BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0159.p (436 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773452.1| dehydrogenase [Bradyrhizobium japonicum USDA 11... 746 0.0 ref|YP_002501484.1| FAD dependent oxidoreductase [Methylobacteri... 608 e-172 ref|YP_002945559.1| D-amino-acid dehydrogenase [Variovorax parad... 506 e-141 ref|YP_995591.1| D-amino-acid dehydrogenase [Verminephrobacter e... 503 e-140 ref|YP_004156530.1| D-amino-acid dehydrogenase [Variovorax parad... 493 e-137 >ref|NP_773452.1| dehydrogenase [Bradyrhizobium japonicum USDA 110] dbj|BAC52077.1| bll6812 [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 746 bits (1926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/419 (87%), Positives = 394/419 (94%) Query: 18 ESRHVAIIGAGAVGVISAIEALRDGHSVTLIDPGEPGGTQAASYGNAGWLSSHSVIPPAE 77 E RHVAIIGAGAVGVISAIEALR+GH VTLIDPGEPGG QAASYGNAGWLSSHSVIPPAE Sbjct: 3 EGRHVAIIGAGAVGVISAIEALREGHRVTLIDPGEPGGEQAASYGNAGWLSSHSVIPPAE 62 Query: 78 PGTWKKVPGYLMDPLGPLAIRWSYLPKALPWLVKYLLSSRTEAQVGATARAMRDLLKDAP 137 PG WKKVPGYLMDPLGPLAIRWSYLPKALPWL+KYLLS TEA+V TA A+RDLLKDAP Sbjct: 63 PGIWKKVPGYLMDPLGPLAIRWSYLPKALPWLIKYLLSGWTEARVEKTAFALRDLLKDAP 122 Query: 138 LLHRQLAEEAGVGELIERRGVMHVFPSRVPFDRDLGWRIRKRVGIEWLELDEDEMCQREP 197 LLHR+LAEEAGV ELIER GVMH FPSR FD DLGWR+RK+VG+ WLEL+ DEM QREP Sbjct: 123 LLHRKLAEEAGVPELIERNGVMHAFPSRGNFDNDLGWRLRKKVGVAWLELNADEMRQREP 182 Query: 198 DLHPRYKFGVVVEEAGRCRDPGAYVAALAAHAIANGAERVAAKATGLRLAGNKLVAVVTE 257 DLHPRY FGVVVEEAGRCRDPGAYVAALA HA+A+GA+ V AKATGL+L+GNKLVAVVTE Sbjct: 183 DLHPRYSFGVVVEEAGRCRDPGAYVAALANHALASGAKLVRAKATGLKLSGNKLVAVVTE 242 Query: 258 SGEIACDAAVVAAGARSRQLSASIGDPLPLETERGYHVMIENPESGPRNSMMASDAKMVV 317 +GEIACDAAVVAAGARS+QL+AS+GDPLPLETERGYHVMIENPE+GPR+S+MASDAKMVV Sbjct: 243 TGEIACDAAVVAAGARSKQLTASVGDPLPLETERGYHVMIENPETGPRSSIMASDAKMVV 302 Query: 318 NWTDKGLRAAGTVEIAGLDAAPNWKRAEILREHLFSMFPKLPRDIPPSRIKTWFGHRPSM 377 NWT+KGLRAAGTVEIAGL+AAPNWKRAEILR+HLFSMFPKLPRDIP SRIKTWFGHRPSM Sbjct: 303 NWTNKGLRAAGTVEIAGLEAAPNWKRAEILRDHLFSMFPKLPRDIPASRIKTWFGHRPSM 362 Query: 378 PDGRPCIGYARATRDVVYAFGHGHVGLVGSARTGRLVAQLLSGKAPEIPLAPFAPSRFL 436 PDG PCIG+ARA+RD+VYAFGHGHVGLVGSARTGRLVAQLLSGK PEIPLAPF+P+RFL Sbjct: 363 PDGLPCIGHARASRDIVYAFGHGHVGLVGSARTGRLVAQLLSGKQPEIPLAPFSPTRFL 421 >ref|YP_002501484.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060] gb|ACL61181.1| FAD dependent oxidoreductase [Methylobacterium nodulans ORS 2060] Length = 424 Score = 608 bits (1567), Expect = e-172, Method: Compositional matrix adjust. Identities = 293/424 (69%), Positives = 340/424 (80%), Gaps = 1/424 (0%) Query: 14 MPKQESRHVAIIGAGAVGVISAIEALRDGHSVTLIDPGEPGGTQAASYGNAGWLSSHSVI 73 MP RHV IIG+GAVG +SAIE LR GH VT++DPG+PGG QA+SYGNAGWLSSHSVI Sbjct: 1 MPATTGRHVVIIGSGAVGTVSAIECLRAGHRVTVVDPGQPGGEQASSYGNAGWLSSHSVI 60 Query: 74 PPAEPGTWKKVPGYLMDPLGPLAIRWSYLPKALPWLVKYLLSSRTEAQVGATARAMRDLL 133 PPAEPG WKKVP +L+DPLGPL+IRW+YLPK LPWL+++LL++RT AQ+ TA+AMR LL Sbjct: 61 PPAEPGMWKKVPSFLLDPLGPLSIRWAYLPKVLPWLIRFLLAARTSAQIEHTAQAMRTLL 120 Query: 134 KDAPLLHRQLAEEAGVGELIERRGVMHVFPSRVPFDRDL-GWRIRKRVGIEWLELDEDEM 192 DAP LH LA EAGV +LIERRGV+HV+P R F+ D W IR++VG+EWLEL +E+ Sbjct: 121 VDAPKLHASLAAEAGVPQLIERRGVLHVYPDRTAFEGDARSWAIRRKVGVEWLELSAEEL 180 Query: 193 CQREPDLHPRYKFGVVVEEAGRCRDPGAYVAALAAHAIANGAERVAAKATGLRLAGNKLV 252 QREP+LHPRY FG+VVEEAG CRDPG Y+AAL+ A GA V +ATG RL G++L Sbjct: 181 RQREPNLHPRYTFGLVVEEAGHCRDPGNYIAALSKLACERGATYVTTRATGFRLEGSRLT 240 Query: 253 AVVTESGEIACDAAVVAAGARSRQLSASIGDPLPLETERGYHVMIENPESGPRNSMMASD 312 AV TE GEIACD AVVAAGARS+ L+AS+GD LPLE+ERGYHVMI + + GPR MMASD Sbjct: 241 AVTTEQGEIACDCAVVAAGARSKTLAASLGDALPLESERGYHVMIPDAKVGPRTPMMASD 300 Query: 313 AKMVVNWTDKGLRAAGTVEIAGLDAAPNWKRAEILREHLFSMFPKLPRDIPPSRIKTWFG 372 AKM+ N+ + GLRAAG VE AGL A PNWKRAEILR HL SMFP L +P R++ W G Sbjct: 301 AKMIANFMNGGLRAAGQVEFAGLAAVPNWKRAEILRNHLISMFPGLAGTVPADRLRVWLG 360 Query: 373 HRPSMPDGRPCIGYARATRDVVYAFGHGHVGLVGSARTGRLVAQLLSGKAPEIPLAPFAP 432 HRPSMPDGRPCIG AR T DV+YAFGHGHV LVGSARTGRLVAQL+S APEIPLAPF P Sbjct: 361 HRPSMPDGRPCIGPARKTSDVIYAFGHGHVSLVGSARTGRLVAQLVSCSAPEIPLAPFDP 420 Query: 433 SRFL 436 RFL Sbjct: 421 RRFL 424 >ref|YP_002945559.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] gb|ACS20293.1| D-amino-acid dehydrogenase [Variovorax paradoxus S110] Length = 432 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 262/419 (62%), Positives = 318/419 (75%), Gaps = 2/419 (0%) Query: 19 SRHVAIIGAGAVGVISAIEALRDGHSVTLIDPGEPGGTQAASYGNAGWLSSHSVIPPAEP 78 +RHV +IGAGAVG +AIEALR G VT+++PGE GG QA SYGNAGWLSSHSV+PPA P Sbjct: 13 ARHVVVIGAGAVGSATAIEALRAGLRVTVVEPGEAGGPQATSYGNAGWLSSHSVVPPALP 72 Query: 79 GTWKKVPGYLMDPLGPLAIRWSYLPKALPWLVKYLLSSRTEAQVGATARAMRDLLKDAPL 138 G W+KVPG+L DPLGPLA+RW YLP+ALPWL++YL S TEA+V TA A+R LL DAP Sbjct: 73 GAWRKVPGWLADPLGPLALRWRYLPQALPWLLRYLASGWTEARVQRTADALRTLLADAPA 132 Query: 139 LHRQLAEEAGVGELIERRGVMHVFPSRVPFDRD-LGWRIRKRVGIEWLELDEDEMCQREP 197 LH +LA EAGV +LIERRG++H + SR F+ D GWR+R+R G+ W E E+ +REP Sbjct: 133 LHARLAAEAGVPQLIERRGLLHAYRSREEFEGDAFGWRVRRRTGVHWEEWPVAELHRREP 192 Query: 198 DLHPRYKFGVVVEEAGRCRDPGAYVAALAAHAIANGAERVAAKATGLRLAGNKLVAVVTE 257 DL RY G+ V EAG CR+PGAYVAALA HA GA+RVAA ATG R+ G +L AV T+ Sbjct: 193 DLDARYTLGIFVPEAGHCRNPGAYVAALARHAQEAGAQRVAASATGFRIEGGRLRAVRTD 252 Query: 258 SGEIACDAAVVAAGARSRQLSASIGDPLPLETERGYHVMIENPESGPRNSMMASDAKMVV 317 +GEIACDAA + AGARS L+A+ G P+PLE+ERGYHV++E +GPR M +D K++ Sbjct: 253 AGEIACDAAAICAGARSGPLAAAAGSPVPLESERGYHVVVEGASAGPRTPTMVADGKLIA 312 Query: 318 NWTDKGLRAAGTVEIAGLDAAPNWKRAEILREHLFSMFPKLPRDIPPS-RIKTWFGHRPS 376 +W D GLRAAG VEI GLDA P+W+RAEIL HL SMFP L + P + +K W GHRPS Sbjct: 313 HWMDGGLRAAGQVEIGGLDAPPDWRRAEILHRHLLSMFPALAAEAPQAVAVKHWLGHRPS 372 Query: 377 MPDGRPCIGYARATRDVVYAFGHGHVGLVGSARTGRLVAQLLSGKAPEIPLAPFAPSRF 435 +PDG PCIG + A+ D+V AFGHGHVGL GSARTGRL AQLL+G PE LAPF P+RF Sbjct: 373 LPDGLPCIGASAASADIVLAFGHGHVGLCGSARTGRLAAQLLAGSTPETALAPFDPARF 431 >ref|YP_995591.1| D-amino-acid dehydrogenase [Verminephrobacter eiseniae EF01-2] gb|ABM56573.1| D-amino-acid dehydrogenase [Verminephrobacter eiseniae EF01-2] Length = 438 Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust. Identities = 264/431 (61%), Positives = 311/431 (72%), Gaps = 7/431 (1%) Query: 12 EIMPKQESRHVAIIGAGAVGVISAIEALRDGHSVTLIDPGEPGGTQAASYGNAGWLSSHS 71 + P +RHV IIGAG VG +SAIEALR G VTL++ G GG QAASYGNAGWLSSHS Sbjct: 2 HLRPHAMTRHVVIIGAGIVGAVSAIEALRAGLRVTLVEAGPAGGEQAASYGNAGWLSSHS 61 Query: 72 VIPPAEPGTWKKVPGYLMDPLGPLAIRWSYLPKALPWLVKYLLSSRTEAQVGATARAMRD 131 VI PAEPG WKKVPG+++DPLGPLAIR YLP+ PWL++YL S TEA+V TA A+R Sbjct: 62 VIAPAEPGLWKKVPGFVLDPLGPLAIRMRYLPQVAPWLMRYLASGWTEARVEKTAHALRA 121 Query: 132 LLKDAPLLHRQLAEEAGVGELIERRGVMHVFPSRVPFDRD-LGWRIRKRVGIEWLELDED 190 LL DAP LH LA AGV LIERRG++H +PSR F+ D L WR+R + G+ W EL D Sbjct: 122 LLVDAPALHHDLASAAGVAALIERRGLLHAYPSRSDFEADGLAWRVRHKTGVRWQELQAD 181 Query: 191 EMCQREPDLHPRYKFGVVVEEAGRCRDPGAYVAALAAHAIANGAERVAAKATGLRLAGNK 250 + EP LHPRY+FGV V EAG CRDPGAYV AL AHA A GA + A+ATG R + Sbjct: 182 ALHALEPALHPRYQFGVWVGEAGHCRDPGAYVGALVAHACAQGAASICAQATGFRFESGR 241 Query: 251 LVAVVTESGEIACDAAVVAAGARSRQLSASIGDPLPLETERGYHVMIENPE------SGP 304 L AV +I CDAAV+AAGA SR L+A GD LPLETERGYHV+++ P+ P Sbjct: 242 LRAVRAAGADIGCDAAVIAAGAHSRALAALAGDLLPLETERGYHVIVDAPQMLPERPQLP 301 Query: 305 RNSMMASDAKMVVNWTDKGLRAAGTVEIAGLDAAPNWKRAEILREHLFSMFPKLPRDIPP 364 + +M SD K ++GLR AG VEIAGL AAPNW+RAEILR+HL +FP LP +P Sbjct: 302 QLPVMVSDCKAGATPMERGLRIAGQVEIAGLKAAPNWRRAEILRDHLLRIFPGLPAPLPA 361 Query: 365 SRIKTWFGHRPSMPDGRPCIGYARATRDVVYAFGHGHVGLVGSARTGRLVAQLLSGKAPE 424 + + W GHRPSMPDGRPCIGYA A+RDVV+AFGHGH+GL +ARTGRLVAQLLS + PE Sbjct: 362 ASLHYWMGHRPSMPDGRPCIGYASASRDVVHAFGHGHIGLASAARTGRLVAQLLSDRTPE 421 Query: 425 IPLAPFAPSRF 435 I LAPF P RF Sbjct: 422 IDLAPFDPRRF 432 >ref|YP_004156530.1| D-amino-acid dehydrogenase [Variovorax paradoxus EPS] gb|ADU38419.1| D-amino-acid dehydrogenase [Variovorax paradoxus EPS] Length = 438 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 261/419 (62%), Positives = 308/419 (73%), Gaps = 3/419 (0%) Query: 20 RHVAIIGAGAVGVISAIEALRDGHSVTLIDPGEPGGTQAASYGNAGWLSSHSVIPPAEPG 79 RHV +IGAGAVG +AIEALR G VTL++P PGG A SYGNAGWLSSHSV+PPA PG Sbjct: 19 RHVVVIGAGAVGCATAIEALRAGLRVTLLEPEAPGGLHATSYGNAGWLSSHSVVPPALPG 78 Query: 80 TWKKVPGYLMDPLGPLAIRWSYLPKALPWLVKYLLSSRTEAQVGATARAMRDLLKDAPLL 139 W+KVPG+L DPLGPLA+RW YLP+ALPWL++YL S TEA+V TA A+R LL DAP L Sbjct: 79 AWRKVPGWLADPLGPLAVRWRYLPRALPWLLRYLASGWTEARVQRTADALRTLLVDAPAL 138 Query: 140 HRQLAEEAGVGELIERRGVMHVFPSRVPFDRD-LGWRIRKRVGIEWLELDEDEMCQREPD 198 H QLA EAGV ELIERRG++H + SR F+ D LGWR+R RVG++W E DE+ +REPD Sbjct: 139 HAQLAAEAGVSELIERRGLLHAYRSRAEFEDDALGWRVRGRVGVQWDEWSADELRRREPD 198 Query: 199 LHPRYKFGVVVEEAGRCRDPGAYVAALAAHAIANGAERVAAKATGLRLAGNKLVAVVTES 258 L RY G+ V EAG CRDPGAYVAALA HA+ GAERV +ATG R+ G +L AV T Sbjct: 199 LDARYTLGIFVPEAGHCRDPGAYVAALAQHAVNAGAERVFGRATGFRIEGGRLRAVRTND 258 Query: 259 GEIACDAAVVAAGARSRQLSASIGDPLPLETERGYHVMIENPESGPRNSMMASDAKMVVN 318 GEIACDAA + AGA S L+A+ G +PL+TERGYHV+I++ GPR +M +D K++ + Sbjct: 259 GEIACDAAAICAGAYSGPLAAAAGSSVPLDTERGYHVVIDDATVGPRTPVMVADGKLIAH 318 Query: 319 WTDKGLRAAGTVEIAGLDAAPNWKRAEILREHLFSMFPKLPRDI--PPSRIKTWFGHRPS 376 W D GLRAAG VEI GLDA P+W+RAEIL HL SMFP L W G RPS Sbjct: 319 WMDGGLRAAGQVEIGGLDAEPDWRRAEILHRHLLSMFPALATTERGGAKTFNHWLGRRPS 378 Query: 377 MPDGRPCIGYARATRDVVYAFGHGHVGLVGSARTGRLVAQLLSGKAPEIPLAPFAPSRF 435 +PDG PCIG + A+ D+V AFGHGHVGL GSARTGRL AQLL+G PE PLAPF RF Sbjct: 379 LPDGLPCIGPSAASADIVLAFGHGHVGLCGSARTGRLAAQLLAGIEPETPLAPFDLRRF 437