BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0035.p (354 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01626534.1| Rieske (2Fe-2S) region protein [marine gamma ... 370 e-100 ref|YP_003979022.1| rieske [2Fe-2S] domain-containing protein 5 ... 358 9e-97 ref|YP_003607673.1| Rieske (2Fe-2S) iron-sulfur domain protein [... 353 3e-95 ref|YP_004681953.1| LysR family transcriptional regulator [Cupri... 348 1e-93 ref|YP_298537.1| Rieske (2Fe-2S) domain-containing protein [Rals... 346 3e-93 >ref|ZP_01626534.1| Rieske (2Fe-2S) region protein [marine gamma proteobacterium HTCC2080] gb|EAW40573.1| Rieske (2Fe-2S) region protein [marine gamma proteobacterium HTCC2080] Length = 364 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 176/347 (50%), Positives = 244/347 (70%), Gaps = 6/347 (1%) Query: 7 FLRNTWYVAAWNHELIDGKMVARTILERPIVLYRGSSGKVVALDDRCCHRAAPLSMGRIE 66 FL N WY AAW E+ DGK +RT+LE+PIV+Y+ SG VALD+RCCHR+APLSMGRIE Sbjct: 8 FLYNCWYAAAWTSEIDDGKPFSRTLLEKPIVIYKNESGVYVALDNRCCHRSAPLSMGRIE 67 Query: 67 GDDIRCMYHGMKFAADGKCIQIPGQDTIPAKLGVRSYPVVERYNLIFIWTGDPEKADPKL 126 GD +RCMYHGMK+ G+C++IPGQ I + V SYP+V+R +++IW G+ KA+ Sbjct: 68 GDCLRCMYHGMKYDPSGQCVEIPGQAKISSNHRVHSYPLVDRGGMLWIWMGEAHKANSDD 127 Query: 127 ILDYPPLEDPRWRGLPG--YMHYKANWLLIVDNLSDFAHLAFVHTNTLGGSEEYAYKTKP 184 I + PL+DP+W GLP Y+HY ANW+LIVDNL+DF+HLAFVHT+TLGGSE+YA ++ Sbjct: 128 IPHFEPLDDPQWCGLPNRCYLHYDANWMLIVDNLADFSHLAFVHTSTLGGSEDYATESAQ 187 Query: 185 VAIEKLDDGFRVERWHMAAEPPPYHKKVIPNKTDKI-DRRNIGRMIVPGIFTLDTTFAPA 243 ++KLD+GF ERWH +E PPY +K+ P D+I DRRN RM PGIF +DT F P Sbjct: 188 -QVDKLDNGFEFERWHRGSEQPPYLQKITPWPADRIVDRRNFVRMYTPGIFLMDTQFGP- 245 Query: 244 GQGVEKGVQVPGTRSYRNAQFMTPETRSTTHFFWNYLHDFDIDNPNIALSLRHSLEEGFN 303 +G ++ Q P +RN Q+MTPETR+++HFFW YL +F + + +L+ ++ +GF Sbjct: 246 -EGWDQEAQRPELLEFRNCQYMTPETRNSSHFFWEYLRNFRKGDNDAGETLKAAMFDGFF 304 Query: 304 EDKDIIEAQQRVFDADPDYQLLAIGADAPLTYFRWLFARKLEAEKST 350 EDK IIEAQQ++ +A D+Q + +D L FR ++ ++ E+ + Sbjct: 305 EDKVIIEAQQQLLEAHGDFQPRGLASDNALAQFRRVWFERIAEERKS 351 >ref|YP_003979022.1| rieske [2Fe-2S] domain-containing protein 5 [Achromobacter xylosoxidans A8] gb|ADP16307.1| rieske [2Fe-2S] domain protein 5 [Achromobacter xylosoxidans A8] Length = 356 Score = 358 bits (918), Expect = 9e-97, Method: Compositional matrix adjust. Identities = 168/349 (48%), Positives = 237/349 (67%), Gaps = 4/349 (1%) Query: 6 IFLRNTWYVAAWNHELIDGKMVARTILERPIVLYRGSSGKVVALDDRCCHRAAPLSMGRI 65 +F++NTWYVAAW+ E+ + +RTI+ P+++YR ++G++VAL+DRCCHR APLS+GR Sbjct: 1 MFIKNTWYVAAWDQEVGANGLFSRTIIGVPVLMYRDAAGRLVALEDRCCHRGAPLSVGRR 60 Query: 66 EGDDIRCMYHGMKFAADGKCIQIPGQDTIPAKLGVRSYPVVERYNLIFIWTGDPEKADPK 125 EGD +RCMYHG+KF G C++ P Q IP + VR++PVVER+ I+IW GDPE+ADP Sbjct: 61 EGDCVRCMYHGLKFDPTGACVEAPAQARIPPQARVRTFPVVERHRWIWIWMGDPERADPA 120 Query: 126 LILDYPPLEDPRWRGLPGYMHYKANWLLIVDNLSDFAHLAFVHTNTLGGSEEYAYKTKPV 185 LI D L+ P WR L GY+HY N+LLI DNL DF+HL FVH TLGGSE+YA + V Sbjct: 121 LIPDTQWLDHPDWRSLDGYIHYDVNYLLIADNLLDFSHLPFVHPTTLGGSEDYAAVSPKV 180 Query: 186 AIEKLDDGFRVERWHMAAEPPPYHKKVIPNKTDKIDRRNIGRMIVPGIFTLDTTFAPAGQ 245 ++L DG R+ RW + E PP+ +KV +DR NI +PGI +D+ APAG Sbjct: 181 --DRLPDGVRITRWTLNTEAPPFARKV-REWPGLVDRWNIYNFTLPGILLMDSGMAPAGN 237 Query: 246 GVEKGVQVPGTRSYRNAQFMTPETRSTTHFFWNYLHDFDIDNPNIALSLRHSLEEGFNED 305 G ++G + G +R Q +TPET ++TH+F+ + H+F ID P + S+ S+ E F+ED Sbjct: 238 GAQEGNRA-GAIEFRGCQALTPETATSTHYFFAHPHNFSIDQPEVTASIHQSVVEAFDED 296 Query: 306 KDIIEAQQRVFDADPDYQLLAIGADAPLTYFRWLFARKLEAEKSTARAA 354 +DII AQQR PD++++ + DA L+ FRW+ AR++E E+ A A Sbjct: 297 RDIITAQQRSLSLAPDFKMVPLSIDAALSQFRWVVARRVEEEQQQAAAG 345 >ref|YP_003607673.1| Rieske (2Fe-2S) iron-sulfur domain protein [Burkholderia sp. CCGE1002] gb|ADG18162.1| Rieske (2Fe-2S) iron-sulfur domain protein [Burkholderia sp. CCGE1002] Length = 354 Score = 353 bits (905), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 165/349 (47%), Positives = 233/349 (66%), Gaps = 4/349 (1%) Query: 6 IFLRNTWYVAAWNHELIDGKMVARTILERPIVLYRGSSGKVVALDDRCCHRAAPLSMGRI 65 +F+RNTWYVAAW+HE+ D + +RTI+ P++LYR + G++VAL DRCCHR APLS+GR Sbjct: 1 MFIRNTWYVAAWSHEVTDDALFSRTIIGTPVLLYRTTDGQLVALQDRCCHRGAPLSVGRR 60 Query: 66 EGDDIRCMYHGMKFAADGKCIQIPGQDTIPAKLGVRSYPVVERYNLIFIWTGDPEKADPK 125 EGD +RC+YHG+KF A G C++ P Q IP K VRSYPVVER+ I+IW GDP ADP Sbjct: 61 EGDCVRCLYHGLKFDARGTCVEAPAQPRIPPKATVRSYPVVERHRWIWIWMGDPMLADPA 120 Query: 126 LILDYPPLEDPRWRGLPGYMHYKANWLLIVDNLSDFAHLAFVHTNTLGGSEEYAYKTKPV 185 I D L+DP WR LPGY+HY N+LLI DNL DF+HL FVH TLGG E YA +P Sbjct: 121 TIPDTHWLDDPAWRCLPGYIHYDVNYLLICDNLLDFSHLPFVHPGTLGGPETYA-DVRPT 179 Query: 186 AIEKLDDGFRVERWHMAAEPPPYHKKVIPNKTDKIDRRNIGRMIVPGIFTLDTTFAPAGQ 245 +E+LD+G R+ RW M + P + + + +DR N+ +PGI +D+ AP G Sbjct: 180 -VERLDNGVRISRWTMDTQAPSF-AAAVKHWPGNVDRWNLYDFTIPGILLMDSGMAPVGT 237 Query: 246 GVEKGVQVPGTRSYRNAQFMTPETRSTTHFFWNYLHDFDIDNPNIALSLRHSLEEGFNED 305 G +G +V +R+ Q +TPET ++TH+F+ H+F I+ P + S+ ++ E F ED Sbjct: 238 GAREGKRVDAA-EFRSCQALTPETETSTHYFFAQPHNFAIEQPEVTQSIHEAIVEAFAED 296 Query: 306 KDIIEAQQRVFDADPDYQLLAIGADAPLTYFRWLFARKLEAEKSTARAA 354 + II AQ+R DPD++++A G D+ L+ FRW+ ++L+AE + + + Sbjct: 297 RAIITAQRRNLSLDPDFKMMAFGIDSALSQFRWIVNQRLDAELAQSSVS 345 >ref|YP_004681953.1| LysR family transcriptional regulator [Cupriavidus necator N-1] gb|AEI80721.1| vanillate O-demethylase oxygenase subunit [Cupriavidus necator N-1] Length = 351 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/344 (47%), Positives = 231/344 (67%), Gaps = 4/344 (1%) Query: 6 IFLRNTWYVAAWNHELIDGKMVARTILERPIVLYRGSSGKVVALDDRCCHRAAPLSMGRI 65 +F+RNTWYVA W+ E+ + +RTI+ P+++YR G +VA++DRCCHR APLS+GR Sbjct: 1 MFVRNTWYVAGWDKEVGASDLFSRTIIGIPVLMYRAEDGTLVAIEDRCCHRGAPLSVGRR 60 Query: 66 EGDDIRCMYHGMKFAADGKCIQIPGQDTIPAKLGVRSYPVVERYNLIFIWTGDPEKADPK 125 EGD +RCMYHG+KF G+CI+ P Q IP + VR++PVVER + I+IW GD E ADP Sbjct: 61 EGDCVRCMYHGLKFDPTGQCIEAPAQQRIPPQARVRTFPVVERNSWIWIWMGDAEAADPA 120 Query: 126 LILDYPPLEDPRWRGLPGYMHYKANWLLIVDNLSDFAHLAFVHTNTLGGSEEYAYKTKPV 185 LI D L+DP WR L GY+HY N+LLI DNL DF+HL FVH TLGGSE+YA +P Sbjct: 121 LIPDTHWLDDPAWRSLDGYIHYDVNYLLIADNLLDFSHLPFVHPTTLGGSEDYA-GVQPT 179 Query: 186 AIEKLDDGFRVERWHMAAEPPPYHKKVIPNKTDKIDRRNIGRMIVPGIFTLDTTFAPAGQ 245 +E+L+DG R+ RW + E PP+ K+V + K+DR NI +P I +D+ AP G Sbjct: 180 -VERLEDGVRITRWTIDTEAPPFAKQV-KDWPGKVDRWNIYNFTLPAILLMDSGMAPTGT 237 Query: 246 GVEKGVQVPGTRSYRNAQFMTPETRSTTHFFWNYLHDFDIDNPNIALSLRHSLEEGFNED 305 G ++G ++ +R Q +TPET ++TH+F+ + H+F ID P + S+ ++ F+ED Sbjct: 238 GAQEGRRIDAA-EFRGCQALTPETENSTHYFFAHPHNFAIDQPEVTRSIHQAVVAAFDED 296 Query: 306 KDIIEAQQRVFDADPDYQLLAIGADAPLTYFRWLFARKLEAEKS 349 +DII AQQR PD++++ DA L+ FRW+ AR+LE E + Sbjct: 297 RDIITAQQRSLALAPDFKMIPFSIDAALSQFRWVVARRLEEEAA 340 >ref|YP_298537.1| Rieske (2Fe-2S) domain-containing protein [Ralstonia eutropha JMP134] gb|AAZ63693.1| vanillate demethylase subunit A [Ralstonia eutropha JMP134] Length = 350 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 166/342 (48%), Positives = 222/342 (64%), Gaps = 4/342 (1%) Query: 6 IFLRNTWYVAAWNHELIDGKMVARTILERPIVLYRGSSGKVVALDDRCCHRAAPLSMGRI 65 +F+RNTWYVA W++E+ + +RTI+ P+++YR G + AL+DRCCHR APLS+GR Sbjct: 1 MFVRNTWYVAGWDNEVGASNLFSRTIIGIPVLMYRAEDGTLHALEDRCCHRGAPLSIGRR 60 Query: 66 EGDDIRCMYHGMKFAADGKCIQIPGQDTIPAKLGVRSYPVVERYNLIFIWTGDPEKADPK 125 EGD +RCMYHG+KF G+CI+ P Q IP + VR PVVER I+IW GDPE ADP Sbjct: 61 EGDCVRCMYHGLKFDTSGRCIEAPAQQRIPPQARVRVLPVVERNRWIWIWMGDPEAADPA 120 Query: 126 LILDYPPLEDPRWRGLPGYMHYKANWLLIVDNLSDFAHLAFVHTNTLGGSEEYAYKTKPV 185 LI D L DP WR L GY+HY N+LLI DNL DF+HL FVH TLGGSE YA V Sbjct: 121 LIPDTHWLADPAWRSLDGYIHYDVNYLLIADNLLDFSHLPFVHPTTLGGSEAYAAAQPKV 180 Query: 186 AIEKLDDGFRVERWHMAAEPPPYHKKVIPNKTDKIDRRNIGRMIVPGIFTLDTTFAPAGQ 245 E+LDDG R+ RW + E PP+ K+V N K+DR NI +P I +D+ AP G Sbjct: 181 --ERLDDGVRITRWTLNTEAPPFAKQV-KNWPGKVDRWNIYNFTIPAILLMDSGMAPTGT 237 Query: 246 GVEKGVQVPGTRSYRNAQFMTPETRSTTHFFWNYLHDFDIDNPNIALSLRHSLEEGFNED 305 G +G ++ +R Q +TPET ++TH+F+ + H+F IDNP + S+ S+ F+ED Sbjct: 238 GAPEGQRIDAA-EFRGCQALTPETENSTHYFFAHPHNFAIDNPEVTRSIHQSVVTAFDED 296 Query: 306 KDIIEAQQRVFDADPDYQLLAIGADAPLTYFRWLFARKLEAE 347 +DII AQQR PD++++ DA L+ FRW+ R++ E Sbjct: 297 RDIITAQQRSLALAPDFKMVPFSIDAALSQFRWVVERRVADE 338