BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0172.p (369 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_770446.1| substrate-binding protein [Bradyrhizobium japon... 627 e-178 ref|YP_001239515.1| putrescine ABC transporter periplasmic bindi... 625 e-177 ref|ZP_08629385.1| putrescine ABC transporter putrescine-binding... 620 e-176 ref|YP_780939.1| extracellular solute-binding protein [Rhodopseu... 611 e-173 ref|YP_001206628.1| putrescine ABC transporter periplasmic bindi... 609 e-172 >ref|NP_770446.1| substrate-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49071.1| blr3806 [Bradyrhizobium japonicum USDA 110] Length = 374 Score = 627 bits (1618), Expect = e-178, Method: Compositional matrix adjust. Identities = 296/343 (86%), Positives = 319/343 (93%) Query: 27 AEERTVNFYNWSNYMAPEVLEDFTKETGIKVVYDTFDANETLETRLLAGKSGYDVVVPTG 86 AEER VNFYNWSNYMAP+VLE FTKETGIKVVYDTFDANETLETRL+AGKSGYDVVVPT Sbjct: 32 AEERVVNFYNWSNYMAPDVLEAFTKETGIKVVYDTFDANETLETRLMAGKSGYDVVVPTA 91 Query: 87 YFLQRQITAKVFLKLDKSKLPNLANAWPVVTSQLATYDPGNNYGANYMWGTTGIGYNVKI 146 YFLQRQI A +F KLDKS+LPNL++AWPVVT +L YDPGN Y ANYMWGTTGIGYNV Sbjct: 92 YFLQRQIKANIFQKLDKSRLPNLSHAWPVVTQRLGIYDPGNVYAANYMWGTTGIGYNVAK 151 Query: 147 AEKILGPDAKIDSWDMVFKPENLAKFKDCGIHMLDSADDILPAALSYLGLDPNSTKQADL 206 ++ILGPDAKIDSWD+VFKPENLAKFKDCG+HMLDSADDI PAALSYLGLDPNSTKQADL Sbjct: 152 VKQILGPDAKIDSWDIVFKPENLAKFKDCGVHMLDSADDIFPAALSYLGLDPNSTKQADL 211 Query: 207 EKAADLVIRIRPYVRKFHSSEYLSALASGEICFVVGWSGDIMQARSRAAEANSGVEIGYT 266 EKAAD V ++RP VRKFHSSEYLSALA+GEICFVVGWSGDIMQAR+RAAEA SGVEIGYT Sbjct: 212 EKAADAVAKVRPSVRKFHSSEYLSALATGEICFVVGWSGDIMQARARAAEAKSGVEIGYT 271 Query: 267 IPKEGAQMFFDNLAIPSDAKNVAEAYELINYLYRPEVAAKNSNFLSYANGNLASQKLIDP 326 IPKEGAQMFFDNLAIP+DAKNV+EAYELINYLYRP+VAAKNS+FLSYANGNLASQKL+DP Sbjct: 272 IPKEGAQMFFDNLAIPADAKNVSEAYELINYLYRPDVAAKNSDFLSYANGNLASQKLVDP 331 Query: 327 KIFTDKNIYPDEAMQKKLFVITARDPATQRIINRLWTRVKTGK 369 KI DKNIYPDEA KLFVITAR+PATQRIINRLWT+VKTG+ Sbjct: 332 KILGDKNIYPDEATLAKLFVITAREPATQRIINRLWTKVKTGR 374 >ref|YP_001239515.1| putrescine ABC transporter periplasmic binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ35609.1| putrescine ABC transporter, periplasmic binding protein [Bradyrhizobium sp. BTAi1] Length = 368 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 296/356 (83%), Positives = 323/356 (90%) Query: 14 AVATVLLLSASADAEERTVNFYNWSNYMAPEVLEDFTKETGIKVVYDTFDANETLETRLL 73 AV T+ L +++ AEER VNFYNWSNYMAP VL+DFTKETGIKVVYDTFDANETLETRLL Sbjct: 13 AVVTLTLSASAGHAEERVVNFYNWSNYMAPGVLDDFTKETGIKVVYDTFDANETLETRLL 72 Query: 74 AGKSGYDVVVPTGYFLQRQITAKVFLKLDKSKLPNLANAWPVVTSQLATYDPGNNYGANY 133 AGKSGYDVVVPT YFLQRQI AK+F LDK+KLPNLANAWPVVT +LATYDPGN + ANY Sbjct: 73 AGKSGYDVVVPTAYFLQRQIKAKIFQPLDKTKLPNLANAWPVVTERLATYDPGNQFAANY 132 Query: 134 MWGTTGIGYNVKIAEKILGPDAKIDSWDMVFKPENLAKFKDCGIHMLDSADDILPAALSY 193 MWGTTGIGYNVK EKILG A+IDSWDMVFKPENLAKFKDCG+HMLDSADDI PAAL+Y Sbjct: 133 MWGTTGIGYNVKTIEKILGAGARIDSWDMVFKPENLAKFKDCGVHMLDSADDIFPAALNY 192 Query: 194 LGLDPNSTKQADLEKAADLVIRIRPYVRKFHSSEYLSALASGEICFVVGWSGDIMQARSR 253 LGLDPNSTKQADLEKAA++V ++ P VRKFHSSEYLSALA+GEIC VVGWSGDIMQARSR Sbjct: 193 LGLDPNSTKQADLEKAAEVVGKVAPSVRKFHSSEYLSALATGEICLVVGWSGDIMQARSR 252 Query: 254 AAEANSGVEIGYTIPKEGAQMFFDNLAIPSDAKNVAEAYELINYLYRPEVAAKNSNFLSY 313 A EA +G+EIGY IPKEGAQMFFDN AIP+DA++V EAY LINYLYRPEVAAKNS+FLSY Sbjct: 253 AEEAKNGIEIGYAIPKEGAQMFFDNFAIPADAQHVTEAYALINYLYRPEVAAKNSDFLSY 312 Query: 314 ANGNLASQKLIDPKIFTDKNIYPDEAMQKKLFVITARDPATQRIINRLWTRVKTGK 369 ANGNLASQKLIDPKI DKNIYPD+A KKLFVITAR+PATQRIINRLWT+VKTG+ Sbjct: 313 ANGNLASQKLIDPKILGDKNIYPDDATLKKLFVITAREPATQRIINRLWTKVKTGR 368 >ref|ZP_08629385.1| putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07878.1| putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) [Bradyrhizobiaceae bacterium SG-6C] Length = 370 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 299/367 (81%), Positives = 329/367 (89%), Gaps = 6/367 (1%) Query: 6 RRLVSFVGAVATVLLLSAS---ADAEERTVNFYNWSNYMAPEVLEDFTKETGIKVVYDTF 62 RRL AVA +LSAS A A++R VNFYNWSNYMAP VLE+FTKETGIKV YDTF Sbjct: 7 RRLTV---AVAVAGILSASVPFAQAQQRNVNFYNWSNYMAPGVLEEFTKETGIKVTYDTF 63 Query: 63 DANETLETRLLAGKSGYDVVVPTGYFLQRQITAKVFLKLDKSKLPNLANAWPVVTSQLAT 122 DANET+ETRLLAGKSGYDVVVPT YFLQRQI A +F KLDKSKLPNLANAWP VT +LA Sbjct: 64 DANETVETRLLAGKSGYDVVVPTAYFLQRQIAANIFQKLDKSKLPNLANAWPEVTKRLAI 123 Query: 123 YDPGNNYGANYMWGTTGIGYNVKIAEKILGPDAKIDSWDMVFKPENLAKFKDCGIHMLDS 182 YDPGN + ANYMWGTTGIGYNVK ++I+GP+AK+DSW VF PENLAKFKDCGIHMLDS Sbjct: 124 YDPGNAFAANYMWGTTGIGYNVKKVQEIIGPEAKLDSWSAVFVPENLAKFKDCGIHMLDS 183 Query: 183 ADDILPAALSYLGLDPNSTKQADLEKAADLVIRIRPYVRKFHSSEYLSALASGEICFVVG 242 ADDILPAAL+YLGLDPNSTKQADLEKAA+LV ++RPYVRKFHSSEYL+ALA+GEICFVVG Sbjct: 184 ADDILPAALNYLGLDPNSTKQADLEKAAELVSKVRPYVRKFHSSEYLNALATGEICFVVG 243 Query: 243 WSGDIMQARSRAAEANSGVEIGYTIPKEGAQMFFDNLAIPSDAKNVAEAYELINYLYRPE 302 WSGDI QA+SRAAEA +GVEIGYTIPKEGAQMFFDN AIP+DAKNVAEA+ELINYLYRP+ Sbjct: 244 WSGDIKQAQSRAAEAKNGVEIGYTIPKEGAQMFFDNFAIPADAKNVAEAHELINYLYRPD 303 Query: 303 VAAKNSNFLSYANGNLASQKLIDPKIFTDKNIYPDEAMQKKLFVITARDPATQRIINRLW 362 VAAKNS++LSYANGNLASQKLIDP+I DK IYPD+A K+LFVITARDPATQRIINRLW Sbjct: 304 VAAKNSDYLSYANGNLASQKLIDPRIMNDKTIYPDDATLKRLFVITARDPATQRIINRLW 363 Query: 363 TRVKTGK 369 TRVKTG+ Sbjct: 364 TRVKTGR 370 >ref|YP_780939.1| extracellular solute-binding protein [Rhodopseudomonas palustris BisA53] gb|ABJ05959.1| extracellular solute-binding protein, family 1 [Rhodopseudomonas palustris BisA53] Length = 370 Score = 611 bits (1575), Expect = e-173, Method: Compositional matrix adjust. Identities = 288/363 (79%), Positives = 322/363 (88%) Query: 7 RLVSFVGAVATVLLLSASADAEERTVNFYNWSNYMAPEVLEDFTKETGIKVVYDTFDANE 66 RL + +V L S+ A A++RTVNFYNWS+YMAP VLEDF+KETGIKVVYDTFDANE Sbjct: 8 RLALCAALIGSVALASSPAQAQQRTVNFYNWSSYMAPGVLEDFSKETGIKVVYDTFDANE 67 Query: 67 TLETRLLAGKSGYDVVVPTGYFLQRQITAKVFLKLDKSKLPNLANAWPVVTSQLATYDPG 126 TLETRLLAGKSGYDVVVPT YFLQRQI A VF KLDK+KLPNLA+AW VVT +LA YDPG Sbjct: 68 TLETRLLAGKSGYDVVVPTAYFLQRQIAANVFQKLDKTKLPNLAHAWEVVTKRLAVYDPG 127 Query: 127 NNYGANYMWGTTGIGYNVKIAEKILGPDAKIDSWDMVFKPENLAKFKDCGIHMLDSADDI 186 N Y ANYMWGTTGIGYNVK + ILGP A +DSWD+VFKPEN++KFKDCGIHMLDSADDI Sbjct: 128 NQYAANYMWGTTGIGYNVKTIQSILGPGAVVDSWDIVFKPENISKFKDCGIHMLDSADDI 187 Query: 187 LPAALSYLGLDPNSTKQADLEKAADLVIRIRPYVRKFHSSEYLSALASGEICFVVGWSGD 246 LPAAL+YLGLDPNSTK AD+EKAADLV IRP VRKFHSSEYL++LA+GEIC VVGWSGD Sbjct: 188 LPAALNYLGLDPNSTKPADIEKAADLVAAIRPNVRKFHSSEYLNSLATGEICLVVGWSGD 247 Query: 247 IMQARSRAAEANSGVEIGYTIPKEGAQMFFDNLAIPSDAKNVAEAYELINYLYRPEVAAK 306 IMQARSRAAEA GVEIGY IPK+GAQMFFDNLAIP+DA NVAEA+ELINYLYRPEVAAK Sbjct: 248 IMQARSRAAEAKGGVEIGYAIPKQGAQMFFDNLAIPADANNVAEAHELINYLYRPEVAAK 307 Query: 307 NSNFLSYANGNLASQKLIDPKIFTDKNIYPDEAMQKKLFVITARDPATQRIINRLWTRVK 366 NS+FLSYANGNLASQ+LI+PK+ DK IYPDEA +++LF+ITARD TQR+INRLWTR+K Sbjct: 308 NSDFLSYANGNLASQRLINPKVIHDKMIYPDEATERRLFIITARDLPTQRVINRLWTRIK 367 Query: 367 TGK 369 TG+ Sbjct: 368 TGR 370 >ref|YP_001206628.1| putrescine ABC transporter periplasmic binding protein [Bradyrhizobium sp. ORS 278] emb|CAL78411.1| putrescine ABC transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] Length = 366 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 287/342 (83%), Positives = 313/342 (91%) Query: 28 EERTVNFYNWSNYMAPEVLEDFTKETGIKVVYDTFDANETLETRLLAGKSGYDVVVPTGY 87 EER VNFYNWSNYMAP VLEDFTKETGIKVVYDTFDANETLETRLLAGKSGYDVVVPT Y Sbjct: 25 EERVVNFYNWSNYMAPGVLEDFTKETGIKVVYDTFDANETLETRLLAGKSGYDVVVPTAY 84 Query: 88 FLQRQITAKVFLKLDKSKLPNLANAWPVVTSQLATYDPGNNYGANYMWGTTGIGYNVKIA 147 FLQRQI AK+F LDK+KLPNLANAW VVT++LATYDPGN + ANYMWGTTGIGYNVK Sbjct: 85 FLQRQIKAKIFQPLDKAKLPNLANAWTVVTARLATYDPGNQFAANYMWGTTGIGYNVKAI 144 Query: 148 EKILGPDAKIDSWDMVFKPENLAKFKDCGIHMLDSADDILPAALSYLGLDPNSTKQADLE 207 EKILG +IDSWDMVFKPENLA+FKDCG+HMLDSADDI PAAL+YLGLDPNSTKQADLE Sbjct: 145 EKILGAGVRIDSWDMVFKPENLARFKDCGVHMLDSADDIFPAALNYLGLDPNSTKQADLE 204 Query: 208 KAADLVIRIRPYVRKFHSSEYLSALASGEICFVVGWSGDIMQARSRAAEANSGVEIGYTI 267 KAA++V ++ P+VRKFHSSEYLSALA+GEIC VVGWSGDIMQARSRA EA +G+EIGY I Sbjct: 205 KAAEVVGKVAPFVRKFHSSEYLSALATGEICLVVGWSGDIMQARSRAEEAKNGIEIGYAI 264 Query: 268 PKEGAQMFFDNLAIPSDAKNVAEAYELINYLYRPEVAAKNSNFLSYANGNLASQKLIDPK 327 PKEGAQMFFDN AIP+DA++V EAY LINYLYRPEVAAKNS+FLSYANGNLASQKLIDPK Sbjct: 265 PKEGAQMFFDNFAIPADAQHVPEAYALINYLYRPEVAAKNSDFLSYANGNLASQKLIDPK 324 Query: 328 IFTDKNIYPDEAMQKKLFVITARDPATQRIINRLWTRVKTGK 369 I DKNIYPD+A KKLFVI AR+PATQR+INRLWT+VKTG+ Sbjct: 325 ILGDKNIYPDDATLKKLFVIAAREPATQRLINRLWTKVKTGR 366