BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0193.p (376 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japo... 648 0.0 ref|YP_001205521.1| putative membrane carboxypeptidase/penicilli... 641 0.0 ref|YP_781894.1| 1A family penicillin-binding protein [Rhodopseu... 640 0.0 ref|YP_001240164.1| putative membrane carboxypeptidase/penicilli... 640 0.0 ref|ZP_01046440.1| Penicillin-binding protein 1A [Nitrobacter sp... 631 e-179 >ref|NP_770947.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49572.1| penicillin-binding protein [Bradyrhizobium japonicum USDA 110] Length = 835 Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust. Identities = 312/352 (88%), Positives = 331/352 (94%), Gaps = 2/352 (0%) Query: 1 MKFLLRFFGFLFTAGTILFLAGLAAVAGLFWHFSKDLPDYSQLQNYEPPVMTRVHAADGA 60 M+ L+RF GFLF AGT++FL G+ AVAGL WHFSKDLPDYSQLQ+YEPPVMTRVHA DG+ Sbjct: 1 MRLLVRFMGFLFAAGTVVFLVGVGAVAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAVDGS 60 Query: 61 LLGEYSKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMARAAILYAQNYGSNR 120 LLGEY+KERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDY GMARA ++Y QNYGSNR Sbjct: 61 LLGEYAKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYTGMARAGLVYIQNYGSNR 120 Query: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 RPQGASTITQQVAKNFLLTNEVSF RKIKEALLAMRIE+ YSKDKILELYLNEIYLGLGA Sbjct: 121 RPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIEKTYSKDKILELYLNEIYLGLGA 180 Query: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPASLHPVRN--RAIERRNYVIDRLLENG 238 YGIAAASLVYFDKSVNELTVAEA+YLAALPKMPA+LHPVRN RAIERRNYVIDRL ENG Sbjct: 181 YGIAAASLVYFDKSVNELTVAEASYLAALPKMPATLHPVRNRDRAIERRNYVIDRLQENG 240 Query: 239 WIKQADADKARKDPLNVTSRSNGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 298 WIKQADADKARK+PL VT+RSNGAH FAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL Sbjct: 241 WIKQADADKARKEPLAVTNRSNGAHTFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 300 Query: 299 DPKVQVMARKAMVAGLVNYDEQQGYRGAIQKLDLTSDWGVPLAEIKSLSDIS 350 DPK+QVMARK MVAGLVNYDEQQGYRGA+ KLD++ DWGV LAEIKSLSDIS Sbjct: 301 DPKIQVMARKTMVAGLVNYDEQQGYRGAMSKLDISGDWGVKLAEIKSLSDIS 352 >ref|YP_001205521.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL77295.1| putative membrane carboxypeptidase/penicillin-binding protein; putative exported protein [Bradyrhizobium sp. ORS 278] Length = 837 Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust. Identities = 305/352 (86%), Positives = 331/352 (94%), Gaps = 2/352 (0%) Query: 1 MKFLLRFFGFLFTAGTILFLAGLAAVAGLFWHFSKDLPDYSQLQNYEPPVMTRVHAADGA 60 M+FL+RF GFLF AGT++FL G+AA AGL WHFSKDLPDYSQLQ+YEPPVMTRVHAADG+ Sbjct: 3 MRFLVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAADGS 62 Query: 61 LLGEYSKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMARAAILYAQNYGSNR 120 L+GEY++ERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGID+ GMARAA++YAQN+GSNR Sbjct: 63 LVGEYARERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGSNR 122 Query: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 RPQGASTITQQVAKNFLLTNEVSF RKIKEALLAMRIER YSKDKILELYLNEIYLG GA Sbjct: 123 RPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIERTYSKDKILELYLNEIYLGSGA 182 Query: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPASLHPVRN--RAIERRNYVIDRLLENG 238 YGIAAASLVYFDKSVNELTVAEA+YLAALPKMP SLHP+RN RAIERRNYV+DRLLENG Sbjct: 183 YGIAAASLVYFDKSVNELTVAEASYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLENG 242 Query: 239 WIKQADADKARKDPLNVTSRSNGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 298 WIKQADA+KARKDPL + SR+ GAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL Sbjct: 243 WIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 302 Query: 299 DPKVQVMARKAMVAGLVNYDEQQGYRGAIQKLDLTSDWGVPLAEIKSLSDIS 350 DPK+QVMARKAMVAGLV YD++QGYRG + KLD + DWG+ LAEIKSLSDIS Sbjct: 303 DPKIQVMARKAMVAGLVRYDQEQGYRGPVSKLDTSGDWGLKLAEIKSLSDIS 354 >ref|YP_781894.1| 1A family penicillin-binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ06914.1| penicillin-binding protein, 1A family [Rhodopseudomonas palustris BisA53] Length = 830 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 309/352 (87%), Positives = 331/352 (94%), Gaps = 2/352 (0%) Query: 1 MKFLLRFFGFLFTAGTILFLAGLAAVAGLFWHFSKDLPDYSQLQNYEPPVMTRVHAADGA 60 M+ LLRF GFLF AGTI+FL G+AA AGL WHFSKDLPDYSQLQ+YEPPVMTRVHA DGA Sbjct: 1 MRLLLRFMGFLFAAGTIVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAGDGA 60 Query: 61 LLGEYSKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMARAAILYAQNYGSNR 120 LLGEYSKERRLYLPIQAVPK+VINAFLAAEDKNFYEHGGIDY GMARAA+LYAQN GSNR Sbjct: 61 LLGEYSKERRLYLPIQAVPKMVINAFLAAEDKNFYEHGGIDYLGMARAALLYAQNIGSNR 120 Query: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKD+ILELYLNEIYLGLGA Sbjct: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDRILELYLNEIYLGLGA 180 Query: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPASLHPVRN--RAIERRNYVIDRLLENG 238 YGIAAASLVYFDKSVNELT++EAAYLAALPK PA LHPVRN RAIERRNYVIDRL+ENG Sbjct: 181 YGIAAASLVYFDKSVNELTISEAAYLAALPKAPAVLHPVRNRDRAIERRNYVIDRLVENG 240 Query: 239 WIKQADADKARKDPLNVTSRSNGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 298 WIKQADADKARKDPL+VTSR+N AHIFAGEYFAEEVRRD+FERYGEKKLYEGGLSVRTTL Sbjct: 241 WIKQADADKARKDPLSVTSRTNAAHIFAGEYFAEEVRRDVFERYGEKKLYEGGLSVRTTL 300 Query: 299 DPKVQVMARKAMVAGLVNYDEQQGYRGAIQKLDLTSDWGVPLAEIKSLSDIS 350 DPK+QVMAR+ M AGLV +DE QG+RGA+ KLD++ DWGV LA++KSLSDIS Sbjct: 301 DPKLQVMARQTMTAGLVRFDEAQGWRGALSKLDISGDWGVKLADVKSLSDIS 352 >ref|YP_001240164.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ36258.1| putative membrane carboxypeptidase/penicillin-binding protein [Bradyrhizobium sp. BTAi1] Length = 835 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 304/352 (86%), Positives = 331/352 (94%), Gaps = 2/352 (0%) Query: 1 MKFLLRFFGFLFTAGTILFLAGLAAVAGLFWHFSKDLPDYSQLQNYEPPVMTRVHAADGA 60 M+F++RF GFLF AGT++FL G+AA AGL WHFSKDLPDYSQLQ+YEPPVMTRVHA DG+ Sbjct: 1 MRFVVRFLGFLFAAGTVVFLVGVAAAAGLIWHFSKDLPDYSQLQDYEPPVMTRVHAVDGS 60 Query: 61 LLGEYSKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMARAAILYAQNYGSNR 120 L+GEY++ERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGID+ GMARAA++YAQN+GSNR Sbjct: 61 LVGEYARERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDFTGMARAAVVYAQNFGSNR 120 Query: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 RPQGASTITQQVAKNFLLTNEVSF RKIKEALLAMRIER YSKDKILELYLNEIYLG GA Sbjct: 121 RPQGASTITQQVAKNFLLTNEVSFARKIKEALLAMRIERTYSKDKILELYLNEIYLGSGA 180 Query: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPASLHPVRN--RAIERRNYVIDRLLENG 238 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMP SLHP+RN RAIERRNYV+DRLLENG Sbjct: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPGSLHPIRNRDRAIERRNYVVDRLLENG 240 Query: 239 WIKQADADKARKDPLNVTSRSNGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 298 WIKQADA+KARKDPL + SR+ GAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL Sbjct: 241 WIKQADAEKARKDPLTIASRNTGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 300 Query: 299 DPKVQVMARKAMVAGLVNYDEQQGYRGAIQKLDLTSDWGVPLAEIKSLSDIS 350 DPK+QVMARKAMVAGLV YD++QGYRG + KLD++ DWG+ LAEIKSLSDIS Sbjct: 301 DPKIQVMARKAMVAGLVRYDQEQGYRGPVSKLDISGDWGLKLAEIKSLSDIS 352 >ref|ZP_01046440.1| Penicillin-binding protein 1A [Nitrobacter sp. Nb-311A] gb|EAQ35530.1| Penicillin-binding protein 1A [Nitrobacter sp. Nb-311A] Length = 829 Score = 631 bits (1628), Expect = e-179, Method: Compositional matrix adjust. Identities = 305/352 (86%), Positives = 329/352 (93%), Gaps = 2/352 (0%) Query: 1 MKFLLRFFGFLFTAGTILFLAGLAAVAGLFWHFSKDLPDYSQLQNYEPPVMTRVHAADGA 60 M+ LLRF GFLF AGTILFL G+AAVAGL WHFSKDLPDYSQLQNYEPPVMTRVHA+DG+ Sbjct: 1 MRLLLRFTGFLFAAGTILFLVGVAAVAGLIWHFSKDLPDYSQLQNYEPPVMTRVHASDGS 60 Query: 61 LLGEYSKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMARAAILYAQNYGSNR 120 LLGEY+KERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGM RAA+LYAQNYG+N+ Sbjct: 61 LLGEYAKERRLYLPIQAVPKLVINAFLAAEDKNFYEHGGIDYQGMLRAALLYAQNYGTNK 120 Query: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA Sbjct: 121 RPQGASTITQQVAKNFLLTNEVSFTRKIKEALLAMRIERAYSKDKILELYLNEIYLGLGA 180 Query: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKMPASLHPVRN--RAIERRNYVIDRLLENG 238 YGIAAASLVYFDKSVNELTVAEAAYLAALPK P++LHPV+N RAIERR+YVIDRLLENG Sbjct: 181 YGIAAASLVYFDKSVNELTVAEAAYLAALPKAPSTLHPVKNRERAIERRDYVIDRLLENG 240 Query: 239 WIKQADADKARKDPLNVTSRSNGAHIFAGEYFAEEVRRDIFERYGEKKLYEGGLSVRTTL 298 WI QADA++ARK PL V SR+NGAH FAGEYFAEEVRRD+FERYGEKKLYEGGLSVRTTL Sbjct: 241 WINQADAERARKQPLMVASRANGAHTFAGEYFAEEVRRDLFERYGEKKLYEGGLSVRTTL 300 Query: 299 DPKVQVMARKAMVAGLVNYDEQQGYRGAIQKLDLTSDWGVPLAEIKSLSDIS 350 DP++QV+ARK M GLV YDE QG+RG + KLD++ DWGV LAE+KSLSDIS Sbjct: 301 DPELQVIARKTMANGLVTYDEAQGWRGPVSKLDISGDWGVKLAELKSLSDIS 352