BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0212.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771522.1| hypothetical protein bll4882 [Bradyrhizobium ja...    91   5e-17
ref|YP_578903.1| hypothetical protein Nham_3717 [Nitrobacter ham...    91   6e-17
ref|ZP_01045760.1| hypothetical protein NB311A_01464 [Nitrobacte...    87   9e-16
ref|ZP_01046639.1| hypothetical protein NB311A_18461 [Nitrobacte...    86   2e-15
ref|YP_001206138.1| putative signal peptide [Bradyrhizobium sp. ...    82   3e-14

>ref|NP_771522.1| hypothetical protein bll4882 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50147.1| bll4882 [Bradyrhizobium japonicum USDA 110]
          Length = 128

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 5/123 (4%)

Query: 1   MRRRLKNFLPIVLVALLVQILAPIGACWAANLAASDPLAAATICHGDAGSRAGQGDQT-S 59
           MR RL+ FLP+VL+AL +Q+LAPI ACWAA  A +DPL+AA ICH  A  + G  DQT +
Sbjct: 5   MRARLQKFLPLVLLALAMQVLAPIAACWAAGQAVADPLSAAVICH-SANEQGGLNDQTGT 63

Query: 60  HDAHDGCCSACSVLQTGAPVDSPQVAAQAV-VRLPSRIAW-LDFASEFDRSRAGLSAQAR 117
             AH   C+ C + Q  A +DSP   A A+  R    +AW +  AS     + G SAQAR
Sbjct: 64  PTAHGAACALCCLAQANASLDSPPEVALAIPFRHAECVAWHVADASAVSVHKDG-SAQAR 122

Query: 118 APP 120
           APP
Sbjct: 123 APP 125


>ref|YP_578903.1| hypothetical protein Nham_3717 [Nitrobacter hamburgensis X14]
 gb|ABE64443.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 123

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 62/123 (50%)

Query: 1   MRRRLKNFLPIVLVALLVQILAPIGACWAANLAASDPLAAATICHGDAGSRAGQGDQTSH 60
           MRRRL  FLPIV+ A+LVQI API AC A N  A+DPLA A   H    +     +    
Sbjct: 1   MRRRLGQFLPIVMFAMLVQIFAPIAACLAFNTTAADPLANAICSHATEANSPQDREIDPQ 60

Query: 61  DAHDGCCSACSVLQTGAPVDSPQVAAQAVVRLPSRIAWLDFASEFDRSRAGLSAQARAPP 120
             H  CC+ C V+    P   PQ  A ++ R  + + W D          G +AQAR PP
Sbjct: 61  QTHGTCCTLCCVVHAATPTADPQAFAISIERDATAVIWRDLPFGLPPFAVGSNAQARGPP 120

Query: 121 LSS 123
            +S
Sbjct: 121 ATS 123


>ref|ZP_01045760.1| hypothetical protein NB311A_01464 [Nitrobacter sp. Nb-311A]
 gb|EAQ36131.1| hypothetical protein NB311A_01464 [Nitrobacter sp. Nb-311A]
          Length = 123

 Score = 87.0 bits (214), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 66/124 (53%), Gaps = 2/124 (1%)

Query: 1   MRRRLKNFLPIVLVALLVQILAPIGACWAANLAASDPLAAATICHGDAGSRAGQGDQTS- 59
           MRRRL  FLPIV++A+LVQI API AC A +   +DPLA A IC     +R+ Q  +T  
Sbjct: 1   MRRRLGRFLPIVMLAMLVQIFAPIAACLAFSTTTADPLAGA-ICSHAPDARSPQDRETDP 59

Query: 60  HDAHDGCCSACSVLQTGAPVDSPQVAAQAVVRLPSRIAWLDFASEFDRSRAGLSAQARAP 119
              H  CC+ C V+    P   PQ  A ++ R  + + W   A          +AQARAP
Sbjct: 60  QQTHGACCALCCVIHAATPPPDPQAVAVSIARDATAVVWRGVAFGLSPFSVDSNAQARAP 119

Query: 120 PLSS 123
           P  S
Sbjct: 120 PFMS 123


>ref|ZP_01046639.1| hypothetical protein NB311A_18461 [Nitrobacter sp. Nb-311A]
 gb|EAQ35475.1| hypothetical protein NB311A_18461 [Nitrobacter sp. Nb-311A]
          Length = 123

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 58/120 (48%)

Query: 1   MRRRLKNFLPIVLVALLVQILAPIGACWAANLAASDPLAAATICHGDAGSRAGQGDQTSH 60
           MRRRL  FLPIV++A+LVQI API AC A +   +DPLA A   H    S     +    
Sbjct: 1   MRRRLGRFLPIVMLAMLVQIFAPIAACLAFSTTPADPLAGAICSHAPDASSPQHRETDPQ 60

Query: 61  DAHDGCCSACSVLQTGAPVDSPQVAAQAVVRLPSRIAWLDFASEFDRSRAGLSAQARAPP 120
             H  CC  C V+    P   P   A ++ R P+ + W   A           AQARAPP
Sbjct: 61  QTHRACCVLCCVVHAATPPPDPLAVAVSIARDPTNVVWRGLAFGLPPFAIDSHAQARAPP 120


>ref|YP_001206138.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL77913.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 128

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)

Query: 1   MRRRLKNFLPIVLVALLVQILAPIGACWAANLAASDPLAAATICHGDAGSRAGQGDQTSH 60
           MR++L+ F+PIVL+AL+VQILAPIG   AA  AA+DP  +  ICH  +GS     D  + 
Sbjct: 8   MRQQLQAFIPIVLIALMVQILAPIGIARAAAAAAADPFRSLEICHSQSGSEPSDDDSRAK 67

Query: 61  DAHDGCCSACSVLQTGAPVDSPQVAAQAVVRLPSR-IAWLDFASEFDRSRAGLSAQARAP 119
               G C+ C + Q  A +D P++ A AV R  +R + W  + S+   +RA  +AQARAP
Sbjct: 68  -LDQGVCALCCLAQPMA-LDGPELTADAVPRRDARDLVWRAYISDVRGNRASSNAQARAP 125

Query: 120 PLS 122
           P S
Sbjct: 126 PAS 128