BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0141.p (324 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_487684.1| AMP-dependent synthetase and ligase [Rhodopseud... 319 3e-85 ref|NP_948638.1| putative long-chain-fatty-acid CoA ligase [Rhod... 311 1e-82 ref|YP_570938.1| AMP-dependent synthetase and ligase [Rhodopseud... 308 1e-81 ref|YP_004108469.1| AMP-dependent synthetase and ligase [Rhodops... 299 5e-79 ref|YP_001992695.1| AMP-dependent synthetase and ligase [Rhodops... 297 2e-78 >ref|YP_487684.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] gb|ABD08773.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 518 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/204 (75%), Positives = 177/204 (86%), Gaps = 3/204 (1%) Query: 1 VIVPLNIRWSPIENEDALRDCRATILFVDKAFAPVGAALAGAIPGLKLVYADEGETPAGM 60 VIVPLNIRWS +ENEDALRDCRA L VDKAFA GA LA AIPGL +V+AD+G+ PAGM Sbjct: 77 VIVPLNIRWSALENEDALRDCRAVALVVDKAFAATGATLAQAIPGLAMVFADDGDVPAGM 136 Query: 61 ENYETLIARSAPMADAMRSRDDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLWP 120 ++YE +IA +AP+ DAMR +DLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGL+P Sbjct: 137 KSYEDVIATNAPIPDAMRKAEDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLFP 196 Query: 121 SSTIYLHAAPMFHLANGAAMYSVLLSGGSNVVIQGFTPDGVAAAVQKERITDVLLVPTMI 180 S+++YLHAAPMFHLANGAAMYS+LLSGGSNV++ FTP+GV AA+Q +R+TDVLLVPTMI Sbjct: 197 STSVYLHAAPMFHLANGAAMYSLLLSGGSNVMVPSFTPEGVMAAMQNDRVTDVLLVPTMI 256 Query: 181 QMFVDHPTLGAV---ALKNGRYGA 201 QMFVDHP L + +LKN YGA Sbjct: 257 QMFVDHPALKSYDLSSLKNIIYGA 280 >ref|NP_948638.1| putative long-chain-fatty-acid CoA ligase [Rhodopseudomonas palustris CGA009] emb|CAE28740.1| putative long-chain-fatty-acid CoA ligase [Rhodopseudomonas palustris CGA009] Length = 518 Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 149/204 (73%), Positives = 171/204 (83%), Gaps = 3/204 (1%) Query: 1 VIVPLNIRWSPIENEDALRDCRATILFVDKAFAPVGAALAGAIPGLKLVYADEGETPAGM 60 VIVPLNIRWS +ENEDAL+DCRA L VDKAFA G ALA A+P + L+YAD+G+ P GM Sbjct: 77 VIVPLNIRWSALENEDALKDCRAVALVVDKAFAATGGALAQAMPSMALIYADDGDVPPGM 136 Query: 61 ENYETLIARSAPMADAMRSRDDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLWP 120 ++YE LIA AP+ DAMR +DLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGL+P Sbjct: 137 QSYEDLIATHAPIPDAMRKAEDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLFP 196 Query: 121 SSTIYLHAAPMFHLANGAAMYSVLLSGGSNVVIQGFTPDGVAAAVQKERITDVLLVPTMI 180 +++YLHAAPMFHLANGAAMYS+LLSGGSNV+I FTP+GV A+Q +R+TDVLLVPTMI Sbjct: 197 GTSVYLHAAPMFHLANGAAMYSLLLSGGSNVMIPSFTPEGVMQAMQNDRVTDVLLVPTMI 256 Query: 181 QMFVDHPTLGAV---ALKNGRYGA 201 QMFVDHP L +LKN YGA Sbjct: 257 QMFVDHPALKNYDLSSLKNIVYGA 280 >ref|YP_570938.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] gb|ABE41037.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris BisB5] Length = 518 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 153/204 (75%), Positives = 171/204 (83%), Gaps = 3/204 (1%) Query: 1 VIVPLNIRWSPIENEDALRDCRATILFVDKAFAPVGAALAGAIPGLKLVYADEGETPAGM 60 VIVPLNIRWS +ENEDALRDCRA L VDK FA GAA+A AIPGL L+YAD+G+ PAGM Sbjct: 77 VIVPLNIRWSVLENEDALRDCRAVTLVVDKTFAATGAAIAQAIPGLALIYADDGDLPAGM 136 Query: 61 ENYETLIARSAPMADAMRSRDDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLWP 120 + YE LIA S P+ DAMR DDLAGIFYTGGTTGRSKGVMLSH NLMANALNALGEGL+P Sbjct: 137 QGYEDLIASSEPIPDAMRKGDDLAGIFYTGGTTGRSKGVMLSHTNLMANALNALGEGLFP 196 Query: 121 SSTIYLHAAPMFHLANGAAMYSVLLSGGSNVVIQGFTPDGVAAAVQKERITDVLLVPTMI 180 +++YLHAAPMFHLANGAAMYS+LLSGGSNV++ FTP+GV A +Q ER+TDVLLVPTMI Sbjct: 197 GTSVYLHAAPMFHLANGAAMYSLLLSGGSNVMVPAFTPEGVMATIQNERVTDVLLVPTMI 256 Query: 181 QMFVDHPTLGAV---ALKNGRYGA 201 QMFVDHP L +LKN YGA Sbjct: 257 QMFVDHPALKTYDLSSLKNITYGA 280 >ref|YP_004108469.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU43736.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 518 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 152/204 (74%), Positives = 173/204 (84%), Gaps = 3/204 (1%) Query: 1 VIVPLNIRWSPIENEDALRDCRATILFVDKAFAPVGAALAGAIPGLKLVYADEGETPAGM 60 VIVPLNIRWS +ENEDALRDCRA L VDKAFA GAALA AIP + ++YAD+G+ PAGM Sbjct: 77 VIVPLNIRWSALENEDALRDCRAVALVVDKAFAATGAALAQAIPSMAMIYADDGDVPAGM 136 Query: 61 ENYETLIARSAPMADAMRSRDDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLWP 120 ++YE LIA AP+ DAMR +DLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGL+P Sbjct: 137 QSYEDLIAAHAPIPDAMRKAEDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLFP 196 Query: 121 SSTIYLHAAPMFHLANGAAMYSVLLSGGSNVVIQGFTPDGVAAAVQKERITDVLLVPTMI 180 +++YLHAAPMFHLANGAAMYS+LLSGGSNV+I FTP+GV A+Q +R+TDVLLVPTMI Sbjct: 197 GTSVYLHAAPMFHLANGAAMYSLLLSGGSNVMIPSFTPEGVMQAMQNDRVTDVLLVPTMI 256 Query: 181 QMFVDHPTLGAV---ALKNGRYGA 201 QMFVDHP L +LKN YGA Sbjct: 257 QMFVDHPALKTYDLSSLKNIVYGA 280 >ref|YP_001992695.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] gb|ACF02220.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris TIE-1] Length = 518 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 151/204 (74%), Positives = 173/204 (84%), Gaps = 3/204 (1%) Query: 1 VIVPLNIRWSPIENEDALRDCRATILFVDKAFAPVGAALAGAIPGLKLVYADEGETPAGM 60 VIVPLNIRWS +ENEDAL+DCRA L VDKAFA GAALA A+P + L+YAD+G+ PAGM Sbjct: 77 VIVPLNIRWSALENEDALKDCRAVALVVDKAFAATGAALAQAMPSMALIYADDGDVPAGM 136 Query: 61 ENYETLIARSAPMADAMRSRDDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLWP 120 ++YE LIA AP+ DAMR +DLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGL+P Sbjct: 137 QSYEDLIATHAPIPDAMRKAEDLAGIFYTGGTTGRSKGVMLSHGNLMANALNALGEGLFP 196 Query: 121 SSTIYLHAAPMFHLANGAAMYSVLLSGGSNVVIQGFTPDGVAAAVQKERITDVLLVPTMI 180 +++YLHAAPMFHLANGAAMYS+LLSGGSNV+I FTP+GV A+Q +R+TDVLLVPTMI Sbjct: 197 GTSVYLHAAPMFHLANGAAMYSLLLSGGSNVMIPSFTPEGVMQAMQNDRVTDVLLVPTMI 256 Query: 181 QMFVDHPTLGAV---ALKNGRYGA 201 QMFVDHP L +LKN YGA Sbjct: 257 QMFVDHPALKNYDLSSLKNIVYGA 280