BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0201.0003.p (424 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001242834.1| putative O-antigen polymerase [Bradyrhizobiu... 451 e-124 ref|NP_770953.1| hypothetical protein bll4313 [Bradyrhizobium ja... 424 e-116 ref|YP_578032.1| O-antigen polymerase [Nitrobacter hamburgensis ... 371 e-100 ref|ZP_08630762.1| hypothetical protein CSIRO_3872 [Bradyrhizobi... 370 e-100 ref|YP_001207108.1| putative O-antigen ligase (RfaL-like) [Brady... 358 8e-97 >ref|YP_001242834.1| putative O-antigen polymerase [Bradyrhizobium sp. BTAi1] gb|ABQ38928.1| putative O-antigen polymerase [Bradyrhizobium sp. BTAi1] Length = 448 Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust. Identities = 238/388 (61%), Positives = 287/388 (73%) Query: 19 RDRVRAWSGSVAYVRATDTLIALAAASLPWSTTALAVFMLLWLVAEIPTVDWEQFMLDLA 78 R W + Y+R DT++ L A +LPWSTTA A F++LWLV IPT+DW++ + LA Sbjct: 22 RSVATPWVEAPLYLRLADTMVVLTAVALPWSTTATAFFIVLWLVLLIPTIDWDELVRSLA 81 Query: 79 EPAFALPIALVALAVIGVAWSETSWAERLQGIKPLGKLLLLPFLLGYFQRSQRGLWVFLA 138 P A+P+A LA IGV WS W ++G+ P+ KLLL+PFLL +F+RS R WV Sbjct: 82 TPVSAMPLAFFVLADIGVLWSGGPWDSGIKGLNPVSKLLLIPFLLYHFRRSPRAAWVLAG 141 Query: 139 FLVSCTVLMILSWIVLALPQLKLAHTASDGVPVKNYLDQSQEFALCAFALALPALTALRA 198 F+ SCT+LMILSWIV+ P K++ TAS GVPVKNY+DQSQEFA CAFALA L A Sbjct: 142 FIGSCTLLMILSWIVVVDPSWKISATASSGVPVKNYIDQSQEFAFCAFALAPLLLLAWTR 201 Query: 199 RQWRIAAGAIALMLLFIANMLYVVSARTALVYMPVLLILFASLHLSRRATRLLFASVAVA 258 RQ +AAG + L+ F+ANML+V SARTAL+Y+PVLL+LF HLSRRA L A A Sbjct: 202 RQLLMAAGLLGLIAGFLANMLFVASARTALIYLPVLLVLFGVRHLSRRAMLGLVAVALAA 261 Query: 259 SLVVWTTSPYLRQRIADVGIEYRAHDASGIASTAQRLTYWRKSVKFIAGAPWLGHGTGAI 318 +VWTTSPYLRQR+ADV IEYRA+DA+ ASTAQRLTYWRKS+KF A AP LGHGTGAI Sbjct: 262 GTLVWTTSPYLRQRVADVAIEYRAYDANVPASTAQRLTYWRKSLKFFADAPLLGHGTGAI 321 Query: 319 RQMFAQDAVGQTGLQAEVINNPHNQTLNVAIQWGLIGIVLLYAMWTSHVGLFAGRDPVSW 378 R +F DA GQTGL+AEV+NNPHNQTLNVAIQWGL G+ +LYAMW H+ LF P +W Sbjct: 322 RHLFESDAAGQTGLRAEVVNNPHNQTLNVAIQWGLAGVAVLYAMWAVHLRLFWRMHPAAW 381 Query: 379 IGLAVVVQNITSSLLNSHLSDFHEGWMY 406 IGLA+VVQN+ SSLLNSHL DF+EGWMY Sbjct: 382 IGLAIVVQNLVSSLLNSHLFDFNEGWMY 409 >ref|NP_770953.1| hypothetical protein bll4313 [Bradyrhizobium japonicum USDA 110] dbj|BAC49578.1| bll4313 [Bradyrhizobium japonicum USDA 110] Length = 426 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 230/393 (58%), Positives = 287/393 (73%), Gaps = 1/393 (0%) Query: 19 RDRVRAWSGSVAYVRATDTLIALAAASLPWSTTALAVFMLLWLVAEIPTVDWEQFMLDLA 78 R ++W S A +RA D L+ L AASLPWSTTA ++F+ LWL+A PT+DW + +L Sbjct: 18 RKGWQSWRNSAALLRAADVLVILIAASLPWSTTAPSIFVGLWLLAVTPTIDWRDYAYELT 77 Query: 79 EPAFALPIALVALAVIGVAWSETSWAERLQGIKPLGKLLLLPFLLGYFQRSQRGLWVFLA 138 PAFALP AL+ LA++GV WS+ +W +RL IKP+ KL+L+P LL +F RS+RG V LA Sbjct: 78 RPAFALPFALLLLALLGVLWSDGAWPDRLHAIKPVAKLVLIPPLLYHFSRSERGFQVCLA 137 Query: 139 FLVSCTVLMILSWIVLALPQLKLAHTASDGVPVKNYLDQSQEFALCAFALALPALTALRA 198 FL SC +L + SW+VL P K+A TAS GVPVKNY+DQSQEF LCAF LALPALT R Sbjct: 138 FLASCALLAVFSWVVLLNPAWKIAATASSGVPVKNYIDQSQEFTLCAFTLALPALTFWRG 197 Query: 199 RQWRIAAGAIALMLLFIANMLYVVSARTALVYMPVLLILFASLHLSRRATRLLFASVAVA 258 + A +AL+LL+ NM++V SARTAL+Y+PVLL LFA HLSRRA +L A A Sbjct: 198 GRAIAATACLALILLYATNMVFVASARTALLYIPVLLALFAWKHLSRRAALVLLAGAVAA 257 Query: 259 SLVVWTTSPYLRQRIADVGIEYR-AHDASGIASTAQRLTYWRKSVKFIAGAPWLGHGTGA 317 S + WTTS YLRQRI D+ +EYR H+ ASTAQRLTYWRKS+ AP +GHGTGA Sbjct: 258 SALAWTTSSYLRQRITDIAVEYRHGHEDISRASTAQRLTYWRKSLHAFTEAPLIGHGTGA 317 Query: 318 IRQMFAQDAVGQTGLQAEVINNPHNQTLNVAIQWGLIGIVLLYAMWTSHVGLFAGRDPVS 377 I++ F + A G++ L AE+++NPHNQTLNVA+QWGL+G+ LLYAMW + + LF G + Sbjct: 318 IKRQFERAATGESSLDAEIVSNPHNQTLNVAVQWGLLGVALLYAMWIAQLRLFLGEGLAA 377 Query: 378 WIGLAVVVQNITSSLLNSHLSDFHEGWMYVIGV 410 WIGL VV QNI SSLLNSHL DFHEGWMYV+GV Sbjct: 378 WIGLVVVAQNIASSLLNSHLFDFHEGWMYVLGV 410 >ref|YP_578032.1| O-antigen polymerase [Nitrobacter hamburgensis X14] gb|ABE63572.1| O-antigen polymerase [Nitrobacter hamburgensis X14] Length = 434 Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust. Identities = 191/380 (50%), Positives = 253/380 (66%), Gaps = 2/380 (0%) Query: 32 VRATDTLIALAAASLPWSTTALAVFMLLWLVAEIPTVDWEQFMLDLAEPAFALPIALVAL 91 +R D L L AASLPWST+ A+F ++WL A +PT++ L P LP+A L Sbjct: 37 LRNLDILAVLIAASLPWSTSLPAIFAVIWLFALVPTIEPTLLQL-FKRPICILPVAFFVL 95 Query: 92 AVIGVAWSETSWAERLQGIKPLGKLLLLPFLLGYFQRSQRGLWVFLAFLVSCTVLMILSW 151 A+ G WS W RL + PL KLL++P L+ +F+RS RG WVF AFLVSC +LMI+SW Sbjct: 96 ALAGTLWSSAPWTARLHAVGPLAKLLVIPLLIYHFRRSSRGQWVFTAFLVSCALLMIMSW 155 Query: 152 IVLALPQLKLAHTASDGVPVKNYLDQSQEFALCAFALALPALTALRARQWRIAAGAIALM 211 IV P+L L A GVP+KNY+DQSQEFALCA ALA P + L ++ + AA + + Sbjct: 156 IVAFDPRLALKSGAYYGVPIKNYIDQSQEFALCAVALAYPVVHLLLQKRIKEAALLLIVA 215 Query: 212 LLFIANMLYVVSARTALVYMPVLLILFASLHLSRRATRLLFASVAVASLVVWTTSPYLRQ 271 + F+ANM++VV +RTALV MPV+L +F LHL+ R + + +A +V+W SP L+ Sbjct: 216 VSFVANMMFVVVSRTALVTMPVMLGIFMFLHLTPRRMIAVSCTTLLAGVVMWFASPSLQS 275 Query: 272 RIADVGIEYRAHDASGIA-STAQRLTYWRKSVKFIAGAPWLGHGTGAIRQMFAQDAVGQT 330 R+A +Y ++ S A S RL +WRKS++F AP GHGTG+++ +F AVGQT Sbjct: 276 RVASFSSQYDQYETSDQATSIGLRLEFWRKSLRFFVDAPLAGHGTGSVQGLFTAAAVGQT 335 Query: 331 GLQAEVINNPHNQTLNVAIQWGLIGIVLLYAMWTSHVGLFAGRDPVSWIGLAVVVQNITS 390 G AEV+NNPHNQTLN A+QWG +GI++LYAMW H+ LF G W+GL VV QN+ + Sbjct: 336 GAAAEVVNNPHNQTLNAAVQWGSLGILVLYAMWLFHLSLFRGTSLADWVGLLVVAQNMMT 395 Query: 391 SLLNSHLSDFHEGWMYVIGV 410 SL NSHL DFHEGWMYV+GV Sbjct: 396 SLFNSHLFDFHEGWMYVLGV 415 >ref|ZP_08630762.1| hypothetical protein CSIRO_3872 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06616.1| hypothetical protein CSIRO_3872 [Bradyrhizobiaceae bacterium SG-6C] Length = 430 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/403 (48%), Positives = 261/403 (64%), Gaps = 11/403 (2%) Query: 14 PPARWRDRVRAWSGSVAYVRATDTLIALAAASLPWSTTALAVFMLLWLVAEIPTVDWEQF 73 PP+ R+ + A+++A D + L A SLPWST+ +A+F + WL P + W++F Sbjct: 13 PPSIRRN-------TAAWMKAADIAVVLLAISLPWSTSLVAIFAVAWLALLTPAIQWQEF 65 Query: 74 MLDLAEPAFALPIALVALAVIGVAWSE-TSWAERLQGIKPLGKLLLLPFLLGYFQRSQRG 132 + + PA P+ L ALAV+G W+ WA R GI P KLL +P L +F+RS RG Sbjct: 66 LDSMKRPASLTPLLLFALAVVGTLWATGVPWAARFHGINPAAKLLAIPVLFYHFERSGRG 125 Query: 133 LWVFLAFLVSCTVLMILSWIVLALPQLKLAHTASDGVPVKNYLDQSQEFALCAFALALPA 192 LWV LAFL SCT +M+ SW++ P+L S GVPVKNY+ QSQEFALCAFA A Sbjct: 126 LWVVLAFLASCTAVMLASWLMFVDPRLAFDPARSVGVPVKNYIAQSQEFALCAFAAFGAA 185 Query: 193 LTALRARQWRIAAGAIALMLLFIANMLYVVSARTALVYMPVLLILFASLHLSRRATRLLF 252 + +A + A + L + F+ANM +V S+RT V +PVL ++ A+ + S R L Sbjct: 186 IYTAKAGRRGTAVLLLGLGVGFLANMAFVASSRTVFVCIPVLFVVLAARYFSGRGFVALM 245 Query: 253 ASVAVASLVVWTTSPYLRQRIADVGIEY-RAHDASGIASTAQRLTYWRKSVKFIAGAPWL 311 A VA + W +SPYLR R+ +G EY R H ++ + S +RL +WRKS+KF A AP + Sbjct: 246 AGVAAVTAAAWMSSPYLRMRVDMIGSEYQRYHQSNAVTSVGERLEFWRKSIKFAAEAPLI 305 Query: 312 GHGTGAIRQMFAQDAVGQTGLQAEVINNPHNQTLNVAIQWGLIGIVLLYAMWTSHVGLFA 371 GHGTG+ + +F QDAVGQTG A+VI NPHNQTLNVA+QWGLIG ++LYAMW +H+ LF Sbjct: 306 GHGTGSTKTLFEQDAVGQTGASAQVIGNPHNQTLNVAVQWGLIGCLVLYAMWLAHLRLFI 365 Query: 372 GRDPVSWIGLAVVVQNITSSLLNSHLSDFHEGWMYV--IGVXG 412 G +WIGL VV+N SSLLNSHL DFHEGW+YV +GV G Sbjct: 366 GSGMAAWIGLVAVVENFVSSLLNSHLFDFHEGWIYVLAVGVVG 408 >ref|YP_001207108.1| putative O-antigen ligase (RfaL-like) [Bradyrhizobium sp. ORS 278] emb|CAL78891.1| putative O-antigen ligase (RfaL-like) [Bradyrhizobium sp. ORS 278] Length = 427 Score = 358 bits (920), Expect = 8e-97, Method: Compositional matrix adjust. Identities = 191/396 (48%), Positives = 259/396 (65%), Gaps = 9/396 (2%) Query: 17 RWRDRVRAWSGSVAYVRATDTLIALAAASLPWSTTALAVFMLLWLVAEIPTVDWEQFMLD 76 RWRD AW +V D + L AASLPWST+ +++ ++ L+ +P +D ++ + Sbjct: 16 RWRDPA-AWRTTV------DVVAVLLAASLPWSTSLVSILGVVMLITMVPFLDLDRLLQI 68 Query: 77 LAEPAFALPIALVALAVIGVAWSETSWAERLQGIKPLGKLLLLPFLLGYFQRSQRGLWVF 136 L P PIAL LA++G WS+ +W RL + P KLL+LP LL +FQRS+RGLWVF Sbjct: 69 LKRPISLAPIALFVLALVGTLWSDAAWGARLYAVGPAAKLLVLPALLYHFQRSERGLWVF 128 Query: 137 LAFLVSCTVLMILSWIVLALPQLKLAHTASDGVPVKNYLDQSQEFALCAFALALPALTAL 196 AFL SC +++++S V P L L A G+ VKNY+DQ QEF+LCA ALA P L Sbjct: 129 TAFLASCVLMVVMSTAVGFNPALALKANADRGIFVKNYIDQGQEFSLCAVALAYPIAQLL 188 Query: 197 RARQWRIAAGAIALMLLFIANMLYVVSARTALVYMPVLLILFASLHLSRRATRLLFASVA 256 RAR++ A A+M+ F+ANM+++V +RTALV +PVLL +F +HL RA L+ S Sbjct: 189 RARRFVPAGILTAIMIAFLANMIFIVVSRTALVTIPVLLAVFGLIHLKWRANLLIAVSAV 248 Query: 257 VASLVVWTTSPYLRQRIADVGIEYRAH-DASGIASTAQRLTYWRKSVKFIAGAPWLGHGT 315 V L W+ SP L+Q++A +Y+ + + + S +RL +WRKS+ F A AP +GHG+ Sbjct: 249 VIGLAAWSVSPQLQQKVATFTQQYQDYRNDRAVTSIGERLEFWRKSLHFFADAPVIGHGS 308 Query: 316 GAIRQMFAQDAVGQTGLQA-EVINNPHNQTLNVAIQWGLIGIVLLYAMWTSHVGLFAGRD 374 G+ R +F A +T L A V+ NPHNQTLNVA+QWG +G+V+LYAMW H+ LF G Sbjct: 309 GSTRHLFELAASDRTDLAAGTVVGNPHNQTLNVAVQWGTLGVVVLYAMWALHLLLFRGDG 368 Query: 375 PVSWIGLAVVVQNITSSLLNSHLSDFHEGWMYVIGV 410 V WIGL VVVQNI +SL NSH+ DFHEGWMYVIGV Sbjct: 369 LVPWIGLLVVVQNIFTSLFNSHIFDFHEGWMYVIGV 404