BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0133.p (391 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773373.1| amidase [Bradyrhizobium japonicum USDA 110] >gi... 614 e-174 ref|YP_001242120.1| amidase [Bradyrhizobium sp. BTAi1] >gi|14640... 600 e-169 ref|YP_001207672.1| amidase [Bradyrhizobium sp. ORS 278] >gi|146... 598 e-169 ref|ZP_02887213.1| Amidase [Burkholderia graminis C4D1M] >gi|170... 582 e-164 ref|YP_533520.1| amidase [Rhodopseudomonas palustris BisB18] >gi... 565 e-159 >ref|NP_773373.1| amidase [Bradyrhizobium japonicum USDA 110] dbj|BAC51998.1| bll6733 [Bradyrhizobium japonicum USDA 110] Length = 466 Score = 614 bits (1583), Expect = e-174, Method: Compositional matrix adjust. Identities = 314/389 (80%), Positives = 340/389 (87%), Gaps = 3/389 (0%) Query: 5 VTIKVNVDQEGYATTNGLKAQRDVIAKVDNPVVANLRKAGAVLLGRTNCPAVSYRWFTTN 64 VTIK NVDQEG+ATTNGLK QRD+IA+ DNPVVAN RKAGA+LLGRTNCPA SYRWFTTN Sbjct: 77 VTIKANVDQEGFATTNGLKLQRDLIAREDNPVVANFRKAGAILLGRTNCPAFSYRWFTTN 136 Query: 65 LIHGDTKNPRDGGITPGGSSGGAGSAVAAGIGHIAHGTDIAGSVRYPAYACGVHGLRPSM 124 L+HGDTKNPRD +TPGGSSGGAGSAVAAGIGHIAHGTDIAGS+RYPAYACGVHGLRP++ Sbjct: 137 LVHGDTKNPRDASLTPGGSSGGAGSAVAAGIGHIAHGTDIAGSIRYPAYACGVHGLRPTL 196 Query: 125 GRIPAFNSALPERPIGPQISAVSGPLARTVNDLRISLAAMSAPDYRDPWYAPVPLEGPPR 184 GRIPAFN ALPERPIGPQI AVSGPLARTVND+RISLAAMSA D RDPWY P PLEGP R Sbjct: 197 GRIPAFNPALPERPIGPQIMAVSGPLARTVNDIRISLAAMSARDIRDPWYVPAPLEGPAR 256 Query: 185 EKRVAMCLNPDGLNPVPEVVAAVADAGKRLQKAGWIVEEIADTPSLREAAEIQTRLWLGD 244 KR A+CLNPDGL PEV AAV DAGKRL++AGW V+ I +TP +REA E Q +LWLGD Sbjct: 257 PKRAALCLNPDGLATTPEVKAAVTDAGKRLERAGWTVDVIENTPPMREAVEWQIKLWLGD 316 Query: 245 GYEAQLAFAEREGDPGALACLRGVRARVHPFD---LSQALTRRATLTREWFAFFEKYPVL 301 GYEAQL AEREGDPGALACLRG R+RV P D ++ALTRRATLTR+W FFEKY VL Sbjct: 317 GYEAQLEMAEREGDPGALACLRGNRSRVTPMDQANYAKALTRRATLTRDWMLFFEKYAVL 376 Query: 302 LMPVSGELPFPDHLDRKDEASFARVWHAQLPQIAIPFMGLPGLVVSTGLVGRIPVGVQLV 361 L PVSGELPFPDHLDRKD+ SF RVW AQLPQIAIPFMGLPGLVVSTGLVG+ PVGV +V Sbjct: 377 LTPVSGELPFPDHLDRKDDESFKRVWEAQLPQIAIPFMGLPGLVVSTGLVGKAPVGVHIV 436 Query: 362 AGRYREDLCLAAGEAVEAGGTPSSPIDPV 390 +GRYREDLCL AGEA+EAGG P SPIDPV Sbjct: 437 SGRYREDLCLLAGEAIEAGGVPPSPIDPV 465 >ref|YP_001242120.1| amidase [Bradyrhizobium sp. BTAi1] gb|ABQ38214.1| putative amidase [Bradyrhizobium sp. BTAi1] Length = 464 Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust. Identities = 305/386 (79%), Positives = 335/386 (86%) Query: 5 VTIKVNVDQEGYATTNGLKAQRDVIAKVDNPVVANLRKAGAVLLGRTNCPAVSYRWFTTN 64 VTIKVNVDQ GYATTNGL Q+D IA NPVV N KAGAVLLGRTN PAVSYRWFT+N Sbjct: 77 VTIKVNVDQTGYATTNGLNLQKDAIASAHNPVVNNFVKAGAVLLGRTNTPAVSYRWFTSN 136 Query: 65 LIHGDTKNPRDGGITPGGSSGGAGSAVAAGIGHIAHGTDIAGSVRYPAYACGVHGLRPSM 124 LIHG TKNPRD GITPGGSSGGAGSA AAGIGHI HGTDIAGSVRYPAYACG+HGLRP++ Sbjct: 137 LIHGHTKNPRDPGITPGGSSGGAGSATAAGIGHIGHGTDIAGSVRYPAYACGIHGLRPTV 196 Query: 125 GRIPAFNSALPERPIGPQISAVSGPLARTVNDLRISLAAMSAPDYRDPWYAPVPLEGPPR 184 GRIPAFN+ LPERPIGPQISAVSGPLART+ND+RI+LAAMSA D RD W+ PVPLEGP Sbjct: 197 GRIPAFNTCLPERPIGPQISAVSGPLARTINDVRIALAAMSARDVRDIWWMPVPLEGPDL 256 Query: 185 EKRVAMCLNPDGLNPVPEVVAAVADAGKRLQKAGWIVEEIADTPSLREAAEIQTRLWLGD 244 KRV +C+NPDGLNPVPEVVAA+ DA KRL+ AGW V+EI DTP ++EAA +QTRLWLGD Sbjct: 257 PKRVTLCVNPDGLNPVPEVVAALRDAAKRLEVAGWTVDEIKDTPPMQEAALLQTRLWLGD 316 Query: 245 GYEAQLAFAEREGDPGALACLRGVRARVHPFDLSQALTRRATLTREWFAFFEKYPVLLMP 304 GYEAQLA AE+EGDPGALACLRGV +VHPFDLSQ L RRA LTR+W F E++P+LLMP Sbjct: 317 GYEAQLAAAEKEGDPGALACLRGVSDKVHPFDLSQTLARRAALTRQWLTFMEQHPLLLMP 376 Query: 305 VSGELPFPDHLDRKDEASFARVWHAQLPQIAIPFMGLPGLVVSTGLVGRIPVGVQLVAGR 364 VSG LPF D LDRKDE SF +VWHAQL QIAIPF GLPGL VSTG+VGR+PVGVQLV R Sbjct: 377 VSGMLPFADQLDRKDEESFKQVWHAQLTQIAIPFFGLPGLTVSTGMVGRVPVGVQLVGQR 436 Query: 365 YREDLCLAAGEAVEAGGTPSSPIDPV 390 +RED+CLAAGEA+EAGGTP SPIDPV Sbjct: 437 FREDMCLAAGEAIEAGGTPPSPIDPV 462 >ref|YP_001207672.1| amidase [Bradyrhizobium sp. ORS 278] emb|CAL79455.1| putative amidase [Bradyrhizobium sp. ORS 278] Length = 464 Score = 598 bits (1542), Expect = e-169, Method: Compositional matrix adjust. Identities = 303/387 (78%), Positives = 337/387 (87%) Query: 5 VTIKVNVDQEGYATTNGLKAQRDVIAKVDNPVVANLRKAGAVLLGRTNCPAVSYRWFTTN 64 VTIKVNVDQ+GYATTNGL Q+D IA NPVV N KAGAVLLGRTN PAVSYRWFT+N Sbjct: 77 VTIKVNVDQQGYATTNGLNLQKDAIATAHNPVVNNFVKAGAVLLGRTNTPAVSYRWFTSN 136 Query: 65 LIHGDTKNPRDGGITPGGSSGGAGSAVAAGIGHIAHGTDIAGSVRYPAYACGVHGLRPSM 124 LIHG T+NPRD GITPGGSSGGAG+A AAGIGHI HGTDIAGSVRYPAYACG+HGLRP++ Sbjct: 137 LIHGHTRNPRDPGITPGGSSGGAGAATAAGIGHIGHGTDIAGSVRYPAYACGIHGLRPTV 196 Query: 125 GRIPAFNSALPERPIGPQISAVSGPLARTVNDLRISLAAMSAPDYRDPWYAPVPLEGPPR 184 GRIPAFN+ LPERPIGPQISAVSGPLARTVND+RI+LAAMSA D RD W+ PVPLEGPP Sbjct: 197 GRIPAFNTCLPERPIGPQISAVSGPLARTVNDVRIALAAMSARDVRDVWWMPVPLEGPPL 256 Query: 185 EKRVAMCLNPDGLNPVPEVVAAVADAGKRLQKAGWIVEEIADTPSLREAAEIQTRLWLGD 244 KRV +C+NPDGLNPVPEVVAA+ DA +RL+ AGW VEEI DTP ++EAA +QTRLWLGD Sbjct: 257 PKRVTLCVNPDGLNPVPEVVAALRDAARRLEAAGWTVEEIQDTPPMQEAALLQTRLWLGD 316 Query: 245 GYEAQLAFAEREGDPGALACLRGVRARVHPFDLSQALTRRATLTREWFAFFEKYPVLLMP 304 GYEAQLA AE+EGDPGALACLRG R +VHPFDLS L RRA LTR+W F E++P+LL+P Sbjct: 317 GYEAQLAAAEKEGDPGALACLRGNREKVHPFDLSATLARRAALTRQWLLFMEQHPLLLLP 376 Query: 305 VSGELPFPDHLDRKDEASFARVWHAQLPQIAIPFMGLPGLVVSTGLVGRIPVGVQLVAGR 364 VSG LPF D LDRKDE SF +VWHAQL QIAIPF LPGLVVSTG+VGR+PVGVQLV R Sbjct: 377 VSGMLPFADQLDRKDEESFKQVWHAQLTQIAIPFFSLPGLVVSTGMVGRVPVGVQLVGQR 436 Query: 365 YREDLCLAAGEAVEAGGTPSSPIDPVV 391 +RED+CLAAGEA+EAGGTP SPIDPV+ Sbjct: 437 FREDMCLAAGEAIEAGGTPPSPIDPVL 463 >ref|ZP_02887213.1| Amidase [Burkholderia graminis C4D1M] gb|EDT07172.1| Amidase [Burkholderia graminis C4D1M] Length = 459 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 290/379 (76%), Positives = 328/379 (86%) Query: 5 VTIKVNVDQEGYATTNGLKAQRDVIAKVDNPVVANLRKAGAVLLGRTNCPAVSYRWFTTN 64 VTIK+ DQ G+ATT+G++ D IA DNP VANLRKAGA+LLGRTNCP VSYRWF++N Sbjct: 77 VTIKIGADQAGFATTDGMRLLHDHIATFDNPAVANLRKAGAILLGRTNCPTVSYRWFSSN 136 Query: 65 LIHGDTKNPRDGGITPGGSSGGAGSAVAAGIGHIAHGTDIAGSVRYPAYACGVHGLRPSM 124 L+HGDT+NP D GITPGGSS GAG+AVAAGIGHIAHG+DIAGS+RYPAYACGVHGLRPS+ Sbjct: 137 LLHGDTRNPHDPGITPGGSSSGAGAAVAAGIGHIAHGSDIAGSIRYPAYACGVHGLRPSL 196 Query: 125 GRIPAFNSALPERPIGPQISAVSGPLARTVNDLRISLAAMSAPDYRDPWYAPVPLEGPPR 184 GR+P FN + R IG QI AVSGPLART+NDLRI+LAAMSAP+ DPWYAPV L GP R Sbjct: 197 GRVPHFNPSFGGRSIGGQIGAVSGPLARTINDLRIALAAMSAPNAHDPWYAPVSLNGPLR 256 Query: 185 EKRVAMCLNPDGLNPVPEVVAAVADAGKRLQKAGWIVEEIADTPSLREAAEIQTRLWLGD 244 KRVAMC+NPDGL+PVPEV+AAV DAGKRLQ+AGW+VE+I DTP ++EAAEI TRLWLGD Sbjct: 257 PKRVAMCVNPDGLDPVPEVIAAVVDAGKRLQRAGWVVEQIDDTPPMQEAAEILTRLWLGD 316 Query: 245 GYEAQLAFAEREGDPGALACLRGVRARVHPFDLSQALTRRATLTREWFAFFEKYPVLLMP 304 GYEAQL AEREGD GALACLRGVR +VHPFDLS+AL RR L REWFAF +KYPV+LMP Sbjct: 317 GYEAQLEMAEREGDLGALACLRGVRDQVHPFDLSEALARRDMLAREWFAFLDKYPVVLMP 376 Query: 305 VSGELPFPDHLDRKDEASFARVWHAQLPQIAIPFMGLPGLVVSTGLVGRIPVGVQLVAGR 364 VSGELPFPD+LD KDEASF RVWHAQLPQ+AIP +G+P L VSTG +GRIPVGVQLVA R Sbjct: 377 VSGELPFPDNLDLKDEASFKRVWHAQLPQVAIPLIGVPALSVSTGRIGRIPVGVQLVAAR 436 Query: 365 YREDLCLAAGEAVEAGGTP 383 +REDLCLAAGEA+E G P Sbjct: 437 FREDLCLAAGEAIETSGWP 455 >ref|YP_533520.1| amidase [Rhodopseudomonas palustris BisB18] gb|ABD89201.1| Amidase [Rhodopseudomonas palustris BisB18] Length = 466 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 291/389 (74%), Positives = 331/389 (85%), Gaps = 3/389 (0%) Query: 5 VTIKVNVDQEGYATTNGLKAQRDVIAKVDNPVVANLRKAGAVLLGRTNCPAVSYRWFTTN 64 VT+KVNVDQ+G+ATTNG+ QR++IAKVD+PVVANLRKAGAV+LGRTN PA SYRWFT+N Sbjct: 77 VTVKVNVDQQGFATTNGVTLQRELIAKVDSPVVANLRKAGAVILGRTNTPAFSYRWFTSN 136 Query: 65 LIHGDTKNPRDGGITPGGSSGGAGSAVAAGIGHIAHGTDIAGSVRYPAYACGVHGLRPSM 124 LIHG TKNPRD G+TPGGSSGGA +AVAAGIGHIAHGTDIAGS+RYPAYACGVHGLRP++ Sbjct: 137 LIHGATKNPRDPGLTPGGSSGGAAAAVAAGIGHIAHGTDIAGSIRYPAYACGVHGLRPTL 196 Query: 125 GRIPAFNSALPERPIGPQISAVSGPLARTVNDLRISLAAMSAPDYRDPWYAPVPLEGPPR 184 GRIPA+N++ PER IGPQI+AVSGPLAR++ D+RI+ AAM+ PD RDPW+ P PLEGP Sbjct: 197 GRIPAWNASSPERSIGPQITAVSGPLARSIGDIRIAFAAMTQPDPRDPWHVPAPLEGPAV 256 Query: 185 EKRVAMCLNPDGLNPVPEVVAAVADAGKRLQKAGWIVEEIADTPSLREAAEIQTRLWLGD 244 KRV +CL PDGL PE+ AA+ DAG+RLQ+AGW VEE P LREAAE+QTRLWL D Sbjct: 257 AKRVLLCLRPDGLKIAPEIEAALRDAGERLQRAGWQVEERDAIPPLREAAELQTRLWLAD 316 Query: 245 GYEAQLAFAEREGDPGALACLRGVRARVHPFDL---SQALTRRATLTREWFAFFEKYPVL 301 GYEA LA AEREGDPGALACLRG R + DL S LTRRATLTR+W FF + V+ Sbjct: 317 GYEAMLALAEREGDPGALACLRGNREQAQGIDLAAFSGLLTRRATLTRQWQMFFADWAVV 376 Query: 302 LMPVSGELPFPDHLDRKDEASFARVWHAQLPQIAIPFMGLPGLVVSTGLVGRIPVGVQLV 361 LMPVSGELPF D LD +D+ASF RVW AQ+PQIAIPF+GLP L VSTGLVGRIPVGVQLV Sbjct: 377 LMPVSGELPFADQLDLRDDASFKRVWRAQMPQIAIPFVGLPALTVSTGLVGRIPVGVQLV 436 Query: 362 AGRYREDLCLAAGEAVEAGGTPSSPIDPV 390 AGRYREDLCLAAGEA+EAGG P+SPIDPV Sbjct: 437 AGRYREDLCLAAGEAIEAGGVPASPIDPV 465