BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0201.0002.p (418 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770952.1| hypothetical protein blr4312 [Bradyrhizobium ja... 752 0.0 ref|ZP_08628359.1| hypothetical protein CSIRO_1433 [Bradyrhizobi... 545 e-153 ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopse... 545 e-153 ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodo... 535 e-150 ref|YP_001993217.1| branched-chain amino acid ABC transporter pe... 531 e-149 >ref|NP_770952.1| hypothetical protein blr4312 [Bradyrhizobium japonicum USDA 110] dbj|BAC49577.1| blr4312 [Bradyrhizobium japonicum USDA 110] Length = 411 Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/389 (92%), Positives = 375/389 (96%) Query: 29 TAATAQNKYDPGASDGEIKIGNIMPYSGPASSYGVIGKTEAAFFRMINDRGGINGRKINF 88 T A+AQ KYDPGASD +IKIGNIMPYSGPASSYGVIGKTEAAFFRMIND+GGINGRKINF Sbjct: 22 TPASAQKKYDPGASDTDIKIGNIMPYSGPASSYGVIGKTEAAFFRMINDQGGINGRKINF 81 Query: 89 ISYDDAYSPPKAIEQVRKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQLFVASGGTK 148 ISYDDAYSPPKAIEQ RKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQLFVASGGTK Sbjct: 82 ISYDDAYSPPKAIEQARKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQLFVASGGTK 141 Query: 149 FGDPKNFPWTMGFQPNYQSEGRIYAKYIRDKFPDSKIAVFWQNDDAGKDQFKGLKDGLGD 208 FGDP+NFPWTMGFQPNYQSEGRIYAKYIRD FP+ KIAVFWQNDDAGKDQFKGLKDGLGD Sbjct: 142 FGDPRNFPWTMGFQPNYQSEGRIYAKYIRDNFPNGKIAVFWQNDDAGKDQFKGLKDGLGD 201 Query: 209 KVGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVGELGWKPKFFL 268 K GMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVGELGWKPKFFL Sbjct: 202 KAGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVGELGWKPKFFL 261 Query: 269 ANTATSVASVLKPAGLEFSKGIISTAYLKDPTDPTWDKDPAVQSWRAFMDKYYPDGDKAN 328 ANTATSVASVLKPAGL++SK IIST YLKDPTDPTWDKDPAV WR FMDKYYPDGDKAN Sbjct: 262 ANTATSVASVLKPAGLDYSKDIISTVYLKDPTDPTWDKDPAVVKWREFMDKYYPDGDKAN 321 Query: 329 ANNLYGYVQAEAMMQVLRQCGDNLTRENVMKQAASLKNFHSDLMLPGVMVNTSPDDYFPI 388 +NN+YGYVQAEAM QVL+QCGDNLTRENVMKQAA+LK+FH+DLMLPG+MVNTSPDDYFPI Sbjct: 322 SNNIYGYVQAEAMAQVLKQCGDNLTRENVMKQAANLKDFHTDLMLPGIMVNTSPDDYFPI 381 Query: 389 EQMQLMRFNGEAWELFGDVITGEVGHEAS 417 EQMQLMRFNG+AWELFGDVITGEVGHE S Sbjct: 382 EQMQLMRFNGQAWELFGDVITGEVGHERS 410 >ref|ZP_08628359.1| hypothetical protein CSIRO_1433 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08862.1| hypothetical protein CSIRO_1433 [Bradyrhizobiaceae bacterium SG-6C] Length = 409 Score = 545 bits (1405), Expect = e-153, Method: Compositional matrix adjust. Identities = 258/398 (64%), Positives = 317/398 (79%) Query: 16 SAALIATSVALTATAATAQNKYDPGASDGEIKIGNIMPYSGPASSYGVIGKTEAAFFRMI 75 +A ++A+T+ A AQ KYD GASD EIKIGNIMPYSGPAS+YGVIGK E A+F+MI Sbjct: 10 TAVTAMAALAMTSGHALAQKKYDTGASDTEIKIGNIMPYSGPASAYGVIGKMEEAYFKMI 69 Query: 76 NDRGGINGRKINFISYDDAYSPPKAIEQVRKLVESDEVLLIFQPLGTPSNSAIMKYMNAK 135 N++GGINGRKINFI+YDD YSPPKA+EQ RKLVESDEVLL+F PLGTPSNSAI KY+NAK Sbjct: 70 NEQGGINGRKINFITYDDGYSPPKAVEQARKLVESDEVLLVFGPLGTPSNSAIQKYLNAK 129 Query: 136 KVPQLFVASGGTKFGDPKNFPWTMGFQPNYQSEGRIYAKYIRDKFPDSKIAVFWQNDDAG 195 KVPQLFVA+G TKFG+PK FPWTMG+QP YQSE R+YAKY+ PD+KIAV +QNDD G Sbjct: 130 KVPQLFVATGATKFGEPKEFPWTMGWQPAYQSESRVYAKYLLANKPDAKIAVMYQNDDFG 189 Query: 196 KDQFKGLKDGLGDKVGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIR 255 KD KGLKDGLG K I+A+ SYEVS+P+IDS I+ L SGAD+F S+ PK +AQAI+ Sbjct: 190 KDMLKGLKDGLGAKASQIVAEDSYEVSEPTIDSHIIKLKASGADVFVSFTTPKFAAQAIK 249 Query: 256 KVGELGWKPKFFLANTATSVASVLKPAGLEFSKGIISTAYLKDPTDPTWDKDPAVQSWRA 315 KV ELGWKP + +N SV SVLKPAG E ++GI+S AY KD DP WD D ++ + A Sbjct: 250 KVAELGWKPTYIQSNVGASVGSVLKPAGFENAQGILSAAYAKDGADPQWDNDEGMKKFYA 309 Query: 316 FMDKYYPDGDKANANNLYGYVQAEAMMQVLRQCGDNLTRENVMKQAASLKNFHSDLMLPG 375 F+ KY PD +K + + +YGY QA+ M+QVL+Q GDNLTREN+MKQAASLK+F D +LPG Sbjct: 310 FLAKYAPDMNKTDGSVVYGYGQAQTMVQVLKQAGDNLTRENIMKQAASLKDFVPDTLLPG 369 Query: 376 VMVNTSPDDYFPIEQMQLMRFNGEAWELFGDVITGEVG 413 V +NTSP D++PI+Q+Q+M+F GE +EL G +ITG +G Sbjct: 370 VKINTSPTDFYPIDQLQIMQFKGEKYELQGPIITGGMG 407 >ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07717.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 409 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 269/414 (64%), Positives = 326/414 (78%), Gaps = 7/414 (1%) Query: 1 MPTRFGYIGAIAAFASAALIATSVALTATAATAQNKYDPGASDGEIKIGNIMPYSGPASS 60 MP R + A++A A+A L+A S TAA AQ KYDPGASD EIKIGNIMPYSGPAS+ Sbjct: 1 MPHRALRLAAVSA-ATALLVAAS-----TAAFAQKKYDPGASDTEIKIGNIMPYSGPASA 54 Query: 61 YGVIGKTEAAFFRMINDRGGINGRKINFISYDDAYSPPKAIEQVRKLVESDEVLLIFQPL 120 YGVIG+TEAA+F+ IND GGINGRKINF+SYDDAYSPPKA+EQ RKLVESDEVLLIF L Sbjct: 55 YGVIGRTEAAYFKKINDAGGINGRKINFVSYDDAYSPPKAVEQARKLVESDEVLLIFNSL 114 Query: 121 GTPSNSAIMKYMNAKKVPQLFVASGGTKFGDPKNFPWTMGFQPNYQSEGRIYAKYIRDKF 180 GTPSNSAI KYMNAKKVPQLFVA+G TK+ DPK+FPWTMG+QPNYQSE +IYAKYI + Sbjct: 115 GTPSNSAIQKYMNAKKVPQLFVATGATKWNDPKDFPWTMGWQPNYQSETQIYAKYILKQM 174 Query: 181 PDSKIAVFWQNDDAGKDQFKGLKDGLGDKV-GMIIADKSYEVSDPSIDSQIVALHDSGAD 239 P SKIAV +QNDD GKD KGLKDGLG K MI+ ++SYE S+P+ID+ IV L +GAD Sbjct: 175 PTSKIAVLYQNDDYGKDYLKGLKDGLGAKASSMIVMEESYETSEPTIDNHIVKLKSTGAD 234 Query: 240 IFFSWAAPKGSAQAIRKVGELGWKPKFFLANTATSVASVLKPAGLEFSKGIISTAYLKDP 299 IF + PK +AQAI+K E+GWKP FL N + SV SVLKPAG E ++ IIS AYLKD Sbjct: 235 IFINITTPKFAAQAIKKNAEIGWKPIHFLNNVSASVGSVLKPAGFENAQDIISAAYLKDV 294 Query: 300 TDPTWDKDPAVQSWRAFMDKYYPDGDKANANNLYGYVQAEAMMQVLRQCGDNLTRENVMK 359 TDP W D ++ + AFMDK +P+G+K + + GY A+ +++VL++ GDNLTRENVMK Sbjct: 295 TDPQWKDDAGMKDFLAFMDKDFPEGNKLDNAVVVGYGVAQTLVEVLKKSGDNLTRENVMK 354 Query: 360 QAASLKNFHSDLMLPGVMVNTSPDDYFPIEQMQLMRFNGEAWELFGDVITGEVG 413 QAASLK+F ++++LPG+ +NTS D+ PI Q+QL RF GE WELFGDVI+ +VG Sbjct: 355 QAASLKDFRTEVLLPGIKINTSASDFAPISQLQLQRFKGEKWELFGDVISADVG 408 >ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU43242.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 409 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 250/387 (64%), Positives = 312/387 (80%), Gaps = 1/387 (0%) Query: 28 ATAATAQNKYDPGASDGEIKIGNIMPYSGPASSYGVIGKTEAAFFRMINDRGGINGRKIN 87 ++ A AQ KYDPG SD EIKIGNIMPYSGPAS+YGVIG+TEAA+F+MIND+GGINGRKIN Sbjct: 22 SSGALAQKKYDPGVSDTEIKIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRKIN 81 Query: 88 FISYDDAYSPPKAIEQVRKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQLFVASGGT 147 FISYDDAYS PK +EQ RKLVESDEVLLIF LGTP NSAI KYMN+KKVPQLFVA+G T Sbjct: 82 FISYDDAYSSPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATGAT 141 Query: 148 KFGDPKNFPWTMGFQPNYQSEGRIYAKYIRDKFPDSKIAVFWQNDDAGKDQFKGLKDGLG 207 K+ DPKNFPWTMG+QPNYQSE +IYAKYI + P++KIAV +QNDD GKD KGL+DGLG Sbjct: 142 KWNDPKNFPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGLEDGLG 201 Query: 208 DK-VGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVGELGWKPKF 266 K MI+ ++YE+S P+IDS IV L GAD+F + PK +AQAI+K+GE+GWKP Sbjct: 202 AKGASMIVIKEAYEISTPTIDSHIVKLKSIGADVFINITTPKFAAQAIKKMGEIGWKPTH 261 Query: 267 FLANTATSVASVLKPAGLEFSKGIISTAYLKDPTDPTWDKDPAVQSWRAFMDKYYPDGDK 326 FL N + SV SV+KPAG E ++G+IS AYLKD +D W D ++ + AFMDK +P+G+K Sbjct: 262 FLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDEQWKDDAGMKEFLAFMDKEFPEGNK 321 Query: 327 ANANNLYGYVQAEAMMQVLRQCGDNLTRENVMKQAASLKNFHSDLMLPGVMVNTSPDDYF 386 + + GY A+ +++VL++CGDNLTRENVMKQAASLK++ ++++LPG+ +NTS D+ Sbjct: 322 LDGGTVVGYGVAQTLVEVLKKCGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATDFA 381 Query: 387 PIEQMQLMRFNGEAWELFGDVITGEVG 413 P+ Q+QLMRF GE WELFGDVI+ +VG Sbjct: 382 PVSQLQLMRFKGEKWELFGDVISADVG 408 >ref|YP_001993217.1| branched-chain amino acid ABC transporter periplasmic protein [Rhodopseudomonas palustris TIE-1] gb|ACF02742.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris TIE-1] Length = 409 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 248/387 (64%), Positives = 312/387 (80%), Gaps = 1/387 (0%) Query: 28 ATAATAQNKYDPGASDGEIKIGNIMPYSGPASSYGVIGKTEAAFFRMINDRGGINGRKIN 87 + A AQ KYDPGASD EI+IGNIMPYSGPAS+YGVIG+TEAA+F+MIND+GGINGRKIN Sbjct: 22 SNGALAQKKYDPGASDTEIRIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGINGRKIN 81 Query: 88 FISYDDAYSPPKAIEQVRKLVESDEVLLIFQPLGTPSNSAIMKYMNAKKVPQLFVASGGT 147 FISYDDAYSPPK +EQ RKLVESDEVLLIF LGTP NSAI KYMN+KKVPQLFVA+G + Sbjct: 82 FISYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFVATGAS 141 Query: 148 KFGDPKNFPWTMGFQPNYQSEGRIYAKYIRDKFPDSKIAVFWQNDDAGKDQFKGLKDGLG 207 K+ DPKN+PWTMG+QPNYQSE +IYAKYI + P++KIAV +QNDD GKD KG +DGLG Sbjct: 142 KWNDPKNYPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGFEDGLG 201 Query: 208 DK-VGMIIADKSYEVSDPSIDSQIVALHDSGADIFFSWAAPKGSAQAIRKVGELGWKPKF 266 K MI+ +SYEVS+P+ID+ IV L +GAD+F + PK +AQAI+K+ E+GWKP Sbjct: 202 AKGQSMIVMKESYEVSEPTIDNHIVKLKSTGADVFINITTPKFAAQAIKKLAEVGWKPTH 261 Query: 267 FLANTATSVASVLKPAGLEFSKGIISTAYLKDPTDPTWDKDPAVQSWRAFMDKYYPDGDK 326 FL N + SV SV+KPAG E ++G+IS AYLKD +D W D ++ + AFMDK +P+G+K Sbjct: 262 FLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDDQWKDDAGMKQFLAFMDKEFPEGNK 321 Query: 327 ANANNLYGYVQAEAMMQVLRQCGDNLTRENVMKQAASLKNFHSDLMLPGVMVNTSPDDYF 386 + + GY A+ +++VL+ CGDNLTRENVMKQAASLK++ ++++LPG+ +NTS D+ Sbjct: 322 LDGGTIVGYGVAQTLVEVLKACGDNLTRENVMKQAASLKDYRTEVLLPGIKINTSATDFA 381 Query: 387 PIEQMQLMRFNGEAWELFGDVITGEVG 413 P+ Q+QLMRF GE WELFGDVI+ +VG Sbjct: 382 PVSQLQLMRFKGEKWELFGDVISADVG 408