BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0202.0010.p (526 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769588.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobi... 982 0.0 ref|YP_001204633.1| long-chain-fatty-acid--CoA ligase [Bradyrhiz... 931 0.0 ref|YP_001238957.1| long-chain-fatty-acid--CoA ligase [Bradyrhiz... 926 0.0 ref|YP_004110066.1| AMP-dependent synthetase and ligase [Rhodops... 897 0.0 ref|YP_487206.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 897 0.0 >ref|NP_769588.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC48213.1| bll2948 [Bradyrhizobium japonicum USDA 110] Length = 525 Score = 982 bits (2538), Expect = 0.0, Method: Compositional matrix adjust. Identities = 471/526 (89%), Positives = 496/526 (94%), Gaps = 1/526 (0%) Query: 1 MSDAPKLTNLADMVRDRAKSRGNALAYEFEGRQTSFAEFDVKTNRVANALIAMGVKKGQR 60 MS P L NLADMVR+RA SRGNA AYEFEGR TSFA FD+KTNRVANALI+MGVKKG+R Sbjct: 1 MSTQP-LANLADMVRERATSRGNATAYEFEGRVTSFAAFDIKTNRVANALISMGVKKGER 59 Query: 61 IAYLGKNSDFYFELLMGAMKAGVVMAPVNWRLAGPEVAFIVDDCKAPVLFVGPEFITQAR 120 IAYLGKNSD YFELLMGAMKA VVMAPVNWRLAGPEVAFIV DC+APVLFVGPEFIT R Sbjct: 60 IAYLGKNSDLYFELLMGAMKADVVMAPVNWRLAGPEVAFIVADCRAPVLFVGPEFITLVR 119 Query: 121 NISDKLPGVRTIITTEGGAPEWPDFVAWRDAQSGDDPRVAIEPKDIAIQLYTSGTTGKPK 180 I D++PGVRTIITTEGGAPEW DF AWRDAQSGDDP+V I+ KDIAIQLYTSGTTGKPK Sbjct: 120 QIRDQIPGVRTIITTEGGAPEWQDFTAWRDAQSGDDPKVPIDTKDIAIQLYTSGTTGKPK 179 Query: 181 GAMLSHANFLNLVQSGNEAEKPEWNRWTTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI 240 GAMLSHANFLNLVQ+GN A+KPEWNRW+TDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI Sbjct: 180 GAMLSHANFLNLVQTGNAADKPEWNRWSTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI 239 Query: 241 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRA+ VDFSRLKYMLYGASPIPAALL Sbjct: 240 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRAKTVDFSRLKYMLYGASPIPAALL 299 Query: 301 KECIEVFKCGFVQMYGMTETTGTIVALPPEDHIEGLDRMRSAGKALPGIELAILDADGKP 360 KECIEVFKCGFVQMYGMTETTGTIVALPPEDH+EGL+RMRSAGKALPG+E+AILDADGKP Sbjct: 300 KECIEVFKCGFVQMYGMTETTGTIVALPPEDHVEGLERMRSAGKALPGVEIAILDADGKP 359 Query: 361 LPPGEVGEIATRSGSNMAGYWNLPEATARTIDSDGWLRTGDAGYMDSDGYLYIHDRIKDM 420 LPP +VGEIATRSGSNMAGYWNLPEATA T+ DGWLRTGDAGYMD DGYLYIHDRIKDM Sbjct: 360 LPPRQVGEIATRSGSNMAGYWNLPEATASTLRGDGWLRTGDAGYMDEDGYLYIHDRIKDM 419 Query: 421 IISGGENIYPAEVESALCDHPDVAEAAVIGIPDDKWGEAVKAVVVMKPGKTVTATDIINF 480 IISGGEN+YPAEVESALCDHPDVAEAAVIG+PDDKWGEAVKAVVVMKPGK TATDIINF Sbjct: 420 IISGGENVYPAEVESALCDHPDVAEAAVIGVPDDKWGEAVKAVVVMKPGKQATATDIINF 479 Query: 481 TRERIAGYKTPKSVDFIPALPRNPSGKILRRSLREPYWAGKDRQVN 526 TRERIAG+KTPKSV+F+P LPRNPSGKILRR LREPYWAGKDR+VN Sbjct: 480 TRERIAGFKTPKSVEFLPTLPRNPSGKILRRQLREPYWAGKDRRVN 525 >ref|YP_001204633.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. ORS 278] emb|CAL76396.1| Putative long-chain fatty-acid-CoA ligase [Bradyrhizobium sp. ORS 278] Length = 526 Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/526 (84%), Positives = 480/526 (91%) Query: 1 MSDAPKLTNLADMVRDRAKSRGNALAYEFEGRQTSFAEFDVKTNRVANALIAMGVKKGQR 60 MS + L D+VR +A++ G+A AYEFEGR TSFAEFD KTN+VANAL A+G+K G+R Sbjct: 1 MSVTTAASTLVDVVRSQAQALGSATAYEFEGRITSFAEFDRKTNQVANALKALGLKPGER 60 Query: 61 IAYLGKNSDFYFELLMGAMKAGVVMAPVNWRLAGPEVAFIVDDCKAPVLFVGPEFITQAR 120 IAY GKNSD YFELL+GAMKA VVMAPVNWRLAGPEVAFIV+DCKAPVLFVGPEFIT R Sbjct: 61 IAYFGKNSDIYFELLVGAMKANVVMAPVNWRLAGPEVAFIVEDCKAPVLFVGPEFITMIR 120 Query: 121 NISDKLPGVRTIITTEGGAPEWPDFVAWRDAQSGDDPRVAIEPKDIAIQLYTSGTTGKPK 180 I D+LP VR IITTEGGAPEW D+ AWRDAQ DDP VAI PKDIA+QLYTSGTTGKPK Sbjct: 121 QIRDQLPSVRQIITTEGGAPEWQDYTAWRDAQRADDPGVAITPKDIALQLYTSGTTGKPK 180 Query: 181 GAMLSHANFLNLVQSGNEAEKPEWNRWTTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI 240 GAMLSHANFLNLV + N EKP+WN+W+TDDVSL+AMPIFHIGGSGWG+M LYHGARGVI Sbjct: 181 GAMLSHANFLNLVNTSNPEEKPDWNKWSTDDVSLIAMPIFHIGGSGWGLMSLYHGARGVI 240 Query: 241 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 AREFDPTK+LDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL Sbjct: 241 AREFDPTKILDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 Query: 301 KECIEVFKCGFVQMYGMTETTGTIVALPPEDHIEGLDRMRSAGKALPGIELAILDADGKP 360 KECI+VFKCGFVQMYGMTETTGTIVALPPEDH+EGL+RMRSAGK LPG+E+AI+D G P Sbjct: 301 KECIDVFKCGFVQMYGMTETTGTIVALPPEDHVEGLERMRSAGKPLPGVEVAIIDPLGNP 360 Query: 361 LPPGEVGEIATRSGSNMAGYWNLPEATARTIDSDGWLRTGDAGYMDSDGYLYIHDRIKDM 420 LPP EVGEIATRSGSNMAGYWNLPEATART+ DGWLRTGDAGYMD DGY+YIHDRIKDM Sbjct: 361 LPPREVGEIATRSGSNMAGYWNLPEATARTLGKDGWLRTGDAGYMDEDGYVYIHDRIKDM 420 Query: 421 IISGGENIYPAEVESALCDHPDVAEAAVIGIPDDKWGEAVKAVVVMKPGKTVTATDIINF 480 IISGGENIYPAEVESA+CDHPDVAEAAVIGIPDDKWGEAVKA+VVMKPGK TATDIINF Sbjct: 421 IISGGENIYPAEVESAICDHPDVAEAAVIGIPDDKWGEAVKAIVVMKPGKQATATDIINF 480 Query: 481 TRERIAGYKTPKSVDFIPALPRNPSGKILRRSLREPYWAGKDRQVN 526 TR RIAG+KTPK+VDF+ ALPRNPSGKILRR+LR+PYWAGKDRQVN Sbjct: 481 TRTRIAGFKTPKTVDFLDALPRNPSGKILRRNLRDPYWAGKDRQVN 526 >ref|YP_001238957.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ35051.1| Putative long-chain fatty-acid-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 526 Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/526 (83%), Positives = 481/526 (91%) Query: 1 MSDAPKLTNLADMVRDRAKSRGNALAYEFEGRQTSFAEFDVKTNRVANALIAMGVKKGQR 60 MS A + L D+VR +A++ G+A AYEFEGR TSFAEFD KTN+VANAL A+GVK +R Sbjct: 1 MSVATAASTLVDIVRKQAQALGSATAYEFEGRVTSFAEFDRKTNQVANALKALGVKPHER 60 Query: 61 IAYLGKNSDFYFELLMGAMKAGVVMAPVNWRLAGPEVAFIVDDCKAPVLFVGPEFITQAR 120 IAY GKNSD YFELL+GAMKA VVMAP+NWRLAGPEVAFIV+DCKAPVLFVGPEFIT R Sbjct: 61 IAYFGKNSDIYFELLVGAMKANVVMAPINWRLAGPEVAFIVEDCKAPVLFVGPEFITMIR 120 Query: 121 NISDKLPGVRTIITTEGGAPEWPDFVAWRDAQSGDDPRVAIEPKDIAIQLYTSGTTGKPK 180 NIS ++P VR IITTEGGAPEW D+ AWRD QS +DP V I PKDIA+QLYTSGTTGKPK Sbjct: 121 NISGEIPSVRHIITTEGGAPEWQDYTAWRDVQSAEDPGVPITPKDIALQLYTSGTTGKPK 180 Query: 181 GAMLSHANFLNLVQSGNEAEKPEWNRWTTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI 240 GAMLSHANFLNLV +G+ A++P+WN+W+TDDVSL+AMPIFHIGGSGWG+M LYHGARGVI Sbjct: 181 GAMLSHANFLNLVNTGDPADRPDWNKWSTDDVSLIAMPIFHIGGSGWGLMSLYHGARGVI 240 Query: 241 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 AREFDPTK+LDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL Sbjct: 241 AREFDPTKILDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 Query: 301 KECIEVFKCGFVQMYGMTETTGTIVALPPEDHIEGLDRMRSAGKALPGIELAILDADGKP 360 KECIEVFKCGFVQMYGMTETTGTI+ALPPEDH+EGL+RMRSAGK LPGIE+AI+D G P Sbjct: 301 KECIEVFKCGFVQMYGMTETTGTIIALPPEDHVEGLERMRSAGKPLPGIEVAIIDPLGNP 360 Query: 361 LPPGEVGEIATRSGSNMAGYWNLPEATARTIDSDGWLRTGDAGYMDSDGYLYIHDRIKDM 420 LPP +VGEIATRSGSNMAGYWNLPEATART+ DGWLRTGDAGYMD DGY+YIHDRIKDM Sbjct: 361 LPPRQVGEIATRSGSNMAGYWNLPEATARTLGKDGWLRTGDAGYMDEDGYVYIHDRIKDM 420 Query: 421 IISGGENIYPAEVESALCDHPDVAEAAVIGIPDDKWGEAVKAVVVMKPGKTVTATDIINF 480 IISGGENIYPAEVESA+CDHPD+AEAAVIGIPDDKWGEAVKA+VVMKPGK TATDIINF Sbjct: 421 IISGGENIYPAEVESAICDHPDIAEAAVIGIPDDKWGEAVKAIVVMKPGKRATATDIINF 480 Query: 481 TRERIAGYKTPKSVDFIPALPRNPSGKILRRSLREPYWAGKDRQVN 526 TR RIAG+KTPKSVDF+ ALPRNPSGKILRR+LR PYWAGKDRQVN Sbjct: 481 TRTRIAGFKTPKSVDFLDALPRNPSGKILRRTLRAPYWAGKDRQVN 526 >ref|YP_004110066.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU45333.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 542 Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/518 (81%), Positives = 469/518 (90%), Gaps = 1/518 (0%) Query: 9 NLADMVRDRAKSRGNALAYEFEGRQTSFAEFDVKTNRVANALIAMGVKKGQRIAYLGKNS 68 LAD++R +A++RGN +AYEFEGR ++FA+FD TN+VA AL A GV+ +RIAYLGKNS Sbjct: 26 TLADVIRAQAETRGNEIAYEFEGRISTFADFDRHTNQVARALQASGVQPNERIAYLGKNS 85 Query: 69 DFYFELLMGAMKAGVVMAPVNWRLAGPEVAFIVDDCKAPVLFVGPEFITQARNISDKLPG 128 D YFEL GA+KA VMAPVNWRLAGPE+A+IV+DCKA +LFVGPEF+ Q R + D++P Sbjct: 86 DIYFELWSGAIKAKAVMAPVNWRLAGPEIAYIVEDCKAAILFVGPEFVDQVRGLKDQIPS 145 Query: 129 VRTIITTEGGAPEWPDFVAWRDAQSGDDPRVAIEPKDIAIQLYTSGTTGKPKGAMLSHAN 188 VR IITTEGGAPEW DF WRDAQ DDP+VAI P DIAIQLYTSGTTGKPKGAMLSHAN Sbjct: 146 VRHIITTEGGAPEWQDFAKWRDAQPSDDPQVAIAPSDIAIQLYTSGTTGKPKGAMLSHAN 205 Query: 189 FLNLVQSGNEAEKPEWNRWTTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVIAREFDPTK 248 FL+LV++G + KPEWN WT DDVSLVAMP+FHIGGSGWG+MG+YHGA+GVIAREFDPTK Sbjct: 206 FLSLVRAGQD-NKPEWNTWTPDDVSLVAMPVFHIGGSGWGMMGIYHGAKGVIAREFDPTK 264 Query: 249 VLDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALLKECIEVFK 308 VLDFFEQSGITKLFMVPAAMQFVVRQPRAR+VDFSRLKYMLYGASPIPAALLKECIEVFK Sbjct: 265 VLDFFEQSGITKLFMVPAAMQFVVRQPRAREVDFSRLKYMLYGASPIPAALLKECIEVFK 324 Query: 309 CGFVQMYGMTETTGTIVALPPEDHIEGLDRMRSAGKALPGIELAILDADGKPLPPGEVGE 368 CGFVQMYGMTETTGTIVALPPEDH+EGL+RMRSAGKALPG+E+AILD DGKPLPP +VGE Sbjct: 325 CGFVQMYGMTETTGTIVALPPEDHVEGLERMRSAGKALPGVEIAILDPDGKPLPPRQVGE 384 Query: 369 IATRSGSNMAGYWNLPEATARTIDSDGWLRTGDAGYMDSDGYLYIHDRIKDMIISGGENI 428 IATRSGSNM GYWNLP+AT +TID+D WLRTGDAGYMD DGY+YIHDRIKDMIISGGENI Sbjct: 385 IATRSGSNMVGYWNLPDATKKTIDADNWLRTGDAGYMDEDGYVYIHDRIKDMIISGGENI 444 Query: 429 YPAEVESALCDHPDVAEAAVIGIPDDKWGEAVKAVVVMKPGKTVTATDIINFTRERIAGY 488 YPAEVESA+CDHPDVAE AV+G+PDD+WGEAVKAVVVMKPGK TA DII FTR RIAGY Sbjct: 445 YPAEVESAICDHPDVAEVAVVGVPDDQWGEAVKAVVVMKPGKEATAQDIIGFTRTRIAGY 504 Query: 489 KTPKSVDFIPALPRNPSGKILRRSLREPYWAGKDRQVN 526 KTPKS+DFIPALPRN SGKILRR LR+PYW+GKDRQVN Sbjct: 505 KTPKSIDFIPALPRNASGKILRRQLRDPYWSGKDRQVN 542 >ref|YP_487206.1| acyl-CoA synthetase [Rhodopseudomonas palustris HaA2] gb|ABD08295.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 525 Score = 897 bits (2319), Expect = 0.0, Method: Compositional matrix adjust. Identities = 421/526 (80%), Positives = 472/526 (89%), Gaps = 1/526 (0%) Query: 1 MSDAPKLTNLADMVRDRAKSRGNALAYEFEGRQTSFAEFDVKTNRVANALIAMGVKKGQR 60 MS+ + NLAD++R +AK+RG+ + YEFEGR TSFA+FD TNR+A AL A GVK +R Sbjct: 1 MSEQTEPANLADVIRAQAKTRGDEILYEFEGRITSFAQFDAHTNRIARALAASGVKPNER 60 Query: 61 IAYLGKNSDFYFELLMGAMKAGVVMAPVNWRLAGPEVAFIVDDCKAPVLFVGPEFITQAR 120 IAYLGKNSD YFEL GAMKA VV+APVNWRLAGPE+A+IV+DCKA +LFVGPEF+ Q R Sbjct: 61 IAYLGKNSDIYFELWAGAMKANVVIAPVNWRLAGPEIAYIVEDCKAAILFVGPEFVDQVR 120 Query: 121 NISDKLPGVRTIITTEGGAPEWPDFVAWRDAQSGDDPRVAIEPKDIAIQLYTSGTTGKPK 180 ++D++P VR IITTEGGAPEW DF WRDAQ DDP+VA+ P DIAIQLYTSGTTGKPK Sbjct: 121 GLTDQIPSVRAIITTEGGAPEWQDFAQWRDAQPSDDPQVAVAPSDIAIQLYTSGTTGKPK 180 Query: 181 GAMLSHANFLNLVQSGNEAEKPEWNRWTTDDVSLVAMPIFHIGGSGWGVMGLYHGARGVI 240 GAMLSHANFL+LV++G + PEWN W++DDVSL+AMP+FHIGGSGWG+M +YHGA+GVI Sbjct: 181 GAMLSHANFLSLVRAGRD-NTPEWNIWSSDDVSLIAMPVFHIGGSGWGMMSIYHGAKGVI 239 Query: 241 AREFDPTKVLDFFEQSGITKLFMVPAAMQFVVRQPRARQVDFSRLKYMLYGASPIPAALL 300 AREFDPTKVLDFFEQ+ ITKLFMVPAAMQFVVRQPRAR+VDFSRLKYMLYGASPIPAALL Sbjct: 240 AREFDPTKVLDFFEQAKITKLFMVPAAMQFVVRQPRAREVDFSRLKYMLYGASPIPAALL 299 Query: 301 KECIEVFKCGFVQMYGMTETTGTIVALPPEDHIEGLDRMRSAGKALPGIELAILDADGKP 360 KECI+VFKCGFVQMYGMTETTGTIVALPPEDH+EGL+RMRSAGKALPG+E+AILD DGKP Sbjct: 300 KECIDVFKCGFVQMYGMTETTGTIVALPPEDHVEGLERMRSAGKALPGVEIAILDPDGKP 359 Query: 361 LPPGEVGEIATRSGSNMAGYWNLPEATARTIDSDGWLRTGDAGYMDSDGYLYIHDRIKDM 420 LPP +VGEIATRSGSNMAGYWNLPEAT +TID D WLRTGDAGYMD DGY+YIHDRIKDM Sbjct: 360 LPPRQVGEIATRSGSNMAGYWNLPEATKKTIDGDNWLRTGDAGYMDEDGYVYIHDRIKDM 419 Query: 421 IISGGENIYPAEVESALCDHPDVAEAAVIGIPDDKWGEAVKAVVVMKPGKTVTATDIINF 480 IISGGENIYPAEVESA+CDHPDVAE AV+G+PDD+WGEAVKAVVVMKPGK TA DII F Sbjct: 420 IISGGENIYPAEVESAICDHPDVAEVAVVGVPDDQWGEAVKAVVVMKPGKEATAQDIIGF 479 Query: 481 TRERIAGYKTPKSVDFIPALPRNPSGKILRRSLREPYWAGKDRQVN 526 TR RIAG+KTPKS+DFIPALPRN SGKILRR LR+PYW GKDRQVN Sbjct: 480 TRTRIAGFKTPKSIDFIPALPRNASGKILRRHLRDPYWTGKDRQVN 525