BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0216.p (161 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771526.1| ABC transporter permease protein [Bradyrhizobiu... 266 8e-70 ref|YP_001206142.1| sugar ABC transporter permease [Bradyrhizobi... 229 2e-58 ref|YP_001240479.1| ABC transporter permease [Bradyrhizobium sp.... 218 2e-55 ref|YP_429563.1| inner-membrane translocator [Moorella thermoace... 91 7e-17 ref|YP_004057002.1| monosaccharide ABC transporter membrane prot... 85 3e-15 >ref|NP_771526.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50151.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 342 Score = 266 bits (680), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 137/157 (87%), Positives = 149/157 (94%), Gaps = 2/157 (1%) Query: 1 MASSDGATARADHQRSRGLVPFLRSQMRNIAPFLTLIFLSAFFAIASPSFATIDNVGNIL 60 MASS+ TA A+ R+RGL PFLRSQMRNIAPFLTLIFLSAFFA+ASPSFAT+DN+GNIL Sbjct: 1 MASSE--TAFAEAHRARGLAPFLRSQMRNIAPFLTLIFLSAFFAVASPSFATLDNLGNIL 58 Query: 61 TQVSVTGIIAVGLTFVILCAEIDLSIASIANVTGIAVAYFTLQESYVNIANVPMPGIVAI 120 TQVSVTGIIAVGLTFVILCAEIDLSIASIANVTGIAVAYFTLQESYVNIAN+P+PG VAI Sbjct: 59 TQVSVTGIIAVGLTFVILCAEIDLSIASIANVTGIAVAYFTLQESYVNIANIPLPGAVAI 118 Query: 121 LLALALCALLGLVNALGLTMIGIPSFIMTLAMMQIAA 157 +L++ LCALLGLVNALGLT+IGIPSFIMTLAMMQIAA Sbjct: 119 ILSILLCALLGLVNALGLTVIGIPSFIMTLAMMQIAA 155 >ref|YP_001206142.1| sugar ABC transporter permease [Bradyrhizobium sp. ORS 278] emb|CAL77917.1| Putative ABC transporter (permease protein); putative ribose transport system [Bradyrhizobium sp. ORS 278] Length = 345 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 129/148 (87%), Positives = 139/148 (93%) Query: 10 RADHQRSRGLVPFLRSQMRNIAPFLTLIFLSAFFAIASPSFATIDNVGNILTQVSVTGII 69 A +R+ G+ LRSQMRNIAPFLTLIFL+AFFAIASPSFAT+DNVGNILTQVSVTGII Sbjct: 11 EAQARRAGGIASLLRSQMRNIAPFLTLIFLTAFFAIASPSFATLDNVGNILTQVSVTGII 70 Query: 70 AVGLTFVILCAEIDLSIASIANVTGIAVAYFTLQESYVNIANVPMPGIVAILLALALCAL 129 AVGLTFVILCAEIDLSIA+IANVTGIAVAYFTLQESYVNIANVP+PG+ AILLALALCAL Sbjct: 71 AVGLTFVILCAEIDLSIAAIANVTGIAVAYFTLQESYVNIANVPLPGVAAILLALALCAL 130 Query: 130 LGLVNALGLTMIGIPSFIMTLAMMQIAA 157 LG+VNA GLT+IGIPSFIMTLAMMQIAA Sbjct: 131 LGVVNAFGLTVIGIPSFIMTLAMMQIAA 158 >ref|YP_001240479.1| ABC transporter permease [Bradyrhizobium sp. BTAi1] gb|ABQ36573.1| monosaccharide ABC transporter membrane protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 345 Score = 218 bits (555), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 125/148 (84%), Positives = 137/148 (92%) Query: 10 RADHQRSRGLVPFLRSQMRNIAPFLTLIFLSAFFAIASPSFATIDNVGNILTQVSVTGII 69 A +R+ GL LR+QMRNIAPFLTLIFL+AFFAIASPSFAT+DNVGNILTQVSVTGII Sbjct: 11 EAQPRRAGGLATLLRTQMRNIAPFLTLIFLTAFFAIASPSFATLDNVGNILTQVSVTGII 70 Query: 70 AVGLTFVILCAEIDLSIASIANVTGIAVAYFTLQESYVNIANVPMPGIVAILLALALCAL 129 AVGLTFVILCAEIDLSIA+IANVTGIAVA+FTLQ+SYVNIAN+P+PG AI+LALALCAL Sbjct: 71 AVGLTFVILCAEIDLSIAAIANVTGIAVAFFTLQDSYVNIANLPLPGFAAIMLALALCAL 130 Query: 130 LGLVNALGLTMIGIPSFIMTLAMMQIAA 157 LG VNA GLT+IGIPSFIMTLAMMQIAA Sbjct: 131 LGAVNAFGLTVIGIPSFIMTLAMMQIAA 158 >ref|YP_429563.1| inner-membrane translocator [Moorella thermoacetica ATCC 39073] gb|ABC19020.1| monosaccharide ABC transporter membrane protein, CUT2 family [Moorella thermoacetica ATCC 39073] Length = 330 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 81/135 (60%), Gaps = 8/135 (5%) Query: 23 LRSQMRNIAPFLTLIFLSAFFAIASPSFATIDNVGNILTQVSVTGIIAVGLTFVILCAEI 82 L+ + ++AP TLI L FF++AS +F I N NIL QVS I++ G+TFV+L EI Sbjct: 16 LKRSLHSMAPLWTLIILFIFFSLASDTFFRIINFRNILIQVSTMAIMSTGVTFVLLTGEI 75 Query: 83 DLSIASIANVTGIAVAYFTLQESYVNIANVPMPGIVAILLALALCALLGLVNALGLTMIG 142 DLS+A + + G+ A A + +P ++I+LAL + LLG N G +G Sbjct: 76 DLSVADVGGLAGVIAA--------YATATLALPQSLSIILALVITLLLGYFNGFGTARLG 127 Query: 143 IPSFIMTLAMMQIAA 157 IPSF++TLAMM IA Sbjct: 128 IPSFMITLAMMVIAG 142 >ref|YP_004057002.1| monosaccharide ABC transporter membrane protein, cut2 family [Oceanithermus profundus DSM 14977] gb|ADR35829.1| monosaccharide ABC transporter membrane protein, CUT2 family [Oceanithermus profundus DSM 14977] Length = 327 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 9/133 (6%) Query: 25 SQMRNIAPFLTLIFLSAFFAIASPSFATIDNVGNILTQVSVTGIIAVGLTFVILCAEIDL 84 ++ R AP TL+ L FF++ S SF T++N NIL QV++ I+ G+TFV+L A+IDL Sbjct: 20 AKSREFAPVWTLLALILFFSVYSDSFLTLENAANILNQVALLAIMGTGITFVLLTAQIDL 79 Query: 85 SIASIANVTGIAVAYFTLQESYVNIANVPMPGIVAILLALALCALLGLVNALGLTMIGIP 144 S++ +A G+ AY+T ++P P I+ AL LG +N +G +GIP Sbjct: 80 SVSYMATFAGVVAAYYT-------AGHLPQP--WPIVAALLAAGALGWINGVGTARLGIP 130 Query: 145 SFIMTLAMMQIAA 157 SF++TLAM IA+ Sbjct: 131 SFMVTLAMSLIAS 143