFTLERGLFAAPALLEKFGEPR 180 + +++ +V+PI + +D+ F +++ LP +G V RR++ +ERGLFAAPAL + Sbjct: 125 DVAVEITQGLVDPIRDGFDVAFVVVDTDLPDSGTVARRIYHVERGLFAAPALADSLPAQL 184 Query: 181 TLDDLRKLPLLTGPSDPPWAITAPGGAVEHLAVDRARLTSSNAHVRLQAALAGHGVLRVT 240 +DL +P LT P D W T G V R R+ + NA +R+Q ALAG G+ R++ Sbjct: 185 RPEDLANMPTLTTPGDTVWEFTRDGQTVS--VPIRPRMQTHNAELRVQGALAGLGIARLS 242 Query: 241 ASYTRAAVAAGQLRRLLPDHACEPLNVHALLPARQFVPAKVRCFLDAMEA 290 Y A +A G+L R+LPD+ PL V ALLP R+ P KVR F++A+E+ Sbjct: 243 VIYCEAEIAQGRLVRVLPDYPLPPLRVFALLPDRRLQPRKVRAFMEAIES 292 >ref|ZP_07676203.1| regulatory protein [Ralstonia sp. 5_7_47FAA] gb|EFP65541.1| regulatory protein [Ralstonia sp. 5_7_47FAA] Length = 305 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/293 (49%), Positives = 184/293 (62%), Gaps = 2/293 (0%) Query: 1 MEWRDWELFCEVVEHGGFTAAARVLGHPKSSLSAAVQRLEANLGLRLIERTTRHLRLTDS 60 MEW DWE FC VVE G FTAAA LG PKS+ SAAV RLEA LG+RL+ RTTR LRLT++ Sbjct: 4 MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTEA 63 Query: 61 GETIYRKVRPLFAALHDTHSEALAMSSAVAGTLRIKAPYEFGAHHAGPVACAVMGRYPEL 120 G Y + PLF L + H++ A S VAGTLRI APYE GA H C + +YP L Sbjct: 64 GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 123 Query: 121 AIRIDVEHDIVNPIAENYDIVFAMLEAPLPSAGIVIRRVFTLERGLFAAPALLEKFGEPR 180 I++ + + + +A YDIVF M++ LP + +V RRV + RGL+A+P LL + + Sbjct: 124 QIQVHISWEQPDLLASGYDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPTLLAERPPLK 183 Query: 181 TLDDLRKLPLLTGPSDPPWAITAPGG-AVEHLAVD-RARLTSSNAHVRLQAALAGHGVLR 238 T DL P L+GP D WA G AVE + V + RL + NA +R +AA+ G GV R Sbjct: 184 TPADLAGWPCLSGPDDASWAFRPVGEPAVEPIEVPIQPRLQTLNAEMRARAAVRGLGVAR 243 Query: 239 VTASYTRAAVAAGQLRRLLPDHACEPLNVHALLPARQFVPAKVRCFLDAMEAH 291 + S VAAG+L R+LPD L V+AL+PAR+ VP KVR FLDA+EA Sbjct: 244 MARSVGDTEVAAGRLVRVLPDFELTALRVYALMPARKLVPRKVRVFLDALEAE 296 >ref|YP_001900317.1| LysR family transcriptional regulator [Ralstonia pickettii 12J] gb|ACD27885.1| transcriptional regulator, LysR family [Ralstonia pickettii 12J] Length = 302 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 144/293 (49%), Positives = 185/293 (63%), Gaps = 2/293 (0%) Query: 1 MEWRDWELFCEVVEHGGFTAAARVLGHPKSSLSAAVQRLEANLGLRLIERTTRHLRLTDS 60 MEW DWE FC VVE G FTAAA LG PKS+ SAAV RLEA LG+RL+ RTTR LRLT++ Sbjct: 1 MEWNDWETFCRVVEAGSFTAAAEALGIPKSTASAAVSRLEAGLGVRLMTRTTRQLRLTEA 60 Query: 61 GETIYRKVRPLFAALHDTHSEALAMSSAVAGTLRIKAPYEFGAHHAGPVACAVMGRYPEL 120 G Y + PLF L + H++ A S VAGTLRI APYE GA H C + +YP L Sbjct: 61 GSHFYDDIAPLFERLREVHADTTAASETVAGTLRIAAPYEVGAQHLTEPVCRTLEKYPHL 120 Query: 121 AIRIDVEHDIVNPIAENYDIVFAMLEAPLPSAGIVIRRVFTLERGLFAAPALLEKFGEPR 180 I++ + + + +A +DIVF M++ LP + +V RRV + RGL+A+PALL + + Sbjct: 121 QIQVHISWEQPDLLASGFDIVFVMVDQVLPDSSLVARRVVLIPRGLYASPALLAERPPLK 180 Query: 181 TLDDLRKLPLLTGPSDPPWAITAPGG-AVEHLAVD-RARLTSSNAHVRLQAALAGHGVLR 238 T DL P L+GP D WA G AVE + V + RL + NA +R +AA+ G GV R Sbjct: 181 TPADLAGWPCLSGPDDASWAFRPVGEPAVEPIEVPIQPRLQTLNAEMRARAAVRGLGVAR 240 Query: 239 VTASYTRAAVAAGQLRRLLPDHACEPLNVHALLPARQFVPAKVRCFLDAMEAH 291 + S VAAG+L R+LPD L V+AL+PAR+ VP KVR FLDA+EA Sbjct: 241 MARSVGDTEVAAGRLVRVLPDFELTALRVYALMPARKLVPRKVRVFLDALEAE 293 >ref|YP_299760.1| regulatory protein LysR [Ralstonia eutropha JMP134] gb|AAZ64916.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 326 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 131/291 (45%), Positives = 180/291 (61%), Gaps = 4/291 (1%) Query: 1 MEWRDWELFCEVVEHGGFTAAARVLGHPKSSLSAAVQRLEANLGLRLIERTTRHLRLTDS 60 ++W DWE FC VVE G FTAAA L PKS +SAAV RLE +G +L+ERTTR +RLTD+ Sbjct: 21 IQWNDWEAFCCVVEQGTFTAAAEQLDCPKSRVSAAVARLETAIGAKLLERTTRRMRLTDA 80 Query: 61 GETIYRKVRPLFAALHDTHSEALAMSSAVAGTLRIKAPYEFGAHHAGPVACAVMGRYPEL 120 G +YR V PLFA L + E LA V G LRI PYEFGA G + C + +P L Sbjct: 81 GSAVYRDVAPLFARLREIRQETLAREEGVQGVLRIATPYEFGAQQLGGIICRTLAAHPAL 140 Query: 121 AIRIDVEHDIVNPIAENYDIVFAMLEAPLPSAGIVIRRVFTLERGLFAAPALLEKFGEPR 180 + +++ +V+PI + +D+ F +++A LP +G V RR++ +ERGLF APAL Sbjct: 141 DVSVEITQGLVDPIRDGFDVAFVIVDADLPDSGTVARRIYHVERGLFVAPALAASLPPLA 200 Query: 181 TLDDLRKLPLLTGPSDPPWAITAPGGAVEHLAVD-RARLTSSNAHVRLQAALAGHGVLRV 239 +DL +P LT P D W G E + V R R+ + NA +RLQ ALAG G+ ++ Sbjct: 201 RPEDLVNMPTLTTPGDTVWEFQRDG---ESITVPIRPRMQTYNAELRLQGALAGLGIAKL 257 Query: 240 TASYTRAAVAAGQLRRLLPDHACEPLNVHALLPARQFVPAKVRCFLDAMEA 290 + +Y A +A G+L R+LPD+ PL ALLP R+ P KVR F++A+E+ Sbjct: 258 SVNYCEAEIAQGRLVRVLPDYPLPPLRAFALLPDRRLQPRKVRAFMEAIES 308 >emb|CCA79629.1| putative HTH-type transcriptional activator aaeR [blood disease bacterium R229] Length = 305 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/293 (47%), Positives = 183/293 (62%), Gaps = 2/293 (0%) Query: 1 MEWRDWELFCEVVEHGGFTAAARVLGHPKSSLSAAVQRLEANLGLRLIERTTRHLRLTDS 60 MEW DWE+FC VVE G FTAAA VLG PKS+ SAAV RLEA+LG+RL+ RTTR LRLT++ Sbjct: 1 MEWNDWEIFCRVVEAGSFTAAAEVLGIPKSTASAAVSRLEASLGVRLLTRTTRQLRLTEA 60 Query: 61 GETIYRKVRPLFAALHDTHSEALAMSSAVAGTLRIKAPYEFGAHHAGPVACAVMGRYPEL 120 G Y + PLF L + H++ A S V+GTLRI APYE GA H C + R+P L Sbjct: 61 GSHFYDDIAPLFERLREVHADTAAASETVSGTLRIAAPYEVGAQHLTEPVCQTLARFPNL 120 Query: 121 AIRIDVEHDIVNPIAENYDIVFAMLEAPLPSAGIVIRRVFTLERGLFAAPALLEKFGEPR 180 I++ + + + +A YDIVF M++ L + +V RRV + RGL+AAP+LL + Sbjct: 121 QIQVHISWEQPDLLASGYDIVFVMVDQTLADSSLVARRVVLIPRGLYAAPSLLAERAPLA 180 Query: 181 TLDDLRKLPLLTGPSDPPWAITAPGG-AVEHLAVD-RARLTSSNAHVRLQAALAGHGVLR 238 DL P L+GP D W G E V + RL + NA +R++AA+ G GV R Sbjct: 181 MPADLAGWPCLSGPDDASWVFRPAGEPTAEPFEVPIQPRLQTLNAEMRVRAAVRGLGVAR 240 Query: 239 VTASYTRAAVAAGQLRRLLPDHACEPLNVHALLPARQFVPAKVRCFLDAMEAH 291 + A VA G+L R+LPD+ PL V+AL+PAR+ VP KVR FLDA+EA Sbjct: 241 MARLVGDAEVATGRLVRVLPDYEPTPLRVYALMPARKLVPRKVRVFLDALEAQ 293