BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0203.0023.p (382 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242096.1| putative amino-acid ABC transporter periplas... 633 e-179 ref|YP_001207644.1| putative amino-acid ABC transporter periplas... 623 e-176 ref|YP_488224.1| extracellular ligand-binding receptor [Rhodopse... 523 e-146 ref|YP_567918.1| extracellular ligand-binding receptor [Rhodopse... 521 e-146 pdb|3SG0|A Chain A, The Crystal Structure Of An Extracellular Li... 503 e-140 >ref|YP_001242096.1| putative amino-acid ABC transporter periplasmic substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38190.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 381 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 303/382 (79%), Positives = 345/382 (90%), Gaps = 1/382 (0%) Query: 1 MKLAMAGLLTFASAILIAPDARADIKVGVVVSGSGPGSALGQPQMRTIAALPKEIGGEKV 60 M+ A+A +L A +++A ARADIKVG+VVS +GPGSALGQPQ++ +AALPKEIGGEK+ Sbjct: 1 MRAAVA-VLGMALTMMLAAPARADIKVGIVVSATGPGSALGQPQIKAVAALPKEIGGEKI 59 Query: 61 TYIALDDESDPTKGTQNARRLVIQDGVDILIGSSLTPVTMPMLDVAVESKTPIISLAAAT 120 YIALDDESD KG QNARRLVIQDGVD++IGSSLTPVTMPMLDVA+ES+TP++SLAA+T Sbjct: 60 VYIALDDESDSVKGLQNARRLVIQDGVDVIIGSSLTPVTMPMLDVALESRTPLLSLAAST 119 Query: 121 AIVQPMDDRRRWAFKVVPNDDLMAAAILKYIAKSGIKTLGYIGVSDGYGEGYYKEVSRLA 180 AIVQPMDD+R+WAFKVVPNDD+MAAA+LKYIAKSG+KTLG+IGVSDGYGEGYY+EV++LA Sbjct: 120 AIVQPMDDKRKWAFKVVPNDDIMAAAMLKYIAKSGVKTLGFIGVSDGYGEGYYQEVTKLA 179 Query: 181 PQLGLTVTTHEVYARADTSAMGQALKVIATNPEAVFIASAGTPAVLPQEALRSRGYAGKI 240 P+LGLTVTTHEVYAR DTSAMGQALKVIATNP+AVFIASAGTPAVLPQ+ALR RGYAGKI Sbjct: 180 PKLGLTVTTHEVYARGDTSAMGQALKVIATNPDAVFIASAGTPAVLPQQALRERGYAGKI 239 Query: 241 FQTHGVASEEFIKLGGANVEGAIFTGEAFTIADDLPANDPFRQVRDEFVSSYEKANGASP 300 FQTHGVA++EFIKLG NVEGAIF GEAF+IADDL A DPFR+ D FV++Y+ ANG P Sbjct: 240 FQTHGVATQEFIKLGKENVEGAIFAGEAFSIADDLAAEDPFRRANDAFVAAYQAANGDRP 299 Query: 301 NIFGAHLWDAVTLFKRAAANALKTAKPGTAEFRAALRDELERGKDVYLNNGLSTMSPTDH 360 NIF AHLWD VTL K A AL+ A+PGTA+FR ALRDELERGKDVYLNNGLS MSPTDH Sbjct: 300 NIFAAHLWDTVTLLKGAIPGALEAARPGTADFRTALRDELERGKDVYLNNGLSNMSPTDH 359 Query: 361 NGYDERSAFLIKVEGGKFRLVK 382 NGYDERSAFLIKVEGG+FRLVK Sbjct: 360 NGYDERSAFLIKVEGGRFRLVK 381 >ref|YP_001207644.1| putative amino-acid ABC transporter periplasmic substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79427.1| putative amino-acid ABC transporter, periplasmic substrate-binding protein [Bradyrhizobium sp. ORS 278] Length = 382 Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust. Identities = 297/362 (82%), Positives = 331/362 (91%) Query: 21 ARADIKVGVVVSGSGPGSALGQPQMRTIAALPKEIGGEKVTYIALDDESDPTKGTQNARR 80 A+ADIKVG+VVS +GPGSALGQPQ++ +AALPKEIGGEK+ YIALDDESD KG QNARR Sbjct: 21 AQADIKVGIVVSATGPGSALGQPQIKAVAALPKEIGGEKIVYIALDDESDSVKGLQNARR 80 Query: 81 LVIQDGVDILIGSSLTPVTMPMLDVAVESKTPIISLAAATAIVQPMDDRRRWAFKVVPND 140 LVIQDGVD++IGSSLTPVTMPMLDVA+ES+TP++SLAA+TAIVQPMDD+R+WAFKVVPND Sbjct: 81 LVIQDGVDVIIGSSLTPVTMPMLDVALESRTPLLSLAASTAIVQPMDDKRKWAFKVVPND 140 Query: 141 DLMAAAILKYIAKSGIKTLGYIGVSDGYGEGYYKEVSRLAPQLGLTVTTHEVYARADTSA 200 DLMAAA+LKYIA+SG+KTLG+IGVSDGYGEGYY+EV++LAP+LG+TVTTHEVYAR DTSA Sbjct: 141 DLMAAAMLKYIARSGVKTLGFIGVSDGYGEGYYQEVTKLAPKLGITVTTHEVYARGDTSA 200 Query: 201 MGQALKVIATNPEAVFIASAGTPAVLPQEALRSRGYAGKIFQTHGVASEEFIKLGGANVE 260 GQALKVIATNP+AVFIASAGTPAVLPQ+ALR RGY GKIFQTHGVA++EFIKLG +VE Sbjct: 201 SGQALKVIATNPDAVFIASAGTPAVLPQQALRERGYQGKIFQTHGVATQEFIKLGKDSVE 260 Query: 261 GAIFTGEAFTIADDLPANDPFRQVRDEFVSSYEKANGASPNIFGAHLWDAVTLFKRAAAN 320 GAIF GEAF+IADDL DPFR+ D FVS+Y+ ANG PNIF AHLWD VTL K A Sbjct: 261 GAIFAGEAFSIADDLAPEDPFRRANDAFVSAYQAANGDRPNIFAAHLWDTVTLLKGAIPG 320 Query: 321 ALKTAKPGTAEFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFRL 380 ALK AKPGT EFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFRL Sbjct: 321 ALKAAKPGTPEFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFRL 380 Query: 381 VK 382 VK Sbjct: 381 VK 382 >ref|YP_488224.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] gb|ABD09313.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris HaA2] Length = 383 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 241/361 (66%), Positives = 304/361 (84%), Gaps = 1/361 (0%) Query: 21 ARADIKVGVVVSGSGPGSALGQPQMRTIAALPKEIGGEKVTYIALDDESDPTKGTQNARR 80 A+A+IK+G+ +S SGPG+ALGQPQ +T+AALPKEIGGEKVTY ALDDESDPTK QNAR+ Sbjct: 21 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIGGEKVTYFALDDESDPTKAAQNARK 80 Query: 81 LVIQDGVDILIGSSLTPVTMPMLDVAVESKTPIISLAAATAIVQPMDDRRRWAFKVVPND 140 L+ ++ VD+LIGSSLTPV++P++D+A E+KTP++++AAA +V PMD+RR+W +KVVPND Sbjct: 81 LLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPND 140 Query: 141 DLMAAAILKYIAKSGIKTLGYIGVSDGYGEGYYKEVSRLAPQLGLTVTTHEVYARADTSA 200 D+MA AI KYIAK+G K +GYIG SD YGEGYYK ++ AP+LG +TTHEVYAR+D S Sbjct: 141 DIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV 200 Query: 201 MGQALKVIATNPEAVFIASAGTPAVLPQEALRSRGYAGKIFQTHGVASEEFIKLGGANVE 260 GQ LK+IAT P+AVFIASAGTPAVLPQ+ALR RG+ G I+QTHGVA+EEFIKLGG +VE Sbjct: 201 TGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGAIYQTHGVATEEFIKLGGKDVE 260 Query: 261 GAIFTGEAFTIADDLPANDPFRQVRDEFVSSYEKAN-GASPNIFGAHLWDAVTLFKRAAA 319 GAIF GEAF+ A+D+PA+ PFR+V+ FV +Y+ AN GA+P IFG HLWD++TL + A Sbjct: 261 GAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGAAPTIFGVHLWDSMTLVENAIP 320 Query: 320 NALKTAKPGTAEFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFR 379 ALK AKPGT EFRAA+RD++E+ KD+ LNNGLS M+P +HNGYDERSAFLI++ G FR Sbjct: 321 AALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGAFR 380 Query: 380 L 380 L Sbjct: 381 L 381 >ref|YP_567918.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] gb|ABE38017.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisB5] Length = 383 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 242/361 (67%), Positives = 303/361 (83%), Gaps = 1/361 (0%) Query: 21 ARADIKVGVVVSGSGPGSALGQPQMRTIAALPKEIGGEKVTYIALDDESDPTKGTQNARR 80 A+A+IK+G+ +S SGPG+ALGQPQ +T+AALPKEIGGEKVTY ALDDESDPTK QNAR+ Sbjct: 21 AQAEIKIGITMSASGPGAALGQPQSKTVAALPKEIGGEKVTYFALDDESDPTKAAQNARK 80 Query: 81 LVIQDGVDILIGSSLTPVTMPMLDVAVESKTPIISLAAATAIVQPMDDRRRWAFKVVPND 140 L+ ++ VD+LIGSSLTPV++P++D+A E+KTP++++AAA +V PMDDRR+W +KVVPND Sbjct: 81 LLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDDRRKWVYKVVPND 140 Query: 141 DLMAAAILKYIAKSGIKTLGYIGVSDGYGEGYYKEVSRLAPQLGLTVTTHEVYARADTSA 200 D+MA AI KYIAK+G K +GYIG SD YGEGYYK ++ AP+LG +TTHEVYAR+D S Sbjct: 141 DIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV 200 Query: 201 MGQALKVIATNPEAVFIASAGTPAVLPQEALRSRGYAGKIFQTHGVASEEFIKLGGANVE 260 GQ LK+IAT P+AVFIA+AGTPAVLPQ+ALR RG+ G I+QTHGVA+EEFIKLGG +VE Sbjct: 201 TGQVLKIIATKPDAVFIAAAGTPAVLPQKALRERGFKGPIYQTHGVATEEFIKLGGKDVE 260 Query: 261 GAIFTGEAFTIADDLPANDPFRQVRDEFVSSYEKAN-GASPNIFGAHLWDAVTLFKRAAA 319 GAIF GEAF+ A+D+PA+ PFR+V+ FV +Y+ AN GASP IFG HLWD+VTL + A Sbjct: 261 GAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAANGGASPTIFGVHLWDSVTLVENAIP 320 Query: 320 NALKTAKPGTAEFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFR 379 ALK AKPGT EFRAA+RD++E+ KD+ LNNGLS M+P +HNGYDERSA LI++ G FR Sbjct: 321 AALKVAKPGTPEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAVLIEIRDGAFR 380 Query: 380 L 380 L Sbjct: 381 L 381 >pdb|3SG0|A Chain A, The Crystal Structure Of An Extracellular Ligand-Binding Receptor From Rhodopseudomonas Palustris Haa2 Length = 386 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 238/361 (65%), Positives = 296/361 (81%), Gaps = 1/361 (0%) Query: 21 ARADIKVGVVVSGSGPGSALGQPQMRTIAALPKEIGGEKVTYIALDDESDPTKGTQNARR 80 A+A+IK+G+ S SGPG+ALGQPQ +T+AALPKEIGGEKVTY ALDDESDPTK QNAR+ Sbjct: 24 AQAEIKIGITXSASGPGAALGQPQSKTVAALPKEIGGEKVTYFALDDESDPTKAAQNARK 83 Query: 81 LVIQDGVDILIGSSLTPVTMPMLDVAVESKTPIISLAAATAIVQPMDDRRRWAFKVVPND 140 L+ ++ VD+LIGSSLTPV++P++D+A E+KTP+ + AAA +V P D+RR+W +KVVPND Sbjct: 84 LLSEEKVDVLIGSSLTPVSLPLIDIAAEAKTPLXTXAAAAILVAPXDERRKWVYKVVPND 143 Query: 141 DLMAAAILKYIAKSGIKTLGYIGVSDGYGEGYYKEVSRLAPQLGLTVTTHEVYARADTSA 200 D+ A AI KYIAK+G K +GYIG SD YGEGYYK ++ AP+LG +TTHEVYAR+D S Sbjct: 144 DIXAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYARSDASV 203 Query: 201 MGQALKVIATNPEAVFIASAGTPAVLPQEALRSRGYAGKIFQTHGVASEEFIKLGGANVE 260 GQ LK+IAT P+AVFIASAGTPAVLPQ+ALR RG+ G I+QTHGVA+EEFIKLGG +VE Sbjct: 204 TGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKGAIYQTHGVATEEFIKLGGKDVE 263 Query: 261 GAIFTGEAFTIADDLPANDPFRQVRDEFVSSYEKAN-GASPNIFGAHLWDAVTLFKRAAA 319 GAIF GEAF+ A+D PA+ PFR+V+ FV +Y+ AN GA+P IFG HLWD+ TL + A Sbjct: 264 GAIFAGEAFSGAEDXPADSPFRKVKARFVDAYKAANGGAAPTIFGVHLWDSXTLVENAIP 323 Query: 320 NALKTAKPGTAEFRAALRDELERGKDVYLNNGLSTMSPTDHNGYDERSAFLIKVEGGKFR 379 ALK AKPGT EFRAA+RD++E+ KD+ LNNGLS +P +HNGYDERSAFLI++ G FR Sbjct: 324 AALKAAKPGTPEFRAAIRDQIEKSKDLALNNGLSNXTPDNHNGYDERSAFLIEIRDGAFR 383 Query: 380 L 380 L Sbjct: 384 L 384