BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0112.p (514 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773386.1| hypothetical protein bll6746 [Bradyrhizobium ja... 754 0.0 ref|YP_001238659.1| hypothetical protein BBta_2604 [Bradyrhizobi... 294 3e-77 ref|YP_001203424.1| hypothetical protein BRADO1286 [Bradyrhizobi... 292 1e-76 ref|YP_001237446.1| hypothetical protein BBta_1300 [Bradyrhizobi... 281 3e-73 ref|YP_001208158.1| hypothetical protein BRADO6307 [Bradyrhizobi... 268 2e-69 >ref|NP_773386.1| hypothetical protein bll6746 [Bradyrhizobium japonicum USDA 110] dbj|BAC52011.1| bll6746 [Bradyrhizobium japonicum USDA 110] Length = 510 Score = 754 bits (1947), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/520 (72%), Positives = 429/520 (82%), Gaps = 16/520 (3%) Query: 1 MGEIRDFKSGRSQSDNTQPPGTSMPRRLAAIVVGDIAGYSRLMQLDEEGTHTRVKRAERD 60 MGEIR+F+SG + N P +MPRRLAAI+VGDIA YSRLMQ DEEGTH RVKR ERD Sbjct: 1 MGEIRNFRSG---NQNEPPSHGAMPRRLAAIIVGDIASYSRLMQADEEGTHVRVKRIERD 57 Query: 61 LIEPTIAEHHGKLVKTTGDGFIAIFDSPVEAVRCSIVIQQNMIGRNAAIARDRWIEYRIG 120 LIEP+I EHHG LVKTTGDGFIAIFDSPVEAVRCSIVIQQN+IGRNA++ + IEYRIG Sbjct: 58 LIEPSIVEHHGSLVKTTGDGFIAIFDSPVEAVRCSIVIQQNLIGRNASLPKHSRIEYRIG 117 Query: 121 VNLGDVIIEADDIYGDGVNVASRLEGIAAPGEVFISGGIYEQIKHKMVCGYESLGDRKVK 180 VNLGDVIIE DD+YGDGVN+A+R+EGIA PG+V+ISG IYEQIKHK+VCGYE+LGDRKVK Sbjct: 118 VNLGDVIIEPDDVYGDGVNIATRIEGIAEPGQVYISGAIYEQIKHKVVCGYEALGDRKVK 177 Query: 181 NITDPVRVYRVLPDAAAYQRTRRRRESILLTLLGLAIAIIAGGVLWYLLAQPRGKPADVA 240 NITDPVR+YRVLPDA A TR RRE+ L+ LL L + + A GVLWYLLAQP GK ++ A Sbjct: 178 NITDPVRIYRVLPDADAVGGTRGRRENTLIFLLSLTLLVSAAGVLWYLLAQPPGKGSEQA 237 Query: 241 QAP-PSPTASPAVQPPAPSPAPTQTASPTP-----AAPTQQASPQPAPSASPTPDLPEPE 294 P SP ASP QPPA ++A PTP A +P P PS SPTP EP+ Sbjct: 238 ATPTASPVASPVQQPPA-----RESAVPTPQPSPSLASPAPPAPTPTPSQSPTP-ASEPD 291 Query: 295 LVLLQAGSFSMGSNDDPSERPIRRVTVKPFAMGKYPVTIREWNACAAAKACGFTASGKDD 354 + ++ GSF+MGSNDDP+ERP+ +V +KPF++GKYPVT+REWN CAAAKACGFTA GKDD Sbjct: 292 MTAIRGGSFTMGSNDDPTERPVHQVAIKPFSIGKYPVTVREWNECAAAKACGFTAIGKDD 351 Query: 355 VPVTNVSWSDAKQYVTWLAERTKKPYRLPSEAEWEYAARGGTQSKYWWGDQMQSGHAGCK 414 PVTNVSW+DA+QY WLA+ TKKPYRLPSEAEWEYAARGGTQSKYWWGD++Q G AGCK Sbjct: 352 APVTNVSWTDAQQYAAWLAQATKKPYRLPSEAEWEYAARGGTQSKYWWGDKLQPGMAGCK 411 Query: 415 DCGGDSAAEQPVKVGSYKPNPFGLYDMGGGVDQWVEDCWHRNYQGAPTDGAVWSAGDCPS 474 DC GD+AAEQP KVGS+KPNPFGLYDMGGGVDQWV DCWHR YQGAP DG+ WS GDC S Sbjct: 412 DC-GDAAAEQPSKVGSFKPNPFGLYDMGGGVDQWVADCWHRTYQGAPNDGSAWSGGDCSS 470 Query: 475 HVIRSGSWKNDARYVRPANRDNYDTNVRYPTHGFRVALSP 514 HV+RSGSWKND+RYVRP+NRD YDTNVRYPTHGFRVAL P Sbjct: 471 HVLRSGSWKNDSRYVRPSNRDGYDTNVRYPTHGFRVALGP 510 >ref|YP_001238659.1| hypothetical protein BBta_2604 [Bradyrhizobium sp. BTAi1] gb|ABQ34753.1| hypothetical protein BBta_2604 [Bradyrhizobium sp. BTAi1] Length = 497 Score = 294 bits (752), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 138/240 (57%), Positives = 167/240 (69%), Gaps = 2/240 (0%) Query: 274 QQASPQPAPSASPTPDLPEPELVLLQAGSFSMGSNDDPSERPIRRVTVKPFAMGKYPVTI 333 Q AS P PS + P++V++ G+F+MG + SE P+ RVT+KPFA+GKYPVTI Sbjct: 259 QAASTTPTPSPE-VAKIRLPDIVMIPGGTFAMGGTES-SELPVHRVTIKPFALGKYPVTI 316 Query: 334 REWNACAAAKACGFTASGKDDVPVTNVSWSDAKQYVTWLAERTKKPYRLPSEAEWEYAAR 393 EW C A KAC SG DD P+TNVS+ DA+ Y+TWL+ KP+RLP+EAEWEYAAR Sbjct: 317 GEWKECVADKACADVTSGPDDNPITNVSYDDARDYLTWLSRTVGKPFRLPTEAEWEYAAR 376 Query: 394 GGTQSKYWWGDQMQSGHAGCKDCGGDSAAEQPVKVGSYKPNPFGLYDMGGGVDQWVEDCW 453 GGT + +WWGDQM+ G A C C A Q +KVGS+ NPFGL+DMGGGVDQWV D W Sbjct: 377 GGTSTAFWWGDQMRGGMANCSRCNDAGAPAQRMKVGSFPANPFGLFDMGGGVDQWVADSW 436 Query: 454 HRNYQGAPTDGAVWSAGDCPSHVIRSGSWKNDARYVRPANRDNYDTNVRYPTHGFRVALS 513 H+ YQGAP+DG+ W VIRSGSWKNDA Y R +RD YD VRYPTHG R+ALS Sbjct: 437 HKTYQGAPSDGSAWIDEQSFIRVIRSGSWKNDASYARSGSRDRYDGRVRYPTHGLRIALS 496 >ref|YP_001203424.1| hypothetical protein BRADO1286 [Bradyrhizobium sp. ORS 278] emb|CAL75187.1| hypothetical protein BRADO1286 [Bradyrhizobium sp. ORS 278] Length = 549 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 134/221 (60%), Positives = 162/221 (73%), Gaps = 1/221 (0%) Query: 293 PELVLLQAGSFSMGSNDDPSERPIRRVTVKPFAMGKYPVTIREWNACAAAKACGFTASGK 352 P++V++ G+F+MG ++ SE P RV +KPFA+GKYPVT+ EW C A KAC SG Sbjct: 329 PDVVMIPGGTFTMGGSET-SELPAHRVAIKPFALGKYPVTLGEWKECVADKACTDVTSGP 387 Query: 353 DDVPVTNVSWSDAKQYVTWLAERTKKPYRLPSEAEWEYAARGGTQSKYWWGDQMQSGHAG 412 DD PVTNVS+ DA+ Y+ WL+ + KP+RLP+EAEWEYAARGG +K+WWGDQM+ G A Sbjct: 388 DDNPVTNVSYDDARDYLGWLSRKIGKPFRLPTEAEWEYAARGGAATKFWWGDQMRPGMAN 447 Query: 413 CKDCGGDSAAEQPVKVGSYKPNPFGLYDMGGGVDQWVEDCWHRNYQGAPTDGAVWSAGDC 472 C C A Q +KVGS+ NPFGLYDMGGGVDQWV D WH++YQGAP+DG+ W Sbjct: 448 CNRCNEADAPPQLMKVGSFPANPFGLYDMGGGVDQWVADSWHKSYQGAPSDGSAWIDEQS 507 Query: 473 PSHVIRSGSWKNDARYVRPANRDNYDTNVRYPTHGFRVALS 513 HVIRSGSWKNDA Y R +RD YD VRYPTHGFRVALS Sbjct: 508 FLHVIRSGSWKNDASYARSGSRDRYDGRVRYPTHGFRVALS 548 >ref|YP_001237446.1| hypothetical protein BBta_1300 [Bradyrhizobium sp. BTAi1] gb|ABQ33540.1| hypothetical protein BBta_1300 [Bradyrhizobium sp. BTAi1] Length = 491 Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 156/319 (48%), Positives = 193/319 (60%), Gaps = 32/319 (10%) Query: 225 LWYLLAQPRGKPADVAQAPPSPT-----------ASPAVQPPAPSPAPTQTASPTPAAPT 273 L L+ P G A Q P PT A+P+ Q APS T +A P Sbjct: 176 LQILIQAPPGLSAVSLQREPLPTSVAVRRTTMDAAAPSTQ--APSSQRTPSAPPVAMRQP 233 Query: 274 QQASPQPAP---------------SASPTPDLPEPELVLLQAGSFSMGSNDDPSERPIRR 318 Q A P P P +AS P L PE V + G+F+MG DD SE+P+ + Sbjct: 234 QAADPLPLPEGPSAGNPKPVVLADAASAQPKLRVPETVAIPGGTFAMGGEDD-SEQPVHQ 292 Query: 319 VTVKPFAMGKYPVTIREWNACAAAKACGFTASGKDDVPVTNVSWSDAKQYVTWLAERTKK 378 V+++PFAMGKYPVT+ EW AC AA +C A+G DD PVTN S+ DA+ Y+ WLA+ T K Sbjct: 293 VSIRPFAMGKYPVTVGEWKACVAAGSCADIAAGSDDQPVTNASYDDAQAYLGWLAKVTGK 352 Query: 379 PYRLPSEAEWEYAARGGTQSKYWWGDQMQSGHAGCKDCGGDSA---AEQPVKVGSYKPNP 435 +RLP+EAEWEYAAR G +SKYWWGD+M+ G A CK C S A QP+KVGS+ NP Sbjct: 353 AFRLPTEAEWEYAARAGRRSKYWWGDRMRPGMANCKGCNTASETSDAAQPLKVGSFAANP 412 Query: 436 FGLYDMGGGVDQWVEDCWHRNYQGAPTDGAVWSAGDCPSHVIRSGSWKNDARYVRPANRD 495 FGL+DMGG V QWV D WH++Y+GAP DGA W + VIRSGSW N A R +RD Sbjct: 413 FGLFDMGGEVAQWVADNWHKSYKGAPADGAAWLDDGSYARVIRSGSWSNGAADARAGSRD 472 Query: 496 NYDTNVRYPTHGFRVALSP 514 YD +R+PT GFRVAL+P Sbjct: 473 RYDGRIRHPTLGFRVALTP 491 >ref|YP_001208158.1| hypothetical protein BRADO6307 [Bradyrhizobium sp. ORS 278] emb|CAL79943.1| hypothetical protein BRADO6307 [Bradyrhizobium sp. ORS 278] Length = 485 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/332 (44%), Positives = 196/332 (59%), Gaps = 27/332 (8%) Query: 205 RESILLTLLGLAIAIIAGGVLWYL-------------LAQPRGKPADVAQAPPSP----T 247 R + +++LG+ + GGVL L LA P D APP+ Sbjct: 157 RAVVAVSILGV---VFLGGVLLPLREIRLLIQTPPGGLAASSSAPRDALSAPPTSPRRIL 213 Query: 248 ASPAVQPPAPSPAPTQTASPTPAAPTQQAS------PQPAPSASPTPDLPEPELVLLQAG 301 + A PP + P PAA AS P P+ P P L PEL+ + G Sbjct: 214 SESAATPPGGQQVQSTFVPPRPAAGADMASVPAEPVAAPRPAPEPEPKLRVPELIAVAGG 273 Query: 302 SFSMGSNDDPSERPIRRVTVKPFAMGKYPVTIREWNACAAAKACGFTASGKDDVPVTNVS 361 +F+MG DD SE+P+ +V++KPF++GK+PVT+ EW +C AA +C A G DD PV NVS Sbjct: 274 NFAMG-GDDESEQPVHQVSIKPFSLGKHPVTVGEWKSCVAAASCPDIAIGPDDRPVVNVS 332 Query: 362 WSDAKQYVTWLAERTKKPYRLPSEAEWEYAARGGTQSKYWWGDQMQSGHAGCKDCGGDSA 421 + D + Y+ WL+ T K +RLP+EAEWEYAAR G +++YWWGD+M+ G A C+ C GD+ Sbjct: 333 YDDTQAYLAWLSRATGKTFRLPTEAEWEYAARAGQRTRYWWGDRMRQGMASCRGCNGDAE 392 Query: 422 AEQPVKVGSYKPNPFGLYDMGGGVDQWVEDCWHRNYQGAPTDGAVWSAGDCPSHVIRSGS 481 + P K+ S + NPFGL+DMGGGV QWV D WH+NY+GAP DG+ W + VIRSGS Sbjct: 393 LDLPPKIASTQVNPFGLHDMGGGVGQWVADSWHKNYKGAPADGSAWLEDGSYARVIRSGS 452 Query: 482 WKNDARYVRPANRDNYDTNVRYPTHGFRVALS 513 WKN R +RD YD +R+PT GFRVA S Sbjct: 453 WKNGPSDARAGSRDRYDGRIRHPTLGFRVASS 484