BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0201.0011.p (274 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001203159.1| putative signal peptide [Bradyrhizobium sp. ... 316 2e-84 ref|YP_001242839.1| hypothetical protein BBta_7050 [Bradyrhizobi... 311 7e-83 ref|NP_770958.1| hypothetical protein blr4318 [Bradyrhizobium ja... 283 2e-74 ref|YP_002360572.1| hypothetical protein Msil_0229 [Methylocella... 168 7e-40 ref|YP_001756210.1| putative signal peptide [Methylobacterium ra... 162 7e-38 >ref|YP_001203159.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL74922.1| conserved hypothetical protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 424 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/256 (66%), Positives = 202/256 (78%), Gaps = 2/256 (0%) Query: 7 ISRRVLLVGFWLAGTS-LAGAQVKKRGNDQGIGGTGITGSDQGIGGTGIVGVIQRFGSIY 65 +SRR LL G WLAGTS LA Q +K + G G DQG+GGTGIVGVIQRFGSI+ Sbjct: 7 VSRRALLAGLWLAGTSALAWGQTRKGDDQGIGGTGIRGGQDQGMGGTGIVGVIQRFGSIF 66 Query: 66 VNGERVAYAPDVPVRIDGEATSAKALRIGQLARVVAQRDAGGTLSTKRIDVTSEVTGPVE 125 VNGERV+YAPDVPV IDGE +S KAL+IGQLARV+A+RDAGGTLST RID+ SEVTG +E Sbjct: 67 VNGERVSYAPDVPVTIDGETSSVKALKIGQLARVLARRDAGGTLSTGRIDIVSEVTGAIE 126 Query: 126 QMKPGGLTVLGQTVAWTGRESWLKVGAHVAVFGLRRTDGVVVASLVQERHDAAARVAGPL 185 ++PG LTVLGQTV G+ESW KVG+HVAVFGLRR+DGV+VASLV R +R+ G + Sbjct: 127 AVRPGELTVLGQTVISPGQESWRKVGSHVAVFGLRRSDGVIVASLVDPRTVPTSRITGVV 186 Query: 186 ERDRAGALRIGELKLAGVDAALVGQRVQAEGHLAQGVMQVSRSRADDFSDLAGANRLLIE 245 RDR G L IG L++ GVD ALVGQRVQAEG +AQGVMQV+R R DD + A A+RLL+E Sbjct: 187 VRDRTG-LSIGGLRITGVDQALVGQRVQAEGRVAQGVMQVARIRPDDLKEFARASRLLVE 245 Query: 246 AYVRRVGNDLQFGSGF 261 YV+RVGNDL+FGSG+ Sbjct: 246 GYVQRVGNDLRFGSGY 261 >ref|YP_001242839.1| hypothetical protein BBta_7050 [Bradyrhizobium sp. BTAi1] gb|ABQ38933.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 391 Score = 311 bits (797), Expect = 7e-83, Method: Compositional matrix adjust. Identities = 180/263 (68%), Positives = 215/263 (81%), Gaps = 4/263 (1%) Query: 1 VKRPPVISRRVLLVGFWLAGTS-LAGAQVKKRGNDQGIGGTGITG-SDQGIGGTGIVGVI 58 + RPP +SRR LL G WLAG+S LA Q +K GNDQG+GGTGITG DQG+GGTGIVGVI Sbjct: 1 MSRPPGLSRRSLLAGIWLAGSSALAWGQTRK-GNDQGLGGTGITGGQDQGMGGTGIVGVI 59 Query: 59 QRFGSIYVNGERVAYAPDVPVRIDGEATSAKALRIGQLARVVAQRDAGGTLSTKRIDVTS 118 QRFGSI+VNGERV+YA DVPVRIDGEA SAKAL+IGQLARV+AQRD GTL+T+ ID+ S Sbjct: 60 QRFGSIFVNGERVSYAADVPVRIDGEAASAKALKIGQLARVLAQRDGKGTLTTRSIDIVS 119 Query: 119 EVTGPVEQMKPGGLTVLGQTVAWTGRESWLKVGAHVAVFGLRRTDGVVVASLVQERHDAA 178 EVTGP+E ++PG LTVLGQTV G+ESW K+G HVAVFGLRR+DGV+VASLV R Sbjct: 120 EVTGPIEAIRPGELTVLGQTVVSPGQESWRKIGTHVAVFGLRRSDGVIVASLVDPRQTTV 179 Query: 179 ARVAGPLERDRAGALRIGELKLAGVDAALVGQRVQAEGHLAQGVMQVSRSRADDFSDLAG 238 +RV+G + RDR G L +G L LAGVD AL+G+R+QAEG +A GV+QV+R R DD D A Sbjct: 180 SRVSGVVVRDRNG-LALGGLHLAGVDPALIGRRIQAEGRMAHGVLQVTRIRPDDLQDFAR 238 Query: 239 ANRLLIEAYVRRVGNDLQFGSGF 261 A+RLL+E YVRRVG++LQFGSG+ Sbjct: 239 ASRLLVEGYVRRVGSELQFGSGY 261 >ref|NP_770958.1| hypothetical protein blr4318 [Bradyrhizobium japonicum USDA 110] dbj|BAC49583.1| blr4318 [Bradyrhizobium japonicum USDA 110] Length = 405 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 178/262 (67%), Positives = 205/262 (78%), Gaps = 3/262 (1%) Query: 1 VKRPPVISRRVLLVGFWLAGTSLAGAQVKKRGNDQGIGGTGITG-SDQGIGGTGIVGVIQ 59 + R P+ISRR+LL GFWLAGT++A AQV+ RG DQGIGGTGIT D GIGGTGIVGVIQ Sbjct: 1 MSRAPLISRRLLLTGFWLAGTAIAHAQVR-RGTDQGIGGTGITRGDDHGIGGTGIVGVIQ 59 Query: 60 RFGSIYVNGERVAYAPDVPVRIDGEATSAKALRIGQLARVVAQRDAGGTLSTKRIDVTSE 119 RFGSIYVNGER+ YA DVPVRIDGEA SA +LRIGQLARVVA R A GTL T+ I + SE Sbjct: 60 RFGSIYVNGERITYASDVPVRIDGEAASANSLRIGQLARVVATRRADGTLVTRSIAIASE 119 Query: 120 VTGPVEQMKPGGLTVLGQTVAWTGRESWLKVGAHVAVFGLRRTDGVVVASLVQERHDAAA 179 V+GP+EQ+K LTVLGQ + +G+ES L GA VAV+GLRRTDGV+VASLV+ R DAAA Sbjct: 120 VSGPIEQVKGNELTVLGQKIVTSGKESKLHAGAQVAVYGLRRTDGVIVASLVEPRRDAAA 179 Query: 180 RVAGPLERDRAGALRIGELKLAGVDAALVGQRVQAEGHLAQGVMQVSRSRADDFSDLAGA 239 RV G +ER G L IG L+L GVD LVG RVQ EG QG MQ +R+R DDFSDL GA Sbjct: 180 RVTGLVERGPDG-LHIGGLRLNGVDPLLVGHRVQIEGSANQGAMQAARTRIDDFSDLVGA 238 Query: 240 NRLLIEAYVRRVGNDLQFGSGF 261 +RL IEAYV+R+G +LQ GSG Sbjct: 239 SRLSIEAYVQRMGANLQLGSGL 260 >ref|YP_002360572.1| hypothetical protein Msil_0229 [Methylocella silvestris BL2] gb|ACK49210.1| conserved hypothetical protein; putative signal peptide [Methylocella silvestris BL2] Length = 441 Score = 168 bits (426), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 129/276 (46%), Positives = 164/276 (59%), Gaps = 21/276 (7%) Query: 1 VKRPPVISRRVLLVGFWLAGT--SLAG--AQVKKRGNDQGIGGTGIT------GSDQGIG 50 + R P+ SRR F L T S AG A+ DQGIGGTG + SD+GIG Sbjct: 1 MSRSPLFSRRDF---FALMATLPSCAGLAARAIAEPRDQGIGGTGASFTPDEKESDRGIG 57 Query: 51 GTGIVGVIQRFGSIYVNGERVAYAPDVPVRIDGEATSAKALRIGQLARVVAQRDAGGTLS 110 GTG++G I++FGSI VN R+AY D VRIDGE A L+IG + R+VA D GG LS Sbjct: 58 GTGVIGTIRKFGSIIVNDLRIAYPKDAVVRIDGETARASQLKIGHVVRIVAL-DVGGQLS 116 Query: 111 TKRIDVTSEVTGPVEQMKPGGLTVLGQTVAWTG-----RESWLKVGAHVAVFGLRRTDGV 165 T+RI+VTSE G +E LTVLGQ VA +G R +W KVG H+AV GLRR DGV Sbjct: 117 TRRINVTSEAVGRIESADARNLTVLGQKVALSGLPKTARRAW-KVGDHIAVSGLRRPDGV 175 Query: 166 VVASLVQERHDAAARVAGPLERDRAGALRIGELKLAGVDAALVGQRVQAEGHLAQGVMQV 225 + ASL++ R +VAGP++ G IG LKLA +D LVGQR G L+ G V Sbjct: 176 IAASLIEPRASDLQQVAGPIDVAADGTPAIGGLKLAHLDPTLVGQRAVLRGALSGGAFHV 235 Query: 226 SRSRADDFSDLAGANRLLIEAYVRRVGNDLQFGSGF 261 + R ++ + L G +L +EAYV R + L+ GSG Sbjct: 236 TEGR-NESALLGGVQKLSVEAYVERTRDGLRLGSGL 270 >ref|YP_001756210.1| putative signal peptide [Methylobacterium radiotolerans JCM 2831] gb|ACB25527.1| conserved hypothetical protein; putative signal peptide [Methylobacterium radiotolerans JCM 2831] Length = 438 Score = 162 bits (409), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 129/285 (45%), Positives = 165/285 (57%), Gaps = 21/285 (7%) Query: 7 ISRRVLLVGFWLAGTSLAGA-QVKKRGNDQGIGGTGITGSDQGIGGT-----------GI 54 ++RR +L A T L G + ++ DQGIGGTG+ +D+ G+ G+ Sbjct: 5 LNRRFVLRLLAGAATLLPGTIRSQESPRDQGIGGTGMMRTDEPRNGSLGEGDRGIGGTGV 64 Query: 55 VGVIQRFGSIYVNGERVAYAPDVPVRIDGEATSAKALRIGQLARVVAQRDAGGTLSTKRI 114 +G I+RFGSI VN R+AY P+V VRIDG A A L+IGQ+ VVA R GG L+T+RI Sbjct: 65 IGTIRRFGSIVVNDLRIAYPPEVEVRIDGTAARAADLKIGQVVHVVA-RPEGGGLATRRI 123 Query: 115 DVTSEVTGPVEQMKPGGLTVLGQTVAWTGRESWLKVGAHVAVFGLRRTDGVVVASLVQER 174 DVTSEV GPVE + PG L VLGQ V+ G + GA VAV GLRR DGV+VASL++ R Sbjct: 124 DVTSEVVGPVESVAPGRLVVLGQRVSTAGLSGAWQPGARVAVSGLRRPDGVIVASLIEPR 183 Query: 175 HDAAARVAGPLERDRAGALRIGELKLAGVDAALVGQRVQAEGHLAQGVMQVSRSRADDFS 234 RVAGP+ R AG L IG L+LAG DA G+R G A GV+ V+ + Sbjct: 184 DSGPDRVAGPV-RRLAGGLGIGGLRLAGADALPPGKRALVTGRAANGVLTVTSAAQVGLP 242 Query: 235 DLAGANRLLIEAYVRRVGNDLQFGSGF-------XRCSRSASSRA 272 G R+ IEAY+ R G+ L G+G+ R R S RA Sbjct: 243 FPPGLKRVSIEAYIGRAGSGLDIGAGYAVAGRPVARVPRDGSVRA 287