BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0202.0005.p (515 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769591.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobi... 902 0.0 ref|YP_001238960.1| long-chain-fatty-acid--CoA ligase [Bradyrhiz... 860 0.0 ref|NP_947111.1| long-chain-fatty-acid--CoA ligase [Rhodopseudom... 829 0.0 ref|YP_004110063.1| AMP-dependent synthetase and ligase [Rhodops... 826 0.0 ref|YP_487203.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 826 0.0 >ref|NP_769591.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium japonicum USDA 110] dbj|BAC48216.1| blr2951 [Bradyrhizobium japonicum USDA 110] Length = 514 Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/515 (84%), Positives = 471/515 (91%), Gaps = 1/515 (0%) Query: 1 MSETSQPFLGIVSGGRRRDHAAVAERADRIASGLNELGVKPGDSVCMLMRNDIAFIEAAY 60 MSETSQ FLGIVSG RRR HA VA RADRIA+GL+++GV+PGD VCMLMRNDIAF+EAAY Sbjct: 1 MSETSQ-FLGIVSGDRRRSHAEVANRADRIANGLSKIGVRPGDCVCMLMRNDIAFLEAAY 59 Query: 61 AAMRLGAYGVPINWHFKPEEINYVLTDSGTRVLIGHADMLHPLRGAIPPDVIVLSVPTPP 120 AAMRLGAYGVPINWHFKPEEINY+L D+GT VLIGHADMLH LR AIP V VLSVPTPP Sbjct: 60 AAMRLGAYGVPINWHFKPEEINYILNDTGTSVLIGHADMLHALRDAIPSGVAVLSVPTPP 119 Query: 121 EILANYKINPDHLATPDFAIDFEAWLAQFPRYDGPVVPQPQNMIYTSGTTGHPKGVRRFA 180 EIL+NYKI+PDHLATP FAIDFE+WLAQ YDGP+VPQP +MIYTSGTTGHPKGVRR A Sbjct: 120 EILSNYKIDPDHLATPAFAIDFESWLAQHQPYDGPIVPQPMSMIYTSGTTGHPKGVRRNA 179 Query: 181 PTPEQTANAEAMRAMIYGLKPGARAILPGPLYHSAPNSFGLRSGKLGGALVLMPRFDAEE 240 PTPEQ A E MRAMIYGLKPGARAILPGPLYHSAPNSFG+R+GKLGGALVLMPRF+AEE Sbjct: 180 PTPEQQAAGERMRAMIYGLKPGARAILPGPLYHSAPNSFGIRAGKLGGALVLMPRFEAEE 239 Query: 241 FLQLIARERIDTIFMVPTMFIRLMKLPEEVRRKYDMSSLRHIIHAAAPCPPDVKRAMIEW 300 FL+LI R RIDT+FMVPTMFIRLMKLPE VRRKYD+SSLRHIIHAAAPCP DVKRAMI+W Sbjct: 240 FLELIERYRIDTVFMVPTMFIRLMKLPEAVRRKYDVSSLRHIIHAAAPCPADVKRAMIDW 299 Query: 301 WGPVIYEFYGSTESGAVTFANSEDALKKPGTVGKISPGAELRFIGDDGKEVPQGQIGEIY 360 WGPVIYEFYGSTES AVTFA SEDALKKPGTVGKISPGAELRF+G+DG+ + G+IGEIY Sbjct: 300 WGPVIYEFYGSTESSAVTFATSEDALKKPGTVGKISPGAELRFLGEDGRVLGVGEIGEIY 359 Query: 361 SRIKGNPDFTYHNKAEKRAEIDRQGFITSGDVGYIDADGYVFICDRKRDMVISGGVNIYP 420 SR+ DFTYHNK EKRAEIDR GFITSGDVGYID DGYVFICDRKRDMVISGGVNIYP Sbjct: 360 SRMAEMADFTYHNKPEKRAEIDRDGFITSGDVGYIDEDGYVFICDRKRDMVISGGVNIYP 419 Query: 421 AEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQVGVVLDIASVRAQLKTALADYKV 480 AEIE+VLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQ G+ LD A VRA+LKT+LADYKV Sbjct: 420 AEIESVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQAGITLDAADVRARLKTSLADYKV 479 Query: 481 PKHIEIQTNLPREDSGKIFKRRLRDPYWERAGRRI 515 PKHIEI++ LPREDSGKIFKRRLRDPYWE+AGR+I Sbjct: 480 PKHIEIRSGLPREDSGKIFKRRLRDPYWEQAGRKI 514 >ref|YP_001238960.1| long-chain-fatty-acid--CoA ligase [Bradyrhizobium sp. BTAi1] gb|ABQ35054.1| Putative acyl-CoA ligase [Bradyrhizobium sp. BTAi1] Length = 509 Score = 860 bits (2222), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/508 (81%), Positives = 456/508 (89%) Query: 8 FLGIVSGGRRRDHAAVAERADRIASGLNELGVKPGDSVCMLMRNDIAFIEAAYAAMRLGA 67 F GI+SG RRR HA +A+RA RIASGL +LGV GD VC+LMRNDIAFIEAAY AMRLGA Sbjct: 2 FCGIISGDRRRSHADIADRAARIASGLAQLGVGQGDCVCILMRNDIAFIEAAYGAMRLGA 61 Query: 68 YGVPINWHFKPEEINYVLTDSGTRVLIGHADMLHPLRGAIPPDVIVLSVPTPPEILANYK 127 YGVP+NWHFKPEEI+Y+L DSGT+VLIGHAD+LH L G IP V VLSVPTPPEIL+ Y+ Sbjct: 62 YGVPVNWHFKPEEIDYILKDSGTKVLIGHADLLHQLAGLIPAGVTVLSVPTPPEILSAYR 121 Query: 128 INPDHLATPDFAIDFEAWLAQFPRYDGPVVPQPQNMIYTSGTTGHPKGVRRFAPTPEQTA 187 I+ LATP+ AI E+WLAQ YDGP VPQPQNMIYTSGTTGHPKGVRR APT EQ+ Sbjct: 122 IDAHLLATPESAIALESWLAQQSPYDGPQVPQPQNMIYTSGTTGHPKGVRRNAPTAEQSQ 181 Query: 188 NAEAMRAMIYGLKPGARAILPGPLYHSAPNSFGLRSGKLGGALVLMPRFDAEEFLQLIAR 247 +AE MRA+IYGLKPG+RA+LPGPLYHSAPN+FGLR+G+LGGALVLMPRF+ E FL +I Sbjct: 182 SAERMRALIYGLKPGSRALLPGPLYHSAPNAFGLRAGRLGGALVLMPRFEPEAFLDIIQA 241 Query: 248 ERIDTIFMVPTMFIRLMKLPEEVRRKYDMSSLRHIIHAAAPCPPDVKRAMIEWWGPVIYE 307 ERIDTIFMVPTMFIRLMKLP+EVRR+YDMS+LRHIIHAAAPCP DVKRAMIEWWGPVIYE Sbjct: 242 ERIDTIFMVPTMFIRLMKLPDEVRRRYDMSTLRHIIHAAAPCPADVKRAMIEWWGPVIYE 301 Query: 308 FYGSTESGAVTFANSEDALKKPGTVGKISPGAELRFIGDDGKEVPQGQIGEIYSRIKGNP 367 FYGSTESGAVTFA SEDAL+KPGTVGK+SPGAELRF+G+DG+ +PQG+IGEIYSRI GNP Sbjct: 302 FYGSTESGAVTFATSEDALRKPGTVGKVSPGAELRFVGEDGRILPQGEIGEIYSRIAGNP 361 Query: 368 DFTYHNKAEKRAEIDRQGFITSGDVGYIDADGYVFICDRKRDMVISGGVNIYPAEIEAVL 427 DFTYHNK EKRAEIDR GFITSGDVGY+DA+GYVF+CDRKRDMVISGGVNIYPAEIEAVL Sbjct: 362 DFTYHNKPEKRAEIDRDGFITSGDVGYMDAEGYVFLCDRKRDMVISGGVNIYPAEIEAVL 421 Query: 428 HAVPGVHDCAVFGIPDAEFGEALMAVVEPQVGVVLDIASVRAQLKTALADYKVPKHIEIQ 487 HAVPGVHDCAVFGIPDAEFGEALMAVVEPQ G VLD +R +LK +LADYKVPKHIEIQ Sbjct: 422 HAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGRVLDPMEIRTRLKASLADYKVPKHIEIQ 481 Query: 488 TNLPREDSGKIFKRRLRDPYWERAGRRI 515 LPREDSGKIFKRRLRDPYWE+AGR+I Sbjct: 482 HKLPREDSGKIFKRRLRDPYWEQAGRQI 509 >ref|NP_947111.1| long-chain-fatty-acid--CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE27207.1| putative long-chain-fatty-acid-CoA ligase [Rhodopseudomonas palustris CGA009] Length = 514 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/515 (77%), Positives = 439/515 (85%), Gaps = 1/515 (0%) Query: 1 MSETSQPFLGIVSGGRRRDHAAVAERADRIASGLNELGVKPGDSVCMLMRNDIAFIEAAY 60 MSE +Q + GI+SG RRR V R IA GL LGV+PGD VC+LMRNDIAF+EA Y Sbjct: 1 MSE-NQLYHGIISGDRRRSFDEVNARVATIAGGLQALGVRPGDCVCVLMRNDIAFMEAVY 59 Query: 61 AAMRLGAYGVPINWHFKPEEINYVLTDSGTRVLIGHADMLHPLRGAIPPDVIVLSVPTPP 120 M LGAY VP+NWHFKPEE+ Y++ DS TRVLIGHAD+LH + AIP D+ VLSVPTPP Sbjct: 60 GVMTLGAYAVPVNWHFKPEEVGYIIGDSATRVLIGHADLLHSVASAIPADLTVLSVPTPP 119 Query: 121 EILANYKINPDHLATPDFAIDFEAWLAQFPRYDGPVVPQPQNMIYTSGTTGHPKGVRRFA 180 E++ANYKI PDHL+ P+ AIDF+ WLAQ YDGP PQPQNMIYTSGTTGHPKGV+RFA Sbjct: 120 EVIANYKIAPDHLSPPNNAIDFDGWLAQQKPYDGPAQPQPQNMIYTSGTTGHPKGVKRFA 179 Query: 181 PTPEQTANAEAMRAMIYGLKPGARAILPGPLYHSAPNSFGLRSGKLGGALVLMPRFDAEE 240 PTPEQ A+AE MRA IYGLKP RA+ PGPLYHSAPNSFG+R+GKLGG LVLMPRF EE Sbjct: 180 PTPEQAAHAEKMRATIYGLKPQVRALCPGPLYHSAPNSFGIRAGKLGGVLVLMPRFHPEE 239 Query: 241 FLQLIARERIDTIFMVPTMFIRLMKLPEEVRRKYDMSSLRHIIHAAAPCPPDVKRAMIEW 300 FLQL+ +IDT+FMVPTMFIRLMKLP EVR KYD+SSLRH+IHAAAPCP DVKRAMIEW Sbjct: 240 FLQLVQEHKIDTVFMVPTMFIRLMKLPAEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEW 299 Query: 301 WGPVIYEFYGSTESGAVTFANSEDALKKPGTVGKISPGAELRFIGDDGKEVPQGQIGEIY 360 WGPVIYEFYGSTESGAVTFA SEDAL KPGTVGKI+ GAEL+FI DDG EVPQG+IGEI+ Sbjct: 300 WGPVIYEFYGSTESGAVTFATSEDALNKPGTVGKIAHGAELKFIDDDGNEVPQGEIGEIF 359 Query: 361 SRIKGNPDFTYHNKAEKRAEIDRQGFITSGDVGYIDADGYVFICDRKRDMVISGGVNIYP 420 SRI GNPDFTYHNK EKRAEIDR GFITSGD+GY+D DGYVFICDRKRDMVISGGVNIYP Sbjct: 360 SRIAGNPDFTYHNKPEKRAEIDRGGFITSGDMGYLDDDGYVFICDRKRDMVISGGVNIYP 419 Query: 421 AEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQVGVVLDIASVRAQLKTALADYKV 480 AEIEA LHAV GVHDCAVFGIPDAEFGEALMA++EPQ GV LD + +R+QLK ALADYKV Sbjct: 420 AEIEAALHAVTGVHDCAVFGIPDAEFGEALMAMLEPQPGVTLDESFIRSQLKLALADYKV 479 Query: 481 PKHIEIQTNLPREDSGKIFKRRLRDPYWERAGRRI 515 PKHI+I LPREDSGKIFKRRLRDPYW AGR I Sbjct: 480 PKHIKIMPELPREDSGKIFKRRLRDPYWANAGRVI 514 >ref|YP_004110063.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU45330.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 514 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 400/515 (77%), Positives = 438/515 (85%), Gaps = 1/515 (0%) Query: 1 MSETSQPFLGIVSGGRRRDHAAVAERADRIASGLNELGVKPGDSVCMLMRNDIAFIEAAY 60 MSE +Q + GIVSG RRR V R IA GL LGVKPGD VC+LMRNDIAF+EA Y Sbjct: 1 MSE-NQLYHGIVSGDRRRSFDEVNARVATIAGGLQALGVKPGDCVCVLMRNDIAFMEAVY 59 Query: 61 AAMRLGAYGVPINWHFKPEEINYVLTDSGTRVLIGHADMLHPLRGAIPPDVIVLSVPTPP 120 M LGAY VP+NWHFKPEE+ Y++ DS TRVLIGHAD+LH + AIP D+ VLSVPTPP Sbjct: 60 GVMTLGAYAVPVNWHFKPEEVGYIIADSATRVLIGHADLLHAVASAIPADLPVLSVPTPP 119 Query: 121 EILANYKINPDHLATPDFAIDFEAWLAQFPRYDGPVVPQPQNMIYTSGTTGHPKGVRRFA 180 E++ANYKI PDHL+ P AI + W+AQ YDGP +PQPQNMIYTSGTTGHPKGV+RFA Sbjct: 120 EVIANYKIAPDHLSPPTGAIGLDGWMAQQKPYDGPALPQPQNMIYTSGTTGHPKGVKRFA 179 Query: 181 PTPEQTANAEAMRAMIYGLKPGARAILPGPLYHSAPNSFGLRSGKLGGALVLMPRFDAEE 240 PTPEQ A+AE MRA IYGLKP ARA+ PGPLYHSAPNSFG+R+GKLGG LVLMPRF EE Sbjct: 180 PTPEQAAHAEKMRATIYGLKPQARALCPGPLYHSAPNSFGIRAGKLGGVLVLMPRFHPEE 239 Query: 241 FLQLIARERIDTIFMVPTMFIRLMKLPEEVRRKYDMSSLRHIIHAAAPCPPDVKRAMIEW 300 FL L+ +IDT+FMVPTMFIRLMKLPEEVR KYD+SSLRH+IHAAAPCP DVKRAMIEW Sbjct: 240 FLALVQEHKIDTVFMVPTMFIRLMKLPEEVRAKYDVSSLRHVIHAAAPCPADVKRAMIEW 299 Query: 301 WGPVIYEFYGSTESGAVTFANSEDALKKPGTVGKISPGAELRFIGDDGKEVPQGQIGEIY 360 WGPVIYEFYGSTESGAVTFA SEDAL KPGTVGKI+ GAEL+FI DDG EVPQGQIGEI+ Sbjct: 300 WGPVIYEFYGSTESGAVTFATSEDALDKPGTVGKIAHGAELKFIDDDGNEVPQGQIGEIF 359 Query: 361 SRIKGNPDFTYHNKAEKRAEIDRQGFITSGDVGYIDADGYVFICDRKRDMVISGGVNIYP 420 SRI GNPDFTYHNK EKRAEIDR GFITSGD+GY+D DGYVFICDRKRDMVISGGVNIYP Sbjct: 360 SRIAGNPDFTYHNKPEKRAEIDRDGFITSGDMGYLDDDGYVFICDRKRDMVISGGVNIYP 419 Query: 421 AEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQVGVVLDIASVRAQLKTALADYKV 480 AEIEA LHAVPGVHDCAVFGIPDAEFGEALMA++EPQ GV +D VR++LK ALADYKV Sbjct: 420 AEIEAALHAVPGVHDCAVFGIPDAEFGEALMAMLEPQPGVTVDENFVRSRLKLALADYKV 479 Query: 481 PKHIEIQTNLPREDSGKIFKRRLRDPYWERAGRRI 515 PKHI+I LPREDSGKIFKRRLRDPYW AGR I Sbjct: 480 PKHIKIMPELPREDSGKIFKRRLRDPYWANAGRVI 514 >ref|YP_487203.1| acyl-CoA synthetase [Rhodopseudomonas palustris HaA2] gb|ABD08292.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 543 Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/511 (77%), Positives = 435/511 (85%) Query: 5 SQPFLGIVSGGRRRDHAAVAERADRIASGLNELGVKPGDSVCMLMRNDIAFIEAAYAAMR 64 +Q GI+SG R R V R IA GL LGV PGD VC+LMRND+AF+EAAYA M Sbjct: 33 NQFLHGILSGERHRSFDEVDTRVALIAGGLQRLGVAPGDCVCLLMRNDVAFLEAAYAVMM 92 Query: 65 LGAYGVPINWHFKPEEINYVLTDSGTRVLIGHADMLHPLRGAIPPDVIVLSVPTPPEILA 124 LGAY VP+NWHFKPEE+ YVL DSGTRVLIGHAD+LH G +P V VLSVPTPPEILA Sbjct: 93 LGAYAVPVNWHFKPEEVAYVLGDSGTRVLIGHADLLHQAAGVVPAGVTVLSVPTPPEILA 152 Query: 125 NYKINPDHLATPDFAIDFEAWLAQFPRYDGPVVPQPQNMIYTSGTTGHPKGVRRFAPTPE 184 NYKI+P H A P A+D + WLAQ YDGPV+PQPQNMIYTSGTTGHPKGV+RFAPTPE Sbjct: 153 NYKIDPGHRAAPQGAVDLDGWLAQQKPYDGPVLPQPQNMIYTSGTTGHPKGVKRFAPTPE 212 Query: 185 QTANAEAMRAMIYGLKPGARAILPGPLYHSAPNSFGLRSGKLGGALVLMPRFDAEEFLQL 244 Q +AEAMRA+IYGLKPGAR + PGPLYHSAPN+FG+R+G+LGG LVLMPRF+ E LQL Sbjct: 213 QAKSAEAMRALIYGLKPGARVLCPGPLYHSAPNAFGIRAGRLGGLLVLMPRFEPEALLQL 272 Query: 245 IARERIDTIFMVPTMFIRLMKLPEEVRRKYDMSSLRHIIHAAAPCPPDVKRAMIEWWGPV 304 I R RIDT+FMVPTMFIRLMKLP EVR KYD+SSLRH+IHAAAPCP D+KRAMIEWWGPV Sbjct: 273 IERHRIDTVFMVPTMFIRLMKLPPEVRAKYDVSSLRHVIHAAAPCPADIKRAMIEWWGPV 332 Query: 305 IYEFYGSTESGAVTFANSEDALKKPGTVGKISPGAELRFIGDDGKEVPQGQIGEIYSRIK 364 I EFYGSTESGAVTFA SEDAL KPGTVG+I+PGAEL+FI DDGKE+PQG+IGEI+SRI Sbjct: 333 ICEFYGSTESGAVTFATSEDALSKPGTVGRIAPGAELKFIDDDGKELPQGEIGEIFSRIA 392 Query: 365 GNPDFTYHNKAEKRAEIDRQGFITSGDVGYIDADGYVFICDRKRDMVISGGVNIYPAEIE 424 GNPDFTYHNK EKRAEIDR GFITSGDVGY+D+DGYVFICDRKRDMVISGGVNIYPAEIE Sbjct: 393 GNPDFTYHNKPEKRAEIDRDGFITSGDVGYLDSDGYVFICDRKRDMVISGGVNIYPAEIE 452 Query: 425 AVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQVGVVLDIASVRAQLKTALADYKVPKHI 484 A +HAVPGVHDCAVFGIPDAEFGEALMA++EPQ GV LD +R QLK LA YK+PKHI Sbjct: 453 AAIHAVPGVHDCAVFGIPDAEFGEALMAMLEPQPGVTLDEGYLREQLKHVLAGYKIPKHI 512 Query: 485 EIQTNLPREDSGKIFKRRLRDPYWERAGRRI 515 EI LPREDSGKIFKRRLRDPYW +AGR I Sbjct: 513 EIMAQLPREDSGKIFKRRLRDPYWAKAGRVI 543