BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0142.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001992696.1| TetR family transcriptional regulator [Rhodo... 321 7e-86 ref|YP_004108468.1| TetR family transcriptional regulator [Rhodo... 319 3e-85 ref|NP_948639.1| TetR family transcriptional regulator [Rhodopse... 310 1e-82 ref|YP_487683.1| TetR family transcriptional regulator [Rhodopse... 309 3e-82 ref|YP_570937.1| regulatory protein TetR [Rhodopseudomonas palus... 306 2e-81 >ref|YP_001992696.1| TetR family transcriptional regulator [Rhodopseudomonas palustris TIE-1] gb|ACF02221.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris TIE-1] Length = 260 Score = 321 bits (823), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 162/264 (61%), Positives = 193/264 (73%), Gaps = 13/264 (4%) Query: 8 SNTESPWLPFESRRRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYF 67 ++ +SPW+PFESRRRARDEKREAVLRTAV LFLEQGYHRATLNEVA+RLNITKPALYNYF Sbjct: 6 ADDQSPWMPFESRRRARDEKREAVLRTAVHLFLEQGYHRATLNEVAERLNITKPALYNYF 65 Query: 68 RGKDEILYECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRFDI 127 R K+EIL+ECW++G E VD+ IA +A G GL KLR L YA M ++G S+VRF+ Sbjct: 66 RSKEEILFECWALGQEQVDEIIAGINASGDEGLGKLRALVRAYAATMATEFGASMVRFNP 125 Query: 128 RDLSEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQP 187 RDLS +N K V+ AKR ID+ FR +IA+GVADGS+KPCDPKL AFAIAGSLNWIGHW+Q Sbjct: 126 RDLSPENEKTVRAAKRGIDQTFRRFIAEGVADGSIKPCDPKLTAFAIAGSLNWIGHWYQR 185 Query: 188 GGELSGRAVAEEFAIRLTEGIAKTATQMTSSHKTTAHKAAVPAAEKADKPPRKGNASREE 247 G LS +AEEFA+RLTEG+A +T+ S+ + VP K P+ G+ Sbjct: 186 DGALSPETIAEEFAMRLTEGLATRSTKKKSTLQ-------VPDGNNNRKRPKGGH----- 233 Query: 248 TSEHHARTAARAAGQSKRARSRLR 271 EHH R A RAA Q RA RLR Sbjct: 234 -HEHHPRPAVRAADQPGRAGHRLR 256 >ref|YP_004108468.1| TetR family transcriptional regulator [Rhodopseudomonas palustris DX-1] gb|ADU43735.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris DX-1] Length = 260 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 162/265 (61%), Positives = 193/265 (72%), Gaps = 13/265 (4%) Query: 7 SSNTESPWLPFESRRRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNY 66 +++ SPW+PFESRRRARDEKREAVLRTAV LFLEQGYHRATLNEVA+RLNITKPALYNY Sbjct: 5 AADDRSPWMPFESRRRARDEKREAVLRTAVHLFLEQGYHRATLNEVAERLNITKPALYNY 64 Query: 67 FRGKDEILYECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRFD 126 FR K+EIL+ECW++G E VDD IA +A G GL KLR L YA M ++G S+VRF+ Sbjct: 65 FRSKEEILFECWALGQEQVDDIIAVINASGDDGLGKLRALVRAYATTMATEFGASMVRFN 124 Query: 127 IRDLSEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQ 186 RDLS +N K V+ AKR ID+ FR +IA+GVADGS+KPCDPKL AFAIAGSLNWIGHW+Q Sbjct: 125 PRDLSPENEKTVRAAKRGIDQTFRRFIAEGVADGSIKPCDPKLTAFAIAGSLNWIGHWYQ 184 Query: 187 PGGELSGRAVAEEFAIRLTEGIAKTATQMTSSHKTTAHKAAVPAAEKADKPPRKGNASRE 246 G LS A+A+EFA+RLTEG+A +T+ S+ + P K P+ G+ Sbjct: 185 RDGALSPEAIADEFAMRLTEGLATRSTKKKSALE-------APDGNNNRKRPKGGH---- 233 Query: 247 ETSEHHARTAARAAGQSKRARSRLR 271 EHH R AARAA Q R RLR Sbjct: 234 --HEHHPRPAARAADQPGRTGHRLR 256 >ref|NP_948639.1| TetR family transcriptional regulator [Rhodopseudomonas palustris CGA009] emb|CAE28741.1| possible transcriptional regulator, TetR family [Rhodopseudomonas palustris CGA009] Length = 248 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 159/257 (61%), Positives = 188/257 (73%), Gaps = 13/257 (5%) Query: 15 LPFESRRRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNYFRGKDEIL 74 +PFESRRRARDEKREAVLRTAV LFLEQGYHRATLNEVA+RLNITKPALYNYFR K+EIL Sbjct: 1 MPFESRRRARDEKREAVLRTAVHLFLEQGYHRATLNEVAERLNITKPALYNYFRSKEEIL 60 Query: 75 YECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRFDIRDLSEDN 134 +ECW++G E VD+ IA +A G GL KLR L YA M ++G S+VRF+ RDLS +N Sbjct: 61 FECWALGQEQVDEIIAGINASGDDGLGKLRALVRAYAATMATEFGASMVRFNPRDLSPEN 120 Query: 135 RKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQPGGELSGR 194 K V+ AKR ID+ FR +IA+GV DGS+KPCDPKL AFAIAGSLNWIGHW+Q G LS Sbjct: 121 EKTVRAAKRGIDQTFRRFIAEGVTDGSIKPCDPKLTAFAIAGSLNWIGHWYQRDGALSPE 180 Query: 195 AVAEEFAIRLTEGIAKTATQMTSSHKTTAHKAAVPAAEKADKPPRKGNASREETSEHHAR 254 A+A+EFA+RLTEG+A +T+ S+ + VP K P+ G+ EHH R Sbjct: 181 AIADEFAMRLTEGLAIRSTKKKSTLQ-------VPDGNNNRKRPKGGH------HEHHPR 227 Query: 255 TAARAAGQSKRARSRLR 271 AARAA Q RA RLR Sbjct: 228 PAARAADQPGRAGHRLR 244 >ref|YP_487683.1| TetR family transcriptional regulator [Rhodopseudomonas palustris HaA2] gb|ABD08772.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris HaA2] Length = 244 Score = 309 bits (792), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 150/225 (66%), Positives = 175/225 (77%), Gaps = 2/225 (0%) Query: 1 MDASPPSSNTESPWLPFESRRRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITK 60 MD P +N +SPW+PFESRRRARDEKREAVLRTAV LFLEQGYHRATLNEVA+RLNITK Sbjct: 20 MDGRP--ANDQSPWMPFESRRRARDEKREAVLRTAVQLFLEQGYHRATLNEVAERLNITK 77 Query: 61 PALYNYFRGKDEILYECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGK 120 PALYNYFR KDEIL+ECW++G E VD+ IA + G +GL KLR L YA M D+G Sbjct: 78 PALYNYFRSKDEILFECWALGQEQVDEFIAVINRSGQNGLGKLRALVRAYAGTMATDFGA 137 Query: 121 SLVRFDIRDLSEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNW 180 SLVRFD RDL N + V+ AKR IDR FR YIA+G+AD S+KPCDPKLAAFAIAGSLNW Sbjct: 138 SLVRFDPRDLKPHNAQTVRDAKRSIDRTFRRYIAEGIADKSIKPCDPKLAAFAIAGSLNW 197 Query: 181 IGHWFQPGGELSGRAVAEEFAIRLTEGIAKTATQMTSSHKTTAHK 225 IGHW+Q GG L+ A+A+EFA+RLTEG+A + + + TA K Sbjct: 198 IGHWYQRGGPLTPDAIADEFAVRLTEGLAAPSIKKSVVKAPTATK 242 >ref|YP_570937.1| regulatory protein TetR [Rhodopseudomonas palustris BisB5] gb|ABE41036.1| transcriptional regulator, TetR family [Rhodopseudomonas palustris BisB5] Length = 252 Score = 306 bits (784), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/223 (65%), Positives = 174/223 (78%) Query: 7 SSNTESPWLPFESRRRARDEKREAVLRTAVALFLEQGYHRATLNEVAKRLNITKPALYNY 66 ++N +SPW+PFE+RRRARDEKREAVLR AV +FLEQGYHRATLNEVA+RLNITKPALYNY Sbjct: 24 TANDQSPWMPFENRRRARDEKREAVLRMAVQVFLEQGYHRATLNEVAERLNITKPALYNY 83 Query: 67 FRGKDEILYECWSIGNELVDDCIAETSAGGGSGLDKLRKLTVRYAELMTADYGKSLVRFD 126 FR KDEIL+ECW++G E VDD IA + SGL KLR L YAE M D+G SLVRFD Sbjct: 84 FRSKDEILFECWALGQEQVDDLIAVINRSRQSGLGKLRALVHAYAETMATDFGASLVRFD 143 Query: 127 IRDLSEDNRKIVQTAKRRIDRAFRDYIAQGVADGSVKPCDPKLAAFAIAGSLNWIGHWFQ 186 RDL N + V+ AKR ID FR YIA+G+ADGS+KPCDPKLAAFAIAGSLNWIGHW+Q Sbjct: 144 PRDLKPHNAEKVRAAKRGIDLTFRRYIAEGIADGSIKPCDPKLAAFAIAGSLNWIGHWYQ 203 Query: 187 PGGELSGRAVAEEFAIRLTEGIAKTATQMTSSHKTTAHKAAVP 229 GG L+ A+A+EFAIRLT+G+A+ + + S+ A + P Sbjct: 204 RGGSLTPDAIADEFAIRLTDGLARRSVKKASAEAAPAPRTRKP 246