BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0214.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771524.1| ABC transporter substrate-binding protein [Brad... 625 e-177 ref|YP_001240477.1| ABC transporter substrate-binding protein [B... 618 e-175 ref|YP_001206140.1| sugar ABC transporter substrate-binding prot... 615 e-174 ref|YP_004057004.1| monosaccharide ABC transporter substrate-bin... 384 e-104 ref|YP_429561.1| ABC transporter substrate-binding protein [Moor... 338 5e-91 >ref|NP_771524.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC50149.1| ABC transporter substrate-binding protein [Bradyrhizobium japonicum USDA 110] Length = 352 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 311/339 (91%), Positives = 321/339 (94%), Gaps = 1/339 (0%) Query: 7 GMDKASTTRRDLLQMAAAGGAAAGLFGGMGMTTSALAAEMGRSEKPLKAAFSNAGLQATW 66 G STTRRDLLQ AA GAA + G MG+ ALAAE+GRSEKPLKAAFSNAGLQATW Sbjct: 15 GTKDFSTTRRDLLQAAATAGAATAILGSMGIN-PALAAEVGRSEKPLKAAFSNAGLQATW 73 Query: 67 CAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIGTLTQPV 126 CAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIGTLTQPV Sbjct: 74 CAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIGTLTQPV 133 Query: 127 QKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAIGGKGKVIMTQGA 186 QKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNA+GGKGK+IMTQGA Sbjct: 134 QKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAMGGKGKIIMTQGA 193 Query: 187 LGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKTARLWETYLTKYSQIDAAFFHND 246 LGHTGAQGRAKGFN+V+KQFP IEVLDTQPADWDVSKTARLWETYLTKY QIDAAFFHND Sbjct: 194 LGHTGAQGRAKGFNNVVKQFPGIEVLDTQPADWDVSKTARLWETYLTKYPQIDAAFFHND 253 Query: 247 DMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAIVAGVAA 306 DMALAA NIMKAR RTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAI+AGV+A Sbjct: 254 DMALAAANIMKARGRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAIIAGVSA 313 Query: 307 VVGGEKSGQGIPKNVVTDGPVVTKANAAGMQWMEDHFLI 345 VVGGEKSGQGIPKNVVTDGPVVTKANAAGMQWM+DHFLI Sbjct: 314 VVGGEKSGQGIPKNVVTDGPVVTKANAAGMQWMQDHFLI 352 >ref|YP_001240477.1| ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36571.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Bradyrhizobium sp. BTAi1] Length = 344 Score = 618 bits (1593), Expect = e-175, Method: Compositional matrix adjust. Identities = 312/345 (90%), Positives = 320/345 (92%), Gaps = 1/345 (0%) Query: 1 MPGTDKGMDKASTTRRDLLQMAAAGGAAAGLFGGMGMTTSALAAEMGRSEKPLKAAFSNA 60 M GTDK TRRDLLQ A A G+AA L G G+ ALAAEMGRSEKPLKAAFSNA Sbjct: 1 MSGTDKTSKTTVKTRRDLLQAATAAGSAAALLAGFGIN-PALAAEMGRSEKPLKAAFSNA 59 Query: 61 GLQATWCAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG 120 GLQATWCAQGKQAAE+WGKL NVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG Sbjct: 60 GLQATWCAQGKQAAEWWGKLLNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG 119 Query: 121 TLTQPVQKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAIGGKGKV 180 TLTQPVQKMIDAG PVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQAL NA+GGKGK+ Sbjct: 120 TLTQPVQKMIDAGIPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALANAMGGKGKI 179 Query: 181 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKTARLWETYLTKYSQIDA 240 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSK ARLWETYLTKY QIDA Sbjct: 180 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKAARLWETYLTKYPQIDA 239 Query: 241 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAI 300 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVS+GRMFATVRNPSCRIHGGAI Sbjct: 240 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSDGRMFATVRNPSCRIHGGAI 299 Query: 301 VAGVAAVVGGEKSGQGIPKNVVTDGPVVTKANAAGMQWMEDHFLI 345 VAGVAAV GEKSGQGIPK+V+TDGPVVTKANAAGMQWMEDHFLI Sbjct: 300 VAGVAAVTAGEKSGQGIPKHVITDGPVVTKANAAGMQWMEDHFLI 344 >ref|YP_001206140.1| sugar ABC transporter substrate-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77915.1| Putative ABC transporter (substrate-binding protein); putative ribose transport system [Bradyrhizobium sp. ORS 278] Length = 344 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 310/345 (89%), Positives = 319/345 (92%), Gaps = 1/345 (0%) Query: 1 MPGTDKGMDKASTTRRDLLQMAAAGGAAAGLFGGMGMTTSALAAEMGRSEKPLKAAFSNA 60 M GTD+ +K RRD+LQ A A G+AA L G G+ ALAAEMGRSEKPLKAAFSNA Sbjct: 1 MSGTDETSNKTFKNRRDILQAATAAGSAAALLAGFGIN-PALAAEMGRSEKPLKAAFSNA 59 Query: 61 GLQATWCAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG 120 GLQATWCAQGKQAAE+WGKL NVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG Sbjct: 60 GLQATWCAQGKQAAEWWGKLLNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIG 119 Query: 121 TLTQPVQKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAIGGKGKV 180 TLTQPVQKMIDAG PVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQAL NA+GGKGK+ Sbjct: 120 TLTQPVQKMIDAGIPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALANAMGGKGKI 179 Query: 181 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKTARLWETYLTKYSQIDA 240 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSK ARLWETYLTKY QIDA Sbjct: 180 IMTQGALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKAARLWETYLTKYPQIDA 239 Query: 241 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAI 300 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAI Sbjct: 240 AFFHNDDMALAAYNIMKARNRTNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAI 299 Query: 301 VAGVAAVVGGEKSGQGIPKNVVTDGPVVTKANAAGMQWMEDHFLI 345 VAGVAAV GEKSGQGIPK V+TDGPVVTKANA GMQWMEDHFLI Sbjct: 300 VAGVAAVTAGEKSGQGIPKQVITDGPVVTKANAPGMQWMEDHFLI 344 >ref|YP_004057004.1| monosaccharide ABC transporter substrate-binding protein, cut2 family [Oceanithermus profundus DSM 14977] gb|ADR35831.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Oceanithermus profundus DSM 14977] Length = 352 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/355 (53%), Positives = 249/355 (70%), Gaps = 22/355 (6%) Query: 8 MDKASTTRRDLLQMAAAGGAAAGLFGGMGMTTSALAAEMGRSEKPLKAAFSNAGLQATWC 67 M K +RR + +A A+ G+ G + AAE G++ +PLKAAFSNAGLQATWC Sbjct: 1 MGKPDLSRRKFMIQSAL--ASMGIVAGPAFLQTVRAAE-GKN-RPLKAAFSNAGLQATWC 56 Query: 68 AQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIGTLTQPVQ 127 AQGK E WG+ VE+ W+DGQLD KQRAA+D MA++ WDFVAIQ+ IG+L +PVQ Sbjct: 57 AQGKDTVEQWGEWLGVEIHWYDGQLDVAKQRAAVDAMAAKDWDFVAIQSLSIGSLVEPVQ 116 Query: 128 KMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAIGGKGKVIMTQGAL 187 KMID G PVI MDT++AP +I H+F+APDN +M VTQAL +AIGGKG ++MTQG+L Sbjct: 117 KMIDKGIPVIAMDTMLAPWGKIKQHTFIAPDNVWMAEQVTQALVDAIGGKGNIVMTQGSL 176 Query: 188 GHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKTARLWETYLTKYSQIDAAFFHNDD 247 GHTGAQGRA+GF +V+K++P+I+V+D PADWDV+K A+LWE L +Y +IDAAFFHNDD Sbjct: 177 GHTGAQGRAQGFYNVVKRYPDIKVIDESPADWDVAKVAQLWENLLNRYKKIDAAFFHNDD 236 Query: 248 MALAAYNIMKARNRTN-ILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAIVAGVAA 306 MALAAY+++K R N I++GG+D MPPA+QAV +G++ AT RN S RIH GA+VAG A Sbjct: 237 MALAAYHVIKNAGRENEIVLGGIDGMPPAVQAVLDGKLHATARNSSARIHWGALVAGYYA 296 Query: 307 VVGGEKSGQGIPKNVVTDGPVVTKAN-----------------AAGMQWMEDHFL 344 + E+ G+ IP+ ++ DGP + + G+ W E HFL Sbjct: 297 AMLKEQPGKDIPEFILADGPAILPPSKEKTDKPWLLKGYGIGAGPGLLWQEKHFL 351 >ref|YP_429561.1| ABC transporter substrate-binding protein [Moorella thermoacetica ATCC 39073] gb|ABC19018.1| monosaccharide ABC transporter substrate-binding protein, CUT2 family [Moorella thermoacetica ATCC 39073] Length = 358 Score = 338 bits (868), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 174/359 (48%), Positives = 239/359 (66%), Gaps = 23/359 (6%) Query: 5 DKGMDKASTTRRDLLQMAAAGGAAAGLFGGMGMTTSALAAEMGRSEKPLKAAFSNAGLQA 64 +KGM++ + L+ A G AG + +S + K LKAAFSNAGLQA Sbjct: 5 EKGMNRREFIVKSLM----ASGLVAGSSLLLSGCSSGSTGTTAKEGKRLKAAFSNAGLQA 60 Query: 65 TWCAQGKQAAEFWGKLFNVEVTWFDGQLDAVKQRAAIDNMASQKWDFVAIQAFGIGTLTQ 124 TWCAQGK E WGK V++TW+DG L KQRAA+++MA++ WDFVAIQ GIGTL + Sbjct: 61 TWCAQGKDTVERWGKWLGVDITWYDGALSVDKQRAAVEDMATKDWDFVAIQPLGIGTLNE 120 Query: 125 PVQKMIDAGTPVIDMDTLIAPLDQINVHSFLAPDNEFMGASVTQALCNAIGGKGKVIMTQ 184 PV+KM++ G PVIDMDT+IA ++ + F+APDN + VT+AL AIGGKG V+MTQ Sbjct: 121 PVKKMLERGIPVIDMDTMIAQPGELPITCFIAPDNVWGAEQVTEALMQAIGGKGNVVMTQ 180 Query: 185 GALGHTGAQGRAKGFNSVIKQFPNIEVLDTQPADWDVSKTARLWETYLTKYSQIDAAFFH 244 G+LGHTGAQGRA+GF++VIK++P+++V+D PAD+DV+K A++WE L +Y +IDAA+FH Sbjct: 181 GSLGHTGAQGRAQGFHNVIKRYPDVKVIDETPADFDVNKVAQIWENLLNRYDKIDAAYFH 240 Query: 245 NDDMALAAYNIMKARNR-TNILIGGVDAMPPAIQAVSEGRMFATVRNPSCRIHGGAIVAG 303 NDDMALAAY ++K R I IGG D M PA++AV +G M AT RN + RIH GA++ G Sbjct: 241 NDDMALAAYQVIKNAGREKEIKIGGNDGMQPAVEAVQKGIMVATARNSAPRIHWGALMIG 300 Query: 304 VAAVVGGEKSGQGIPKNVVTDGPVVT-----------------KANAAGMQWMEDHFLI 345 A + + + IP ++ DGP++T ++ A G+ W EDHF++ Sbjct: 301 YYAATEKD-ANKKIPPFILADGPIITYNVDQSNKQPWLNKGYGQSLAPGLIWQEDHFMV 358