BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0183.p (630 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 732 0.0 ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium ja... 720 0.0 ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 711 0.0 ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Brady... 709 0.0 ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopse... 707 0.0 >ref|YP_781010.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] gb|ABJ06030.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 928 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/546 (64%), Positives = 433/546 (79%) Query: 74 TERRNLMTAVNNIPQGLVLYDASARIIICNRPYIEMFGLSPDVAKPGCTMHRLIAHRQET 133 TER L A++NI +GL++YDA R+++CNR YIEM GLSP+V KPG L+A+R++ Sbjct: 372 TERERLDIAISNITRGLLMYDADGRLVVCNRQYIEMHGLSPEVVKPGLPFCDLMAYRKQI 431 Query: 134 GSFEGDVDDFCDAIIGNVKLGRATRQLTQAPGGRAIEIVNKPLPEGGWVATIQDVTERTR 193 GSF+GDV++FC +I N+ G+ +R L + GR+IE V KPLP GGW+ +DVT+R Sbjct: 432 GSFDGDVEEFCSSIRRNLADGKISRYLLETGDGRSIESVTKPLPTGGWLVMTEDVTQRRL 491 Query: 194 TENKIAHMAHYDALTDLPNRVLFRERLERALKAIRPDQQLAVMYIDIDEFKAVNDALGHQ 253 + +IAHMAHYDALTDLPNRVLF ERLE AL A PD QLAV YIDID+FK+VND+LGH Sbjct: 492 YDERIAHMAHYDALTDLPNRVLFHERLESALDAREPDDQLAVFYIDIDQFKSVNDSLGHS 551 Query: 254 IGDELLRAIADRLRGCVGDTDVAARLGGDEFAVIQTAVRDQTETMQLLAAIYQSIRRPID 313 IGDELL+ +ADRLRGC+ TD AAR+GGDEFA+IQTAV T+T L+ IY +IR+P D Sbjct: 552 IGDELLKIVADRLRGCLAATDFAARIGGDEFAIIQTAVAKATDTTDLVERIYAAIRKPYD 611 Query: 314 CSGHLITTDASIGIAVAPADGLDIDQLLRNADLALYGAKSDGRRTYRFFEAGMDARAKAR 373 C+GHL+T DASIGIA+AP G ++DQLL+NADLA+YGAK++GRRTYRFFE M+AR A Sbjct: 612 CAGHLLTADASIGIALAPQHGANLDQLLKNADLAMYGAKAEGRRTYRFFEPAMEARVIAL 671 Query: 374 RSLELELRQAIADGSFELHYQPLLHLEEGQVSCCEALVRWRHPERGTVSPADFIPIAEDT 433 R++E++LRQAIADG FE++YQP L L + +V+ CEAL+RWRHP RG +SPA+FIP+AE+T Sbjct: 672 RTMEIDLRQAIADGGFEIYYQPQLRLCDDKVTGCEALLRWRHPVRGMISPAEFIPVAEET 731 Query: 434 GLINDLGHWVLNTACREAMNWPEHVHVAVNVSPIQFKSQTLALNVAAALAATGLAPSRLE 493 GLIN LG WVL +C EA+ WP V V+VNVSP+QF S+ AL VAAALA +GL RLE Sbjct: 732 GLINQLGEWVLVESCAEAVKWPGDVKVSVNVSPVQFGSEGFALKVAAALANSGLPAHRLE 791 Query: 494 LEITEAVLIRDDEAALDILHQLRELGVRIALDDFGTGYSSLSYLRSFPFDKIKIDRAFIK 553 LEITEAVLIRDDEAAL +LHQ+R LGV IALDDFGTGYSSLSYLR FPFDKIKIDR+FIK Sbjct: 792 LEITEAVLIRDDEAALTMLHQIRALGVGIALDDFGTGYSSLSYLRRFPFDKIKIDRSFIK 851 Query: 554 DLAGTGASSTIVQAVVNIAAASDMTTTAEGVETEQQRNLLRILGCTEMQGYLFSRPVASA 613 ++ S+ IV+AVV+IAAA MTTTAEGVETE Q N LR LGC+EMQGYL+S PV ++ Sbjct: 852 NIEDANGSAHIVKAVVDIAAAQRMTTTAEGVETEGQLNELRRLGCSEMQGYLYSPPVPAS 911 Query: 614 DIRKLL 619 + LL Sbjct: 912 KLAALL 917 >ref|NP_771453.1| hypothetical protein blr4813 [Bradyrhizobium japonicum USDA 110] dbj|BAC50078.1| blr4813 [Bradyrhizobium japonicum USDA 110] Length = 917 Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/596 (59%), Positives = 448/596 (75%), Gaps = 14/596 (2%) Query: 40 WSEREGLLMA-----AFAIMAVIVFL---LLKRHEISDERLATERRNLMTAVNNIPQGLV 91 W E+ G+L++ A AI V++ + LL++H +S ERL E++ L AVNN+ QGL+ Sbjct: 307 WREQIGILISVAASSALAIAGVLIAIVRKLLEQHRLSRERLTLEKQRLDRAVNNMTQGLL 366 Query: 92 LYDASARIIICNRPYIEMFGLSPDVAKPGCTMHRLIAHRQETGSFEGDVDDFCDAIIGNV 151 L+DA R+++CN+ YIEM+GLSP+V KPG + H +IAHR TGSF GDVD + ++G++ Sbjct: 367 LFDAEQRLVVCNQRYIEMYGLSPEVVKPGSSFHDIIAHRSATGSFTGDVDGYVARVLGDI 426 Query: 152 KLGRATRQLTQAPGGRAIEIVNKPLPEGGWVATIQDVTERTRTENKIAHMAHYDALTDLP 211 + + GR+I I+N+PL +GGWVAT +D+TER R E +I H+AHYDALTDLP Sbjct: 427 HARNS--MVVDTADGRSIHILNEPLADGGWVATHEDITERRRIEERITHLAHYDALTDLP 484 Query: 212 NRVLFRERLERALKAIRPDQQLAVMYIDIDEFKAVNDALGHQIGDELLRAIADRLRGCVG 271 NR +F E L + L AI + +AV YIDIDEFK VNDALGH +GDELL+++A L C G Sbjct: 485 NRAMFHEHLRQELAAITDGEAIAVHYIDIDEFKGVNDALGHLVGDELLKSVATSLSRCAG 544 Query: 272 DTDVAARLGGDEFAVIQTAVRDQTETMQLLAAIYQSIRRPIDCSGHLITTDASIGIAVAP 331 D ARLGGDEFA++Q AV + L+A ++Q+IR P DC GH +TTDASIGIA+AP Sbjct: 545 PADFVARLGGDEFAIVQGAVTSPDQVNDLVARVFQAIRAPFDCMGHHLTTDASIGIALAP 604 Query: 332 ADGLDIDQLLRNADLALYGAKSDGRRTYRFFEAGMDARAKARRSLELELRQAIA----DG 387 G +DQ+L+NADLA+Y AKS GRRTYRFFE MDA+ + RR LE++LR AIA +G Sbjct: 605 GHGTVLDQILKNADLAMYAAKSAGRRTYRFFEPEMDAKVRERRQLEIDLRHAIAQGGLEG 664 Query: 388 SFELHYQPLLHLEEGQVSCCEALVRWRHPERGTVSPADFIPIAEDTGLINDLGHWVLNTA 447 E++YQP L L++ +++ CEALVRWRHPERG VSPA+FIPIAEDTGLIN++G WVL TA Sbjct: 665 GLEVYYQPCLGLKDDRITGCEALVRWRHPERGMVSPAEFIPIAEDTGLINEIGEWVLATA 724 Query: 448 CREAMNWPEHVHVAVNVSPIQFKSQTLALNVAAALAATGLAPSRLELEITEAVLIRDDEA 507 CR+A +WP+ + +AVNVSP+QFKS TLAL + AALAA+ SRLELEITEAVLIRDD+ Sbjct: 725 CRDAASWPDDIRLAVNVSPVQFKSGTLALKIMAALAASNFPASRLELEITEAVLIRDDDT 784 Query: 508 ALDILHQLRELGVRIALDDFGTGYSSLSYLRSFPFDKIKIDRAFIKDLAGTGASSTIVQA 567 AL ILHQLR +GVRIALDDFGTGYSSLSYL FPFDKIKIDR F+ D+AG S++IVQA Sbjct: 785 ALAILHQLRAIGVRIALDDFGTGYSSLSYLHRFPFDKIKIDRCFVNDIAGPDGSASIVQA 844 Query: 568 VVNIAAASDMTTTAEGVETEQQRNLLRILGCTEMQGYLFSRPVASADIRKLLSSHR 623 VVN+AAA MTTTAEGVETE+Q+ LLR LGC+EMQGYLFS + + +L + HR Sbjct: 845 VVNLAAARRMTTTAEGVETEEQQRLLRTLGCSEMQGYLFSAAKPADKVLELFALHR 900 >ref|YP_534466.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] gb|ABD90147.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris BisB18] Length = 915 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/604 (57%), Positives = 455/604 (75%), Gaps = 14/604 (2%) Query: 27 LLVGSLLGSATAQWSEREGLLM--AAFAIMAVIVFL------LLKRHEISDERLATERRN 78 ++V + + S+ A W + L+ AA + M + L L ++H + +L +++ Sbjct: 298 MVVTTTVSSSLADWYRQTRFLIIVAAGSTMIIAAILFLIIRQLTRQHRATQRQLTRDKQR 357 Query: 79 LMTAVNNIPQGLVLYDASARIIICNRPYIEMFGLSPDVAKPGCTMHRLIAHRQETGSFEG 138 L TA+NN+ QGL+L+D+SAR+++CN+ Y+EM+GLS +V KPGC++ +++A R+ GSFEG Sbjct: 358 LSTAINNMTQGLLLFDSSARLVVCNQRYMEMYGLSAEVVKPGCSLRQILAERKAAGSFEG 417 Query: 139 DVDDFCDAIIGNVKLGRATRQLTQA--PGGRAIEIVNKPLPEGGWVATIQDVTERTRTEN 196 D+D +C + +V A R +T A P GR+I+I +P PEGGWVAT +D+T+R R+E Sbjct: 418 DIDAYCADTLSHV----AARNVTVAVTPDGRSIQIATEPAPEGGWVATHEDITDRRRSEE 473 Query: 197 KIAHMAHYDALTDLPNRVLFRERLERALKAIRPDQQLAVMYIDIDEFKAVNDALGHQIGD 256 +IA++AHYD LT LPNR FRER+E + + LA++YIDIDEFKA+ND+LGH +GD Sbjct: 474 RIAYLAHYDELTSLPNRTSFRERIEDEFERVARGGTLALLYIDIDEFKAINDSLGHPVGD 533 Query: 257 ELLRAIADRLRGCVGDTDVAARLGGDEFAVIQTAVRDQTETMQLLAAIYQSIRRPIDCSG 316 LL+ +A RL+ C+ +TD ARLGGDEFA++QTA RD E +L+A ++++IR P +C G Sbjct: 534 ALLKIVAARLKACLRETDFVARLGGDEFAILQTAPRDVQEVTELVARLFETIRAPCECLG 593 Query: 317 HLITTDASIGIAVAPADGLDIDQLLRNADLALYGAKSDGRRTYRFFEAGMDARAKARRSL 376 H I+TDASIGIA+AP G D DQL++NADLA+Y AK+DGRRT RFFE M+A AK RR+L Sbjct: 594 HQISTDASIGIALAPPHGTDTDQLIKNADLAMYQAKADGRRTCRFFEPRMEASAKERRTL 653 Query: 377 ELELRQAIADGSFELHYQPLLHLEEGQVSCCEALVRWRHPERGTVSPADFIPIAEDTGLI 436 ELELR+AIAD +FE++YQP++ L G V CEAL+RWRHP+RG +SPA FIP+AE TGLI Sbjct: 654 ELELRKAIADCAFEIYYQPIVELRNGDVIGCEALLRWRHPQRGMISPAKFIPVAEATGLI 713 Query: 437 NDLGHWVLNTACREAMNWPEHVHVAVNVSPIQFKSQTLALNVAAALAATGLAPSRLELEI 496 N+LG WVL TAC EA NWP + VAVNVSP+QFKS+TL L VAAALAA+GL SRLELEI Sbjct: 714 NELGEWVLRTACAEAANWPAEMSVAVNVSPVQFKSRTLPLKVAAALAASGLPASRLELEI 773 Query: 497 TEAVLIRDDEAALDILHQLRELGVRIALDDFGTGYSSLSYLRSFPFDKIKIDRAFIKDLA 556 TEAVLI DDE AL +LH+L+ LGVRIALDDFGTGYSSLSYL+ FPFDKIKIDR FI +A Sbjct: 774 TEAVLIDDDETALSVLHELKTLGVRIALDDFGTGYSSLSYLQRFPFDKIKIDRCFIDGIA 833 Query: 557 GTGASSTIVQAVVNIAAASDMTTTAEGVETEQQRNLLRILGCTEMQGYLFSRPVASADIR 616 +S IVQAVVNIA A MTTTAEGVET +QR+LLR LGCT MQGYLFS +A +R Sbjct: 834 RPDGASAIVQAVVNIATARHMTTTAEGVETAEQRDLLRGLGCTHMQGYLFSPAIAPDTVR 893 Query: 617 KLLS 620 +L + Sbjct: 894 QLFA 897 >ref|YP_001240427.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] gb|ABQ36521.1| diguanylate cyclase/phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 907 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/601 (57%), Positives = 445/601 (74%), Gaps = 11/601 (1%) Query: 31 SLLGSATAQWSEREGLLMAA--------FAIMAVIVFLLLKRHEISDERLATERRNLMTA 82 + + +A A W E+ L+ ++ V+V L+ HE S++RL E+ L A Sbjct: 292 TTVSAALADWREQMRFLIGVGVTSVLLIAGMLYVVVRRLISDHEASNQRLTLEKERLDKA 351 Query: 83 VNNIPQGLVLYDASARIIICNRPYIEMFGLSPDVAKPGCTMHRLIAHRQETGSFEGDVDD 142 VNN+ QGL+++DAS R++I N+ YIEM+GLS DV KPGCT LIAHR+ TGSF GD + Sbjct: 352 VNNMTQGLLMFDASERLVISNQRYIEMYGLSADVVKPGCTFRELIAHRKATGSFIGDEAE 411 Query: 143 FCDAIIGNVKLGRATRQLTQAPGGRAIEIVNKPLPEGGWVATIQDVTERTRTENKIAHMA 202 + I+ ++ GR L + P GR+IEIVN+PL +GGW+AT +D+TER + E +I H+A Sbjct: 412 YVATILRDI--GRKKSHLIETPDGRSIEIVNEPLADGGWLATHEDITERRKAEQRITHLA 469 Query: 203 HYDALTDLPNRVLFRERLERALKAIRPDQQLAVMYIDIDEFKAVNDALGHQIGDELLRAI 262 HYDALT+LPNR LF ERL++ L + Q+LA+ YIDIDEFK VND+LGH IGDELL+++ Sbjct: 470 HYDALTELPNRTLFHERLKQELIHVSAGQRLALHYIDIDEFKGVNDSLGHLIGDELLKSV 529 Query: 263 ADRLRGCVGDTDVAARLGGDEFAVIQTAVRDQTETMQLLAAIYQSIRRPIDCSGHLITTD 322 A L CVG+ ARLGGDEFAV+QT +R++ + QL+ I +IR P DC GH +T D Sbjct: 530 AASLSTCVGEAGFVARLGGDEFAVVQTGIRNRGDVEQLIEDILAAIRAPRDCLGHQLTAD 589 Query: 323 ASIGIAVAPADGLDIDQLLRNADLALYGAKSDGRRTYRFFEAGMDARAKARRSLELELRQ 382 ASIG+A+ P G ++DQ+++NADLA+Y AK GRRT+RFFE MDA+ KAR LE++LRQ Sbjct: 590 ASIGVALIPEHGTELDQIMKNADLAMYAAKGAGRRTWRFFEPEMDAQVKARHQLEVDLRQ 649 Query: 383 AIADGSFELHYQPLLHLEEGQVSCCEALVRWRHPERGTVSPADFIPIAEDTGLINDLGHW 442 A+ D E++YQP + L++ ++ CEALVRW+HP RG VSPA+FIPIAEDTGLIN LG Sbjct: 650 AMVDDQLEVYYQPCVSLQDDRIVGCEALVRWKHPVRGNVSPAEFIPIAEDTGLINQLGER 709 Query: 443 VLNTACREAMNWPEHVHVAVNVSPIQFKSQTLALNVAAALAATGLAPSRLELEITEAVLI 502 VL+ AC EA WP+ + +AVNVSP+QFKS TLAL VA ALA +GL+P RLELEITEAVLI Sbjct: 710 VLHLACAEAATWPDDIRLAVNVSPVQFKSGTLALKVAHALATSGLSPHRLELEITEAVLI 769 Query: 503 RDDEAALDILHQLRELGVRIALDDFGTGYSSLSYLRSFPFDKIKIDRAFIKDLAGTGASS 562 RDD+ ALD LHQLR LGVRIALDDFGTGYSSLSYL+ PFDKIKIDR F+KD+ + S+ Sbjct: 770 RDDD-ALDTLHQLRALGVRIALDDFGTGYSSLSYLQRIPFDKIKIDRCFVKDITESEGSA 828 Query: 563 TIVQAVVNIAAASDMTTTAEGVETEQQRNLLRILGCTEMQGYLFSRPVASADIRKLLSSH 622 +IVQAVVNIAA M+TTAEGVETE QR +L+ LGC+EMQGYLFS P +AD+R L + Sbjct: 829 SIVQAVVNIAAIRKMSTTAEGVETEAQRQVLKRLGCSEMQGYLFSPPKPAADVRSLFKAQ 888 Query: 623 R 623 R Sbjct: 889 R 889 >ref|YP_488238.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] gb|ABD09327.1| diguanylate cyclase/phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 904 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/598 (56%), Positives = 447/598 (74%), Gaps = 10/598 (1%) Query: 36 ATAQWSEREGLLMAAFAIMAVIVFLLL--------KRHEISDERLATERRNLMTAVNNIP 87 A A W ++ LL++A + A++V ++L K+H+ + RLA +++ L TA+NN+ Sbjct: 306 ALAAWRKQTRLLISAATVSALVVSVILLLIIRQLGKQHQATQARLALDKQRLNTAINNMS 365 Query: 88 QGLVLYDASARIIICNRPYIEMFGLSPDVAKPGCTMHRLIAHRQETGSFEGDVDDFCDAI 147 QGL+L+DA+ R+++CN+ YI+M+GLSP++ KPGC+ +IAHR GSF+GDVD++C I Sbjct: 366 QGLLLFDAAQRLVVCNQRYIQMYGLSPEIVKPGCSFRDIIAHRHARGSFKGDVDEYCGRI 425 Query: 148 IGNVKLGRATRQLTQAPGGRAIEIVNKPLPEGGWVATIQDVTERTRTENKIAHMAHYDAL 207 + V + + + R+I+I + P+P GGWVAT +D+TER R KIA++AHYD+L Sbjct: 426 VQAVIVEKTSA--VHGSHDRSIQISSVPVPGGGWVATHEDITERIRDSEKIAYLAHYDSL 483 Query: 208 TDLPNRVLFRERLERALKAIRPDQQLAVMYIDIDEFKAVNDALGHQIGDELLRAIADRLR 267 TDLPNR LFR+RLER L R ++YIDIDEFK++ND LGH IGDELL+ +A RLR Sbjct: 484 TDLPNRSLFRQRLERELHPGRGSAACTLLYIDIDEFKSINDTLGHPIGDELLKQVAVRLR 543 Query: 268 GCVGDTDVAARLGGDEFAVIQTAVRDQTETMQLLAAIYQSIRRPIDCSGHLITTDASIGI 327 CVG +D ARLGGDEFAVI T+ D + L I Q+IR P C GH ++TDASIGI Sbjct: 544 ECVGASDFVARLGGDEFAVIATSAADSDQATALAERILQTIRAPYHCLGHHLSTDASIGI 603 Query: 328 AVAPADGLDIDQLLRNADLALYGAKSDGRRTYRFFEAGMDARAKARRSLELELRQAIADG 387 A+AP DG DIDQL++NADLA+Y AK+ GRRT+RFFE MDA A+ARR LE +LR AIADG Sbjct: 604 AIAPGDGEDIDQLIKNADLAMYSAKAGGRRTFRFFEPAMDAIARARRELEFDLRTAIADG 663 Query: 388 SFELHYQPLLHLEEGQVSCCEALVRWRHPERGTVSPADFIPIAEDTGLINDLGHWVLNTA 447 FE+HYQP++ L +++ CEAL+RWRHP RG +SPA+FIP+AEDTGLIN++G W L A Sbjct: 664 GFEIHYQPIVDLRSDEITGCEALLRWRHPTRGMISPAEFIPVAEDTGLINEIGGWTLAAA 723 Query: 448 CREAMNWPEHVHVAVNVSPIQFKSQTLALNVAAALAATGLAPSRLELEITEAVLIRDDEA 507 C EA+ W +++ +AVN+SP+QF+ TLAL VA+ L +TGL RLELE+TEAVLI DD+A Sbjct: 724 CAEAVQWEQNITLAVNISPVQFRQPTLALLVASVLGSTGLPAQRLELEVTEAVLIHDDDA 783 Query: 508 ALDILHQLRELGVRIALDDFGTGYSSLSYLRSFPFDKIKIDRAFIKDLAGTGASSTIVQA 567 AL L+ LR LGVRI+LDDFGTGYSSLSYL+ FPFDKIKIDRAF++++ T S+ I++A Sbjct: 784 ALTTLNLLRALGVRISLDDFGTGYSSLSYLQRFPFDKIKIDRAFVENIDTTEGSTAIIEA 843 Query: 568 VVNIAAASDMTTTAEGVETEQQRNLLRILGCTEMQGYLFSRPVASADIRKLLSSHRET 625 VVNIAA+ MTTTAEGVET +QR++LR LGCT+MQG+LFS V +A R LL+ R T Sbjct: 844 VVNIAASRSMTTTAEGVETVRQRDILRGLGCTQMQGWLFSPAVPAAKFRMLLAERRAT 901