BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0165.p         (257 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_576777.1| MotA/TolQ/ExbB proton channel [Nitrobacter hamb...   495   e-138
ref|YP_317850.1| MotA/TolQ/ExbB proton channel [Nitrobacter wino...   492   e-137
ref|NP_770440.1| chemotaxis protein [Bradyrhizobium japonicum US...   492   e-137
ref|ZP_01046395.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp...   492   e-137
ref|YP_001206634.1| putative chemotaxis protein MotA [Bradyrhizo...   489   e-136

>ref|YP_576777.1| MotA/TolQ/ExbB proton channel [Nitrobacter hamburgensis X14]
 gb|ABE62317.1| MotA/TolQ/ExbB proton channel [Nitrobacter hamburgensis X14]
          Length = 257

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 243/257 (94%), Positives = 253/257 (98%)

Query: 1   MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60
           MDIMTGAGL  G+IV+AVM+FMGGDLHMF+SEHAMIIIFGG+ AATMIRFPLG +LHGLP
Sbjct: 1   MDIMTGAGLAFGMIVVAVMVFMGGDLHMFVSEHAMIIIFGGATAATMIRFPLGAILHGLP 60

Query: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120
           LGAKFAFTMSRL+ARDLVDELARIAEIARKQGPVGLEKVET+EPFLAKGIR+VADGYDLE
Sbjct: 61  LGAKFAFTMSRLTARDLVDELARIAEIARKQGPVGLEKVETNEPFLAKGIRFVADGYDLE 120

Query: 121 FIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180
           FIRDN+ERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180

Query: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240
           ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240

Query: 241 AYLPEKHRQEEGEPVPA 257
           AYLPEKHRQEEGEPVPA
Sbjct: 241 AYLPEKHRQEEGEPVPA 257


>ref|YP_317850.1| MotA/TolQ/ExbB proton channel [Nitrobacter winogradskyi Nb-255]
 gb|ABA04498.1| MotA/TolQ/ExbB proton channel [Nitrobacter winogradskyi Nb-255]
          Length = 257

 Score =  492 bits (1267), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/257 (94%), Positives = 252/257 (98%)

Query: 1   MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60
           MDIMTGAGL  G+IVIA+M+FMGGDLHMF+SEHAMIIIFGGSIAATMIRFPLG +LHGLP
Sbjct: 1   MDIMTGAGLAFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGSIAATMIRFPLGAILHGLP 60

Query: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120
           LGAK+AFTMSRLSARDLVDELARIAEI+RKQGPVGLEKVET EPFLAKG+R+VADGYDLE
Sbjct: 61  LGAKYAFTMSRLSARDLVDELARIAEISRKQGPVGLEKVETTEPFLAKGVRFVADGYDLE 120

Query: 121 FIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180
           FIRDN+ERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180

Query: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240
           ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240

Query: 241 AYLPEKHRQEEGEPVPA 257
           AYLPEKHR EEGEPVPA
Sbjct: 241 AYLPEKHRHEEGEPVPA 257


>ref|NP_770440.1| chemotaxis protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49065.1| pomA [Bradyrhizobium japonicum USDA 110]
          Length = 257

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/257 (94%), Positives = 248/257 (96%)

Query: 1   MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60
           MDIMTG GL AGIIVIA M+FMGGDLHMFISEHAMIIIFGGSI+ATMIRFPL  +LHGLP
Sbjct: 1   MDIMTGVGLTAGIIVIAAMIFMGGDLHMFISEHAMIIIFGGSISATMIRFPLSALLHGLP 60

Query: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120
           LGAKFAFTMSRLSA DLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDL+
Sbjct: 61  LGAKFAFTMSRLSAHDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLD 120

Query: 121 FIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180
           FIRDN+ERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180

Query: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240
           ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSP LVREMLL
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPTLVREMLL 240

Query: 241 AYLPEKHRQEEGEPVPA 257
           AYLPEKHR  EGEPVPA
Sbjct: 241 AYLPEKHRHAEGEPVPA 257


>ref|ZP_01046395.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp. Nb-311A]
 gb|EAQ35709.1| MotA/TolQ/ExbB proton channel [Nitrobacter sp. Nb-311A]
          Length = 257

 Score =  492 bits (1266), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 242/257 (94%), Positives = 252/257 (98%)

Query: 1   MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60
           MDIMTGAGL  G+IVIA+M+FMGGDLHMF+SEHAMIIIFGG+ AATMIRFPLG +LHGLP
Sbjct: 1   MDIMTGAGLTFGMIVIAMMVFMGGDLHMFVSEHAMIIIFGGATAATMIRFPLGAILHGLP 60

Query: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120
           LGAK+AFTMSRLSARDLVDELARIAEIARKQGPVGLEKVET+EPFLAKGIR+VADGYDLE
Sbjct: 61  LGAKYAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETNEPFLAKGIRFVADGYDLE 120

Query: 121 FIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180
           FIRDN+ERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180

Query: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240
           ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240

Query: 241 AYLPEKHRQEEGEPVPA 257
           AYLPEKHR EEGEPVPA
Sbjct: 241 AYLPEKHRHEEGEPVPA 257


>ref|YP_001206634.1| putative chemotaxis protein MotA [Bradyrhizobium sp. ORS 278]
 emb|CAL78417.1| putative chemotaxis protein MotA (Flagellar motor component)
           [Bradyrhizobium sp. ORS 278]
          Length = 257

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 243/257 (94%), Positives = 248/257 (96%)

Query: 1   MDIMTGAGLLAGIIVIAVMMFMGGDLHMFISEHAMIIIFGGSIAATMIRFPLGVMLHGLP 60
           MDIMT  GL+AG IVIA MM +GGD+ MFISEHA+IIIFGGSIAATMIRFPLG MLHGLP
Sbjct: 1   MDIMTSVGLVAGGIVIATMMLLGGDVEMFISEHAVIIIFGGSIAATMIRFPLGAMLHGLP 60

Query: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120
           LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE
Sbjct: 61  LGAKFAFTMSRLSARDLVDELARIAEIARKQGPVGLEKVETDEPFLAKGIRYVADGYDLE 120

Query: 121 FIRDNMERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180
           FIRDN+ERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM
Sbjct: 121 FIRDNLERDRDNFLMHLDEGSKIYRAIGDCAPAFGMIGTLIGMVQMFANMTDPSKLGPFM 180

Query: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240
           ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL
Sbjct: 181 ATALLATLYGALVANLFCLPIADKLHGKLLDEETNRTLIIDGILMIRDSKSPALVREMLL 240

Query: 241 AYLPEKHRQEEGEPVPA 257
           AYLPEKHR  EGEPVPA
Sbjct: 241 AYLPEKHRHAEGEPVPA 257