BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0217.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771526.1| ABC transporter permease protein [Bradyrhizobiu...   169   1e-40
ref|YP_001206142.1| sugar ABC transporter permease [Bradyrhizobi...   168   2e-40
ref|YP_001240479.1| ABC transporter permease [Bradyrhizobium sp....   168   2e-40
ref|YP_004057002.1| monosaccharide ABC transporter membrane prot...    98   4e-19
ref|YP_002478534.1| Monosaccharide-transporting ATPase [Arthroba...    87   7e-16

>ref|NP_771526.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50151.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA
           110]
          Length = 342

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/86 (95%), Positives = 85/86 (98%)

Query: 1   VLTYTRFGRYVYMVGGNREAAEFAGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQN 60
           VLTYTRFGRYVYMVGGNREAAE++GLNVK ILG+VMVISAVCSGIGGMLGVAHFGSAQQN
Sbjct: 202 VLTYTRFGRYVYMVGGNREAAEYSGLNVKFILGAVMVISAVCSGIGGMLGVAHFGSAQQN 261

Query: 61  EFDTYLLDSIAAVVVGGTSLFGGRGG 86
           EFDTYLLDSIAAVVVGGTSLFGGRGG
Sbjct: 262 EFDTYLLDSIAAVVVGGTSLFGGRGG 287


>ref|YP_001206142.1| sugar ABC transporter permease [Bradyrhizobium sp. ORS 278]
 emb|CAL77917.1| Putative ABC transporter (permease protein); putative ribose
           transport system [Bradyrhizobium sp. ORS 278]
          Length = 345

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/84 (97%), Positives = 84/84 (100%)

Query: 3   TYTRFGRYVYMVGGNREAAEFAGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF 62
           TYTRFGRYVYMVGGNREAAE++GLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF
Sbjct: 207 TYTRFGRYVYMVGGNREAAEYSGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF 266

Query: 63  DTYLLDSIAAVVVGGTSLFGGRGG 86
           DTYLLDSIAAVVVGGTSLFGGRGG
Sbjct: 267 DTYLLDSIAAVVVGGTSLFGGRGG 290


>ref|YP_001240479.1| ABC transporter permease [Bradyrhizobium sp. BTAi1]
 gb|ABQ36573.1| monosaccharide ABC transporter membrane protein, CUT2 family
           [Bradyrhizobium sp. BTAi1]
          Length = 345

 Score =  168 bits (426), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/84 (97%), Positives = 84/84 (100%)

Query: 3   TYTRFGRYVYMVGGNREAAEFAGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF 62
           TYTRFGRYVYMVGGNREAAE++GLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF
Sbjct: 207 TYTRFGRYVYMVGGNREAAEYSGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQNEF 266

Query: 63  DTYLLDSIAAVVVGGTSLFGGRGG 86
           DTYLLDSIAAVVVGGTSLFGGRGG
Sbjct: 267 DTYLLDSIAAVVVGGTSLFGGRGG 290


>ref|YP_004057002.1| monosaccharide ABC transporter membrane protein, cut2 family
           [Oceanithermus profundus DSM 14977]
 gb|ADR35829.1| monosaccharide ABC transporter membrane protein, CUT2 family
           [Oceanithermus profundus DSM 14977]
          Length = 327

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/86 (56%), Positives = 64/86 (74%)

Query: 1   VLTYTRFGRYVYMVGGNREAAEFAGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQN 60
           VL YTRFGRYVYM G N +AAE AG+N + ++ +VMVI A+ +G+ G++G+   GSA   
Sbjct: 190 VLKYTRFGRYVYMTGANPKAAELAGVNTRGVVTAVMVIGALTAGLAGVVGIGRLGSATPT 249

Query: 61  EFDTYLLDSIAAVVVGGTSLFGGRGG 86
            FD  L+D+I AVV+GGTSLFGG GG
Sbjct: 250 AFDGMLIDAIGAVVLGGTSLFGGVGG 275


>ref|YP_002478534.1| Monosaccharide-transporting ATPase [Arthrobacter chlorophenolicus
           A6]
 gb|ACL42558.1| Monosaccharide-transporting ATPase [Arthrobacter chlorophenolicus
           A6]
          Length = 348

 Score = 87.0 bits (214), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 61/85 (71%)

Query: 1   VLTYTRFGRYVYMVGGNREAAEFAGLNVKLILGSVMVISAVCSGIGGMLGVAHFGSAQQN 60
           VL  TR+GR+VY VGGN EAA  AG+NVK +L SV VI+ VC+G+ G++  A   SAQ  
Sbjct: 199 VLERTRYGRHVYAVGGNAEAARLAGINVKRVLTSVYVIAGVCAGLAGVIFSARVVSAQPT 258

Query: 61  EFDTYLLDSIAAVVVGGTSLFGGRG 85
               Y LD+IAAVV+GGTSL GGRG
Sbjct: 259 AGGGYELDAIAAVVLGGTSLVGGRG 283