BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0123.p (400 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769575.1| hypothetical protein blr2935 [Bradyrhizobium ja... 697 0.0 ref|YP_534457.1| secretion protein HlyD [Rhodopseudomonas palust... 597 e-169 ref|YP_487214.1| secretion protein HlyD [Rhodopseudomonas palust... 590 e-166 ref|NP_947100.1| cation efflux pump HlyD [Rhodopseudomonas palus... 583 e-164 ref|YP_001990953.1| RND family efflux transporter MFP subunit [R... 576 e-162 >ref|NP_769575.1| hypothetical protein blr2935 [Bradyrhizobium japonicum USDA 110] dbj|BAC48200.1| blr2935 [Bradyrhizobium japonicum USDA 110] Length = 400 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/400 (86%), Positives = 369/400 (92%) Query: 1 MPPTEQRPPVSRRKLGIFGVVALVGAGLIVGTGIRAREEQDTRLKEWTDDQAIPTVAVAL 60 M PTE R PVS RKLGIFGVVAL+ AGL+VGTGIRAREEQ ++LKEWTDDQA+P+VAV Sbjct: 1 MSPTESRSPVSHRKLGIFGVVALIAAGLVVGTGIRAREEQGSKLKEWTDDQAVPSVAVTQ 60 Query: 61 PNAKALSPTIDLPGRLEAYSRAPIYARVSGYLKNWDADIGARVKAGQVIAEIEAPDLDQQ 120 PNAKAL+ T+DLPGRLEAY RAPI+ARVSGYLK+W AD+GARVKAGQVIAEIEAPDLDQQ Sbjct: 61 PNAKALNATLDLPGRLEAYYRAPIFARVSGYLKSWSADMGARVKAGQVIAEIEAPDLDQQ 120 Query: 121 LLQARADLASAQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNGAVKAGQANV 180 LLQARADLAS QASA+LSEATLNRRKTLVASNFVSAQEIDERTADLSNKN AV +GQANV Sbjct: 121 LLQARADLASQQASARLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNAAVHSGQANV 180 Query: 181 ERLEALAGYKKITAPFDGVVTSRDTDVGALINAGGNSGPAMFTISDITKLRVYVNVPQNY 240 ERLEALAGYKKIT PFDGVVT+RDTDVGALINAGG SGPAMF +SDITKLRVYVNVPQNY Sbjct: 181 ERLEALAGYKKITVPFDGVVTARDTDVGALINAGGGSGPAMFVVSDITKLRVYVNVPQNY 240 Query: 241 VPAIKIGAKATLALPDYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGSYAS 300 VPAIKIGAKA +ALP+YPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPG YAS Sbjct: 241 VPAIKIGAKAIIALPEYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGGYAS 300 Query: 301 VKLNLQRESTPLSIPASALIFNSSGLRVATVGPDDKVLFKTVKIGRDLGKEIEIATGLAP 360 VKL+LQR+S PLSIPASALIFN SGLRVATVG DDKVLFK V I RDLGKEIE+A+G++P Sbjct: 301 VKLSLQRDSAPLSIPASALIFNGSGLRVATVGADDKVLFKAVTIARDLGKEIELASGISP 360 Query: 361 DDRIITAPPAGLADGDHVRVTGAGAKGKPTTASEKQDVKG 400 DDR+ITAPP GL+DGD VRV GAGAKGKP TASEKQ KG Sbjct: 361 DDRVITAPPDGLSDGDQVRVVGAGAKGKPATASEKQAPKG 400 >ref|YP_534457.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] gb|ABD90138.1| secretion protein HlyD [Rhodopseudomonas palustris BisB18] Length = 414 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 298/393 (75%), Positives = 336/393 (85%) Query: 8 PPVSRRKLGIFGVVALVGAGLIVGTGIRAREEQDTRLKEWTDDQAIPTVAVALPNAKALS 67 P VSRRKLG+ G++ + A +IV TGI AR++ + L++WTD QAIP+VAVALP+AK L+ Sbjct: 22 PRVSRRKLGLAGLLGVSVAAVIVVTGIMARDKSNAELRDWTDAQAIPSVAVALPDAKLLT 81 Query: 68 PTIDLPGRLEAYSRAPIYARVSGYLKNWDADIGARVKAGQVIAEIEAPDLDQQLLQARAD 127 T+DLPGRLEAYSRAPI+ARVSGYLK+W ADIGA+VKAGQVIAEIEAPDLDQQLLQARAD Sbjct: 82 ATLDLPGRLEAYSRAPIFARVSGYLKSWSADIGAKVKAGQVIAEIEAPDLDQQLLQARAD 141 Query: 128 LASAQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNGAVKAGQANVERLEALA 187 LAS QASA+LSEATLNRRKTLVASNFVSAQEIDERTADL+NK AV +GQANVERLEALA Sbjct: 142 LASQQASARLSEATLNRRKTLVASNFVSAQEIDERTADLANKKAAVNSGQANVERLEALA 201 Query: 188 GYKKITAPFDGVVTSRDTDVGALINAGGNSGPAMFTISDITKLRVYVNVPQNYVPAIKIG 247 GYK IT PFDGV+T R+TDVGALI+ G +GPAMF +SDITKLRVYVNVPQ+YVPAIKIG Sbjct: 202 GYKNITVPFDGVITERNTDVGALISGGAGTGPAMFVVSDITKLRVYVNVPQSYVPAIKIG 261 Query: 248 AKATLALPDYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGSYASVKLNLQR 307 AKA L LPDYPNR F AT+EASSQAVDV SGTTRMQL LDNS GELMPG YA+V+LNL Sbjct: 262 AKAELTLPDYPNRAFTATLEASSQAVDVGSGTTRMQLALDNSRGELMPGGYANVRLNLSH 321 Query: 308 ESTPLSIPASALIFNSSGLRVATVGPDDKVLFKTVKIGRDLGKEIEIATGLAPDDRIITA 367 + PL IPASAL+F +GLRVATVGPDD+VLFK V I RDLG++IEIA+GLA +DRIITA Sbjct: 322 DGAPLHIPASALVFGRNGLRVATVGPDDRVLFKKVAIARDLGRDIEIASGLASEDRIITA 381 Query: 368 PPAGLADGDHVRVTGAGAKGKPTTASEKQDVKG 400 PP G+ DGD VRV KP TASEKQD KG Sbjct: 382 PPDGINDGDPVRVVSGPKSAKPATASEKQDSKG 414 >ref|YP_487214.1| secretion protein HlyD [Rhodopseudomonas palustris HaA2] gb|ABD08303.1| Secretion protein HlyD [Rhodopseudomonas palustris HaA2] Length = 400 Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust. Identities = 298/399 (74%), Positives = 338/399 (84%), Gaps = 3/399 (0%) Query: 4 TEQRPPVSRRKLGIFGVVALVGAGLIVGTGIRAREEQDTRLKEWTDDQAIPTVAVALPNA 63 T+ P SRR LGI G++ GA +V TGI ARE+ L+ WTD+QAI +VAV P+ Sbjct: 3 TDAPPRKSRRGLGIAGILLACGAVAVVVTGISAREKSSADLRHWTDEQAISSVAVTRPDG 62 Query: 64 KALSPTIDLPGRLEAYSRAPIYARVSGYLKNWDADIGARVKAGQVIAEIEAPDLDQQLLQ 123 K L+ T+DLPGRLEAYSRAPIYARVSGY+K+W ADIGARVKAGQVIAE+EAPDLDQQLLQ Sbjct: 63 KVLTNTLDLPGRLEAYSRAPIYARVSGYVKSWSADIGARVKAGQVIAEVEAPDLDQQLLQ 122 Query: 124 ARADLASAQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNGAVKAGQANVERL 183 ARADLAS QASA+LSEATLNRRKTL+ASNFVSAQEIDER+ADL+NK AV +GQANVERL Sbjct: 123 ARADLASQQASARLSEATLNRRKTLLASNFVSAQEIDERSADLANKKAAVNSGQANVERL 182 Query: 184 EALAGYKKITAPFDGVVTSRDTDVGALINAGGNSGPAMFTISDITKLRVYVNVPQNYVPA 243 EALAGYKKITAPFDGVVT R+TDVGALI+AG ++GPAMF +SDI KLRVYVNVPQ YVP Sbjct: 183 EALAGYKKITAPFDGVVTERNTDVGALISAGSSAGPAMFVVSDIAKLRVYVNVPQTYVPM 242 Query: 244 IKIGAKATLALPDYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGSYASVKL 303 IKIGAKA + LP+YPNR+F ATVEASSQAVDV+SGTTRMQL LDN+ GELMPG YA+VKL Sbjct: 243 IKIGAKAVITLPEYPNRSFPATVEASSQAVDVSSGTTRMQLALDNAKGELMPGGYANVKL 302 Query: 304 NLQRESTPLSIPASALIFNSSGLRVATVGPDDKVLFKTVKIGRDLGKEIEIATGLAPDDR 363 +L R+ L IPASAL+FN SGLRVA VGPDD+V KTV I RDLG+EIE+A+GL+PDDR Sbjct: 303 SLVRDEVSLYIPASALMFNRSGLRVAVVGPDDRVQLKTVTIARDLGREIELASGLSPDDR 362 Query: 364 IITAPPAGLADGDHVRVTG--AGAKGKPTTASEKQDVKG 400 II APP G+ADG+ VRV G AG GKP TASEKQDVKG Sbjct: 363 IIVAPPDGIADGEKVRVVGNDAGKAGKP-TASEKQDVKG 400 >ref|NP_947100.1| cation efflux pump HlyD [Rhodopseudomonas palustris CGA009] emb|CAE27196.1| possible cation/heavy metal efflux pump, HlyD family secretion protein [Rhodopseudomonas palustris CGA009] Length = 400 Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust. Identities = 300/400 (75%), Positives = 333/400 (83%), Gaps = 3/400 (0%) Query: 3 PTEQRPPVSRRKLGIFGVVALVGAGLIVGTGIRAREEQDTRLKEWTDDQAIPTVAVALPN 62 PT+Q P SRR LGI GVV GA IV TGI ARE+ L+ WTD+QAI +VAV P+ Sbjct: 2 PTDQPPRRSRRGLGIAGVVLACGAVAIVVTGISAREKSSAELRTWTDEQAISSVAVTRPD 61 Query: 63 AKALSPTIDLPGRLEAYSRAPIYARVSGYLKNWDADIGARVKAGQVIAEIEAPDLDQQLL 122 KA + T+DLPGRLEAYSRAPIYARVSGY+K+W ADIGA+VKAG+VIAEIEAPDLDQQLL Sbjct: 62 GKAPTATLDLPGRLEAYSRAPIYARVSGYVKSWSADIGAKVKAGEVIAEIEAPDLDQQLL 121 Query: 123 QARADLASAQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNGAVKAGQANVER 182 QARADLAS QASAKLSEATLNRRKTLVASNFVSAQEIDERTADL+ K AV +GQANVER Sbjct: 122 QARADLASQQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLAAKKAAVNSGQANVER 181 Query: 183 LEALAGYKKITAPFDGVVTSRDTDVGALINAGGNSGPAMFTISDITKLRVYVNVPQNYVP 242 LEALAGYKKITAPFDGVVT R+TDVGALINAG +SGPAMF +SDI KLRVYVNVPQNY P Sbjct: 182 LEALAGYKKITAPFDGVVTERNTDVGALINAGSSSGPAMFVVSDIAKLRVYVNVPQNYAP 241 Query: 243 AIKIGAKATLALPDYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGSYASVK 302 ++IG KA +ALP+YP RTF ATVEASSQAVDVASGT R+QLGLDN+ GELMPG +A+VK Sbjct: 242 LVRIGGKAVIALPEYPGRTFPATVEASSQAVDVASGTMRIQLGLDNAKGELMPGGFANVK 301 Query: 303 LNLQRESTPLSIPASALIFNSSGLRVATVGPDDKVLFKTVKIGRDLGKEIEIATGLAPDD 362 L L R+S PL IPASALIFN SGLRVATVG DD+V K V I RDLG+EIE++ GL DD Sbjct: 302 LALVRDSAPLHIPASALIFNRSGLRVATVGSDDRVQLKPVTIARDLGREIELSAGLTADD 361 Query: 363 RIITAPPAGLADGDHVRVTG--AGAKGKPTTASEKQDVKG 400 RII APP G+A+G+ VRV A GKP TASEKQDVKG Sbjct: 362 RIIIAPPDGIANGEKVRVVADDAAKAGKP-TASEKQDVKG 400 >ref|YP_001990953.1| RND family efflux transporter MFP subunit [Rhodopseudomonas palustris TIE-1] gb|ACF00478.1| efflux transporter, RND family, MFP subunit [Rhodopseudomonas palustris TIE-1] Length = 400 Score = 576 bits (1484), Expect = e-162, Method: Compositional matrix adjust. Identities = 296/399 (74%), Positives = 331/399 (82%), Gaps = 1/399 (0%) Query: 3 PTEQRPPVSRRKLGIFGVVALVGAGLIVGTGIRAREEQDTRLKEWTDDQAIPTVAVALPN 62 PT+Q P SRR LGI GVV GA IV TGI AR++ L+ WTD+QAI +VAV P+ Sbjct: 2 PTDQPPRRSRRGLGIAGVVLACGAVAIVVTGISARQKSSAELRTWTDEQAISSVAVTRPD 61 Query: 63 AKALSPTIDLPGRLEAYSRAPIYARVSGYLKNWDADIGARVKAGQVIAEIEAPDLDQQLL 122 KA + T+DLPGRLEAYSRAPIYARVSGY+K+W ADIGA+VKAG+VIAEIEAPDLDQQLL Sbjct: 62 GKAPTATLDLPGRLEAYSRAPIYARVSGYVKSWSADIGAKVKAGEVIAEIEAPDLDQQLL 121 Query: 123 QARADLASAQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLSNKNGAVKAGQANVER 182 QARADLAS QASAKLSEATLNRRKTLVASNFVSAQEIDERTADL+ K AV +GQANVER Sbjct: 122 QARADLASQQASAKLSEATLNRRKTLVASNFVSAQEIDERTADLAAKKAAVNSGQANVER 181 Query: 183 LEALAGYKKITAPFDGVVTSRDTDVGALINAGGNSGPAMFTISDITKLRVYVNVPQNYVP 242 LEALAGYKKITAPFDG+VT R+TDVGALINAG +SGPAMF +SDI KLRVYVNVPQNY P Sbjct: 182 LEALAGYKKITAPFDGIVTERNTDVGALINAGSSSGPAMFVVSDIAKLRVYVNVPQNYAP 241 Query: 243 AIKIGAKATLALPDYPNRTFQATVEASSQAVDVASGTTRMQLGLDNSSGELMPGSYASVK 302 ++IG KA +ALP+YP RTF ATVEASSQAVDVASGT R+QLGLDN+ GELMPG +A+VK Sbjct: 242 LVRIGGKAVIALPEYPGRTFPATVEASSQAVDVASGTMRIQLGLDNAKGELMPGGFANVK 301 Query: 303 LNLQRESTPLSIPASALIFNSSGLRVATVGPDDKVLFKTVKIGRDLGKEIEIATGLAPDD 362 L L R+S PL IPASALIFN SGLRVATVGPDD+V K V I RDLG+EIE++ GL DD Sbjct: 302 LALVRDSAPLHIPASALIFNRSGLRVATVGPDDRVQLKPVTIARDLGREIELSAGLTADD 361 Query: 363 RIITAPPAGLADGDHVRVTGAGAKGKPT-TASEKQDVKG 400 RII APP G+A+G+ VRV A TASEKQDVKG Sbjct: 362 RIIIAPPDGIANGEKVRVVADDAAKAAKPTASEKQDVKG 400