BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0196.p (309 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japo... 460 e-127 ref|YP_001240164.1| putative membrane carboxypeptidase/penicilli... 456 e-126 ref|YP_001205521.1| putative membrane carboxypeptidase/penicilli... 455 e-126 ref|YP_577098.1| penicillin-binding protein 1A [Nitrobacter hamb... 455 e-126 ref|ZP_01046440.1| Penicillin-binding protein 1A [Nitrobacter sp... 450 e-124 >ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49572.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust. Identities = 228/309 (73%), Positives = 247/309 (79%), Gaps = 24/309 (7%) Query: 1 VTVRLAQEIGMPLIGEYAKRFGVYDELPNYLAYALGAGETTVMRMATAYSMIANGGVRVK 60 VTVRLAQ+IGMPLIGEYA+RFGVYDELPNYL+YALGAGETT MRM TAYSM+ANGG RVK Sbjct: 551 VTVRLAQDIGMPLIGEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMLANGGRRVK 610 Query: 61 PTLIDRIQDRYGHTIFKHDQRECRGCDAPEGWKNQPEPQLVDRRERVLDAMSAYQITSLM 120 PTLIDRIQDRYG TIFKHDQRECRGCDAP GWKNQ EPQL+DRRE+VLD+M+AYQIT LM Sbjct: 611 PTLIDRIQDRYGRTIFKHDQRECRGCDAPGGWKNQNEPQLIDRREQVLDSMTAYQITELM 670 Query: 121 EGVIQAGTGTALKEVGKPLAGKTGTTNDEKDVWFVGFSPDLAVGVYMGYDKPRNLGRAAT 180 EGV+QAGT T +KEVGKP+AGKTGTTN+ KD WFVGFSPD+AV +YMGYDKPR LG+ Sbjct: 671 EGVVQAGTATVVKEVGKPIAGKTGTTNEAKDAWFVGFSPDVAVAIYMGYDKPRALGK--- 727 Query: 181 GXLVVGLYVGYDKPRSLGRNAQAGHTAAPIARDFLKLALADKTATPFKQPVGIRLVLVDA 240 G A GH AAPIARDFLKLALADK A PFK P GI+LV V A Sbjct: 728 -----------------GNAATGGHLAAPIARDFLKLALADKPAVPFKVPAGIKLVRVVA 770 Query: 241 KTGQRAPPGQNRGVVLEAFKPGTAPPENYSVIGVADDDGRSPAPGPQPSQNGAQPDGGFF 300 KTG RA PG+ G +LEAFKPGTAPP+NYSVIGVAD DGR P Q QPD GFF Sbjct: 771 KTGMRAGPGETGGTILEAFKPGTAPPDNYSVIGVADADGRGGVPASQQQ----QPDSGFF 826 Query: 301 MRPGTGGLY 309 MRPGTGGLY Sbjct: 827 MRPGTGGLY 835 >ref|YP_001240164.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36258.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] Length = 835 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/310 (73%), Positives = 248/310 (80%), Gaps = 26/310 (8%) Query: 1 VTVRLAQEIGMPLIGEYAKRFGVYDELPNYLAYALGAGETTVMRMATAYSMIANGGVRVK 60 VTVRLAQ++GMPLI EYA+RFGVYDELPNYL+YALGAGETT MRM TAYSMIANGG RVK Sbjct: 551 VTVRLAQDVGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMIANGGRRVK 610 Query: 61 PTLIDRIQDRYGHTIFKHDQRECRGCDAPEGWKNQPEPQLVDRRERVLDAMSAYQITSLM 120 PTLIDRIQDRYGHTIFKHD RECRGCDAPEGWKNQ EPQLVDRRE+VLD M+AYQITS++ Sbjct: 611 PTLIDRIQDRYGHTIFKHDARECRGCDAPEGWKNQTEPQLVDRREQVLDTMTAYQITSML 670 Query: 121 EGVIQAGTGTALKEVGKPLAGKTGTTNDEKDVWFVGFSPDLAVGVYMGYDKPRNLGRAAT 180 EGV+QAGT T LKEVGKP+AGKTGTTN+ KD WFVGFSPDLAV +YMGYDKPR LG+ Sbjct: 671 EGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMGYDKPRPLGK--- 727 Query: 181 GXLVVGLYVGYDKPRSLGRNAQAGHTAAPIARDFLKLALADKTATPFKQPVGIRLVLVDA 240 G A GH AAPIA+DF+KLALADK ATPFK P GI+LV VDA Sbjct: 728 -----------------GNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDA 770 Query: 241 KTGQRAPPGQNRGVVLEAFKPGTAPPENYSVIGVADDDGRSPAPGPQPSQNGAQPDGG-F 299 KTG RA PG ++EAFKPGTAPP+NYSVIGVAD DGR PSQ+G QPD G F Sbjct: 771 KTGLRAGPGDTGRTIMEAFKPGTAPPDNYSVIGVADADGRM-----MPSQSGGQPDAGSF 825 Query: 300 FMRPGTGGLY 309 +RPGTG LY Sbjct: 826 IIRPGTGSLY 835 >ref|YP_001205521.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77295.1| putative membrane carboxypeptidase/penicillin-binding protein; putative exported protein [Bradyrhizobium sp. ORS 278] Length = 837 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 226/310 (72%), Positives = 248/310 (80%), Gaps = 26/310 (8%) Query: 1 VTVRLAQEIGMPLIGEYAKRFGVYDELPNYLAYALGAGETTVMRMATAYSMIANGGVRVK 60 VTVRLAQ++GMPLI EYA+RFGVYDELPNYL+YALGAGETT MRM TAYSMIANGG RVK Sbjct: 553 VTVRLAQDVGMPLISEYARRFGVYDELPNYLSYALGAGETTAMRMVTAYSMIANGGRRVK 612 Query: 61 PTLIDRIQDRYGHTIFKHDQRECRGCDAPEGWKNQPEPQLVDRRERVLDAMSAYQITSLM 120 PTLIDRIQDRYGHTIFKHD RECRGCDAP+GWKNQ EPQLVDRRE+VLD M+AYQITS++ Sbjct: 613 PTLIDRIQDRYGHTIFKHDARECRGCDAPDGWKNQSEPQLVDRREQVLDTMTAYQITSML 672 Query: 121 EGVIQAGTGTALKEVGKPLAGKTGTTNDEKDVWFVGFSPDLAVGVYMGYDKPRNLGRAAT 180 EGV+QAGT T LKEVGKP+AGKTGTTN+ KD WFVGFSPDLAV +YMGYDKPR LG+ Sbjct: 673 EGVVQAGTATVLKEVGKPIAGKTGTTNEAKDAWFVGFSPDLAVAIYMGYDKPRPLGK--- 729 Query: 181 GXLVVGLYVGYDKPRSLGRNAQAGHTAAPIARDFLKLALADKTATPFKQPVGIRLVLVDA 240 G A GH AAPIA+DF+KLALADK ATPFK P GI+LV VDA Sbjct: 730 -----------------GNAATGGHLAAPIAKDFMKLALADKPATPFKIPAGIKLVRVDA 772 Query: 241 KTGQRAPPGQNRGVVLEAFKPGTAPPENYSVIGVADDDGRSPAPGPQPSQNGAQPDGG-F 299 KTG RA PG + ++EAFKPGTAPP+NYSVIGVAD DGR P QNG QPD G F Sbjct: 773 KTGMRAGPGDSGRTIMEAFKPGTAPPDNYSVIGVADADGRM-----MPPQNGGQPDSGNF 827 Query: 300 FMRPGTGGLY 309 +RPGTG LY Sbjct: 828 IIRPGTGSLY 837 >ref|YP_577098.1| penicillin-binding protein 1A [Nitrobacter hamburgensis X14] gb|ABE62638.1| Penicillin-binding protein 1A [Nitrobacter hamburgensis X14] Length = 843 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 221/309 (71%), Positives = 247/309 (79%), Gaps = 30/309 (9%) Query: 1 VTVRLAQEIGMPLIGEYAKRFGVYDELPNYLAYALGAGETTVMRMATAYSMIANGGVRVK 60 VTVRLAQ+IGMPLIGEYAKRFG+YDELPNYL+YALGAGETTV+RM TAYSM NGG RVK Sbjct: 565 VTVRLAQDIGMPLIGEYAKRFGIYDELPNYLSYALGAGETTVLRMVTAYSMFDNGGRRVK 624 Query: 61 PTLIDRIQDRYGHTIFKHDQRECRGCDAPEGWKNQPEPQLVDRRERVLDAMSAYQITSLM 120 PTLIDRIQDRYGHTI+KHD RECRGCDAPEGWKNQPEPQL+D RE+VLD+M+AYQITS+M Sbjct: 625 PTLIDRIQDRYGHTIYKHDTRECRGCDAPEGWKNQPEPQLIDHREQVLDSMTAYQITSMM 684 Query: 121 EGVIQAGTGTALKEVGKPLAGKTGTTNDEKDVWFVGFSPDLAVGVYMGYDKPRNLGRAAT 180 EGV+QAGT T +++VGKP+AGKTGTTND+KD WF+GFSPDL VGVY+GYDKPRNLGR AT Sbjct: 685 EGVVQAGTATVMRDVGKPIAGKTGTTNDQKDAWFIGFSPDLVVGVYIGYDKPRNLGRTAT 744 Query: 181 GXLVVGLYVGYDKPRSLGRNAQAGHTAAPIARDFLKLALADKTATPFKQPVGIRLVLVDA 240 G GH AAPIARDF+K+ALADK ATPF+ P GI+LV VDA Sbjct: 745 G----------------------GHLAAPIARDFMKVALADKPATPFRIPAGIKLVRVDA 782 Query: 241 KTGQRAPPGQNRGVVLEAFKPGTAPPENYSVIGVADDDGRSPAPGPQPSQNGAQPDGGFF 300 KTG RA PG +LEAFKPGTAPP+NYSVIGVAD DGR P P P ++ Sbjct: 783 KTGMRAGPGDTGKTILEAFKPGTAPPDNYSVIGVADADGRQPQPLPDADRS--------L 834 Query: 301 MRPGTGGLY 309 RPGTGGLY Sbjct: 835 FRPGTGGLY 843 >ref|ZP_01046440.1| Penicillin-binding protein 1A [Nitrobacter sp. Nb-311A] gb|EAQ35530.1| Penicillin-binding protein 1A [Nitrobacter sp. Nb-311A] Length = 829 Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/309 (71%), Positives = 248/309 (80%), Gaps = 31/309 (10%) Query: 1 VTVRLAQEIGMPLIGEYAKRFGVYDELPNYLAYALGAGETTVMRMATAYSMIANGGVRVK 60 VTVRLAQ+IGMPLIGEYAKRFGVYDELPNYL+YALGAGETTV+RM TAYSM NGG RVK Sbjct: 552 VTVRLAQDIGMPLIGEYAKRFGVYDELPNYLSYALGAGETTVLRMVTAYSMFDNGGRRVK 611 Query: 61 PTLIDRIQDRYGHTIFKHDQRECRGCDAPEGWKNQPEPQLVDRRERVLDAMSAYQITSLM 120 PTLIDRIQDRYGHTI+KHD RECRGCDAP+GWKNQPEPQL+D RE+VLD+M+AYQITS+M Sbjct: 612 PTLIDRIQDRYGHTIYKHDARECRGCDAPQGWKNQPEPQLIDHREQVLDSMTAYQITSMM 671 Query: 121 EGVIQAGTGTALKEVGKPLAGKTGTTNDEKDVWFVGFSPDLAVGVYMGYDKPRNLGRAAT 180 EGV+QAGT T +++VGKP+AGKTGTTND+KD WF+GFSPDL VG+Y+GYDKPRNLGR AT Sbjct: 672 EGVVQAGTATVMRDVGKPIAGKTGTTNDQKDAWFIGFSPDLVVGIYVGYDKPRNLGRRAT 731 Query: 181 GXLVVGLYVGYDKPRSLGRNAQAGHTAAPIARDFLKLALADKTATPFKQPVGIRLVLVDA 240 G GH AAPIARDF+K+ALADK ATPF+ P GI+LV VDA Sbjct: 732 G----------------------GHLAAPIARDFMKVALADKPATPFRIPAGIKLVRVDA 769 Query: 241 KTGQRAPPGQNRGVVLEAFKPGTAPPENYSVIGVADDDGRSPAPGPQPSQNGAQPDGGFF 300 KTG RA PG + +LEAFKPGTAPP+NYSVIGVAD DGR P P P ++ Sbjct: 770 KTGMRAGPGSGK-TILEAFKPGTAPPDNYSVIGVADADGREPQPLPDADRS--------L 820 Query: 301 MRPGTGGLY 309 RPGTGGLY Sbjct: 821 FRPGTGGLY 829