BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0194.p (356 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240164.1| putative membrane carboxypeptidase/penicilli... 346 3e-93 ref|YP_001205521.1| putative membrane carboxypeptidase/penicilli... 343 3e-92 ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japo... 340 2e-91 ref|ZP_08630068.1| multimodular transpeptidase-transglycosylase ... 340 2e-91 ref|YP_318329.1| penicillin-binding protein 1A [Nitrobacter wino... 340 3e-91 >ref|YP_001240164.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36258.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] Length = 835 Score = 346 bits (888), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 169/207 (81%), Positives = 189/207 (91%), Gaps = 7/207 (3%) Query: 1 VKSLSDISPWRMAVVLESNDQSARIGFQPGRELGGAISKQRETGIITMDGVRWAKS---- 56 +KSLSDISPWRMAVVLE++DQSARIGFQP RELGGA+SK+R+TG+IT+DGVRWA++ Sbjct: 345 IKSLSDISPWRMAVVLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVRWARAATGN 404 Query: 57 -KGKTPTSVAQVLQPGDVIYADPLFSKDGQRVEGQYRLRQIPELSGAMVAMDPHTGRVLA 115 +GKTPTSVAQVLQPGDVIYADPLF K+G VEGQYRL Q+PE+SGAMVAMDP+TGRVLA Sbjct: 405 GRGKTPTSVAQVLQPGDVIYADPLF-KEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLA 463 Query: 116 MVGGFSFDQSQFNRATQAYRQPGSTFKPIVYSSALDNGYTGSTMMIDAPIEIDQGQ-GNI 174 MVGGFSFDQSQFNRATQAYRQPGS+FKPIVYSSALDNGYT ST ++DAPIEIDQGQ G + Sbjct: 464 MVGGFSFDQSQFNRATQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQV 523 Query: 175 WRPENFSTGKYQGQVTLRNALRLSLNT 201 WRP+NFS GKY G TLRNALRLSLNT Sbjct: 524 WRPDNFSNGKYLGPTTLRNALRLSLNT 550 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%) Query: 200 NTRGKAPSAVSQVLQPGDVIYADPLVTKDGNAVEGQYRLRQLPEVSGAMVAMDPWTGRVL 259 N RGK P++V+QVLQPGDVIYADPL K+GN VEGQYRL QLPEVSGAMVAMDP TGRVL Sbjct: 404 NGRGKTPTSVAQVLQPGDVIYADPLF-KEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVL 462 Query: 260 AMVGGFSFDQS 270 AMVGGFSFDQS Sbjct: 463 AMVGGFSFDQS 473 >ref|YP_001205521.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77295.1| putative membrane carboxypeptidase/penicillin-binding protein; putative exported protein [Bradyrhizobium sp. ORS 278] Length = 837 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 167/207 (80%), Positives = 188/207 (90%), Gaps = 7/207 (3%) Query: 1 VKSLSDISPWRMAVVLESNDQSARIGFQPGRELGGAISKQRETGIITMDGVRWAKS---- 56 +KSLSDISPWRMAVVLE++DQSARIGFQP RELGGA+SK+R+TG+IT+DGV+WA++ Sbjct: 347 IKSLSDISPWRMAVVLETSDQSARIGFQPPRELGGAVSKERQTGLITLDGVKWARAATGN 406 Query: 57 -KGKTPTSVAQVLQPGDVIYADPLFSKDGQRVEGQYRLRQIPELSGAMVAMDPHTGRVLA 115 +GK PTSVAQVLQPGDVIYADPLF K+G VEGQYRL Q+PE+SGAMVAMDP+TGRVLA Sbjct: 407 GRGKVPTSVAQVLQPGDVIYADPLF-KEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVLA 465 Query: 116 MVGGFSFDQSQFNRATQAYRQPGSTFKPIVYSSALDNGYTGSTMMIDAPIEIDQGQ-GNI 174 MVGGFSFDQSQFNRATQAYRQPGS+FKPIVYSSALDNGYT ST ++DAPIEIDQGQ G + Sbjct: 466 MVGGFSFDQSQFNRATQAYRQPGSSFKPIVYSSALDNGYTPSTQVVDAPIEIDQGQGGQV 525 Query: 175 WRPENFSTGKYQGQVTLRNALRLSLNT 201 WRP+NFS GKY G TLRNALRLSLNT Sbjct: 526 WRPDNFSNGKYLGPTTLRNALRLSLNT 552 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/71 (84%), Positives = 64/71 (90%), Gaps = 1/71 (1%) Query: 200 NTRGKAPSAVSQVLQPGDVIYADPLVTKDGNAVEGQYRLRQLPEVSGAMVAMDPWTGRVL 259 N RGK P++V+QVLQPGDVIYADPL K+GN VEGQYRL QLPEVSGAMVAMDP TGRVL Sbjct: 406 NGRGKVPTSVAQVLQPGDVIYADPLF-KEGNPVEGQYRLEQLPEVSGAMVAMDPNTGRVL 464 Query: 260 AMVGGFSFDQS 270 AMVGGFSFDQS Sbjct: 465 AMVGGFSFDQS 475 >ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49572.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 340 bits (873), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 165/207 (79%), Positives = 189/207 (91%), Gaps = 7/207 (3%) Query: 1 VKSLSDISPWRMAVVLESNDQSARIGFQPGRELGGAISKQRETGIITMDGVRWAKS---- 56 +KSLSDISPWRMAVVLE++DQSARIGFQP RELGGA+SKQRETG+IT+DG++WA++ Sbjct: 345 IKSLSDISPWRMAVVLETSDQSARIGFQPSRELGGAVSKQRETGLITLDGIKWARAATGP 404 Query: 57 -KGKTPTSVAQVLQPGDVIYADPLFSKDGQRVEGQYRLRQIPELSGAMVAMDPHTGRVLA 115 +G+ T+V+QVLQPGDVIYADPL+ KDG VEGQYRLRQIPE+SGAMV MDP TGRVLA Sbjct: 405 ARGRAATAVSQVLQPGDVIYADPLY-KDGNPVEGQYRLRQIPEVSGAMVVMDPWTGRVLA 463 Query: 116 MVGGFSFDQSQFNRATQAYRQPGSTFKPIVYSSALDNGYTGSTMMIDAPIEIDQGQG-NI 174 MVGGFSFDQSQFNRATQAYRQPGS+FKPIVYS+ALDNGYT ST+++DAPIEIDQGQG + Sbjct: 464 MVGGFSFDQSQFNRATQAYRQPGSSFKPIVYSAALDNGYTPSTVVLDAPIEIDQGQGAGV 523 Query: 175 WRPENFSTGKYQGQVTLRNALRLSLNT 201 WRPENFS+GK+QG VTLRNALR SLNT Sbjct: 524 WRPENFSSGKFQGPVTLRNALRQSLNT 550 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 61/69 (88%), Positives = 64/69 (92%), Gaps = 1/69 (1%) Query: 202 RGKAPSAVSQVLQPGDVIYADPLVTKDGNAVEGQYRLRQLPEVSGAMVAMDPWTGRVLAM 261 RG+A +AVSQVLQPGDVIYADPL KDGN VEGQYRLRQ+PEVSGAMV MDPWTGRVLAM Sbjct: 406 RGRAATAVSQVLQPGDVIYADPLY-KDGNPVEGQYRLRQIPEVSGAMVVMDPWTGRVLAM 464 Query: 262 VGGFSFDQS 270 VGGFSFDQS Sbjct: 465 VGGFSFDQS 473 >ref|ZP_08630068.1| multimodular transpeptidase-transglycosylase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07437.1| multimodular transpeptidase-transglycosylase [Bradyrhizobiaceae bacterium SG-6C] Length = 830 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 164/207 (79%), Positives = 185/207 (89%), Gaps = 6/207 (2%) Query: 1 VKSLSDISPWRMAVVLESNDQSARIGFQPGRELGGAISKQRETGIITMDGVRWAK----- 55 VKSLSDISPWRMAVVLE++DQSARIGFQPGRELGGA+SK R+TG+I++DGVRWAK Sbjct: 345 VKSLSDISPWRMAVVLETSDQSARIGFQPGRELGGAVSKTRDTGLISLDGVRWAKAASGP 404 Query: 56 SKGKTPTSVAQVLQPGDVIYADPLFSKDGQRVEGQYRLRQIPELSGAMVAMDPHTGRVLA 115 ++ KTPT+V QVL PGDVIY DPL KDG +VEGQYRLRQ+PE+SGAMVAMDP TGRVLA Sbjct: 405 TRFKTPTAVTQVLSPGDVIYVDPLLDKDGNKVEGQYRLRQVPEVSGAMVAMDPWTGRVLA 464 Query: 116 MVGGFSFDQSQFNRATQAYRQPGSTFKPIVYSSALDNGYTGSTMMIDAPIEIDQGQG-NI 174 MVGGFSFDQSQFNRATQAYRQPGS+FKPIVYS+A+DNGYT ST+++DAPIEIDQGQG + Sbjct: 465 MVGGFSFDQSQFNRATQAYRQPGSSFKPIVYSTAMDNGYTPSTVVVDAPIEIDQGQGAGV 524 Query: 175 WRPENFSTGKYQGQVTLRNALRLSLNT 201 WRPEN+STGKY G TLRNAL SLNT Sbjct: 525 WRPENYSTGKYYGPTTLRNALIRSLNT 551 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/70 (85%), Positives = 64/70 (91%) Query: 201 TRGKAPSAVSQVLQPGDVIYADPLVTKDGNAVEGQYRLRQLPEVSGAMVAMDPWTGRVLA 260 TR K P+AV+QVL PGDVIY DPL+ KDGN VEGQYRLRQ+PEVSGAMVAMDPWTGRVLA Sbjct: 405 TRFKTPTAVTQVLSPGDVIYVDPLLDKDGNKVEGQYRLRQVPEVSGAMVAMDPWTGRVLA 464 Query: 261 MVGGFSFDQS 270 MVGGFSFDQS Sbjct: 465 MVGGFSFDQS 474 >ref|YP_318329.1| penicillin-binding protein 1A [Nitrobacter winogradskyi Nb-255] gb|ABA04977.1| Penicillin-binding protein 1A [Nitrobacter winogradskyi Nb-255] Length = 831 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 163/207 (78%), Positives = 189/207 (91%), Gaps = 6/207 (2%) Query: 1 VKSLSDISPWRMAVVLESNDQSARIGFQPGRELGGAISKQRETGIITMDGVRWAKS---- 56 VKSLSDISPWRMAVVLES+D+SARIGFQPGRELGGA+S++R TG+IT+DGV+WAK+ Sbjct: 346 VKSLSDISPWRMAVVLESDDKSARIGFQPGRELGGAVSRERRTGLITLDGVKWAKATSGS 405 Query: 57 -KGKTPTSVAQVLQPGDVIYADPLFSKDGQRVEGQYRLRQIPELSGAMVAMDPHTGRVLA 115 +G+TPT V+QVL PGDVIYADPL +KDG+ VEG+YRLRQ+PE+SGAMVAMDP TGRVLA Sbjct: 406 ARGRTPTKVSQVLSPGDVIYADPLIAKDGKIVEGEYRLRQLPEVSGAMVAMDPRTGRVLA 465 Query: 116 MVGGFSFDQSQFNRATQAYRQPGSTFKPIVYSSALDNGYTGSTMMIDAPIEIDQGQGN-I 174 MVGGFSFDQSQFNRATQAYRQPGS+FKP+VYSSALDNGYT ST+++DAPIEIDQG+G+ + Sbjct: 466 MVGGFSFDQSQFNRATQAYRQPGSSFKPLVYSSALDNGYTPSTVVVDAPIEIDQGRGSGV 525 Query: 175 WRPENFSTGKYQGQVTLRNALRLSLNT 201 WRPEN+S KY G TLRNALRLSLNT Sbjct: 526 WRPENYSKEKYYGPQTLRNALRLSLNT 552 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 58/71 (81%), Positives = 63/71 (88%) Query: 200 NTRGKAPSAVSQVLQPGDVIYADPLVTKDGNAVEGQYRLRQLPEVSGAMVAMDPWTGRVL 259 + RG+ P+ VSQVL PGDVIYADPL+ KDG VEG+YRLRQLPEVSGAMVAMDP TGRVL Sbjct: 405 SARGRTPTKVSQVLSPGDVIYADPLIAKDGKIVEGEYRLRQLPEVSGAMVAMDPRTGRVL 464 Query: 260 AMVGGFSFDQS 270 AMVGGFSFDQS Sbjct: 465 AMVGGFSFDQS 475