BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0110.p (248 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773364.1| hypothetical protein bll6724 [Bradyrhizobium ja... 420 e-115 ref|YP_001207662.1| putative periplasmic-binding protein amino-a... 398 e-109 ref|YP_001207658.1| putative periplasmic-binding protein amino-a... 301 5e-80 ref|YP_001242109.1| putative periplasmic-binding protein [Bradyr... 295 5e-78 ref|YP_001753979.1| extracellular solute-binding protein [Methyl... 154 1e-35 >ref|NP_773364.1| hypothetical protein bll6724 [Bradyrhizobium japonicum USDA 110] dbj|BAC51989.1| bll6724 [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/239 (83%), Positives = 218/239 (91%) Query: 8 DALKDQIAPTGKLRVAIAISPAGGAFWSTKTENGYAGVPVDLGREMAAQLGIPVEYVVHQ 67 D LKD+IAPTGKLRVAIAISPAGGAFWST+TE GYAGVPVDLG+EMAAQLG+ VEYVVHQ Sbjct: 124 DGLKDEIAPTGKLRVAIAISPAGGAFWSTRTETGYAGVPVDLGKEMAAQLGVGVEYVVHQ 183 Query: 68 NSGQITDAAAKNTWDITFLPKDPERETKMTFGPIYEVADATYIVKPGSTITNFATLDQDG 127 NSGQITDAA+K TWD+T+LPKDPERE+KM FGPIYEVADATYIVK GS +T+FA+LDQ G Sbjct: 184 NSGQITDAASKGTWDVTWLPKDPERESKMMFGPIYEVADATYIVKAGSNVTSFASLDQPG 243 Query: 128 VKVAAVNATTTMRGAIAHLKHAKVTGYQTYDEIFNLLKSGEIDAFALSRDQLNAMAKKIP 187 +KVAAVNATTTMRGA+AHL++A+VTGYQTYDEIF LLKSGEIDAFALSRDQLN MA+KIP Sbjct: 244 IKVAAVNATTTMRGAVAHLRNAEVTGYQTYDEIFGLLKSGEIDAFALSRDQLNKMAQKIP 303 Query: 188 GTHVLDETFKQTVTAVAVPLNHPLAAAFATGFMTEAVANGTLRKAYDNNGLKGSPVRTE 246 GT VLDETFK+TVTAVAVPL H LA F T FM EA NGTLRKAYDNNGLK SP+RTE Sbjct: 304 GTKVLDETFKKTVTAVAVPLGHSLALTFVTKFMNEATINGTLRKAYDNNGLKDSPIRTE 362 >ref|YP_001207662.1| putative periplasmic-binding protein amino-acid periplasmic-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79445.1| putative periplasmic-binding protein; putative amino-acid periplasmic-binding protein [Bradyrhizobium sp. ORS 278] Length = 265 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/248 (77%), Positives = 217/248 (87%), Gaps = 2/248 (0%) Query: 1 MATSADADA--LKDQIAPTGKLRVAIAISPAGGAFWSTKTENGYAGVPVDLGREMAAQLG 58 M TS+ A LKD+IAPTGKLRVAIAISPAGGAFWST+TE GY+GVPVDLGR MA +LG Sbjct: 18 MMTSSHGGAAELKDEIAPTGKLRVAIAISPAGGAFWSTRTETGYSGVPVDLGRAMADRLG 77 Query: 59 IPVEYVVHQNSGQITDAAAKNTWDITFLPKDPERETKMTFGPIYEVADATYIVKPGSTIT 118 +PV+YVVHQNSGQITDAA K TWD+TFLPKDPERET+M FGPIYEVADATYIVKPGS +T Sbjct: 78 VPVDYVVHQNSGQITDAADKGTWDVTFLPKDPERETRMAFGPIYEVADATYIVKPGSPVT 137 Query: 119 NFATLDQDGVKVAAVNATTTMRGAIAHLKHAKVTGYQTYDEIFNLLKSGEIDAFALSRDQ 178 +F+ LDQ G+KVAAVN TTTMRGA AHLK+A VTGYQTYDEIF LL+ GEIDAFALSRDQ Sbjct: 138 SFSALDQPGIKVAAVNNTTTMRGAKAHLKNASVTGYQTYDEIFGLLQRGEIDAFALSRDQ 197 Query: 179 LNAMAKKIPGTHVLDETFKQTVTAVAVPLNHPLAAAFATGFMTEAVANGTLRKAYDNNGL 238 L+AMA+KIPGT VLDETFK+TVTAVAVPL H A AF + FMT+A +NG LRKAYD NGL Sbjct: 198 LDAMARKIPGTRVLDETFKKTVTAVAVPLGHDKALAFVSSFMTDAASNGLLRKAYDANGL 257 Query: 239 KGSPVRTE 246 K +P+RT+ Sbjct: 258 KETPLRTQ 265 >ref|YP_001207658.1| putative periplasmic-binding protein amino-acid periplasmic-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL79441.1| putative periplasmic-binding protein; putative amino-acid periplasmic-binding protein [Bradyrhizobium sp. ORS 278] Length = 265 Score = 301 bits (772), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 142/245 (57%), Positives = 186/245 (75%) Query: 2 ATSADADALKDQIAPTGKLRVAIAISPAGGAFWSTKTENGYAGVPVDLGREMAAQLGIPV 61 + SA A LK++IAPTGKLRVA+A+ PAGGAFW K+++ +GVPV+LG+ MAAQ+G+PV Sbjct: 21 SNSAAAAGLKEEIAPTGKLRVAVAVGPAGGAFWCVKSDSSVSGVPVELGKAMAAQIGVPV 80 Query: 62 EYVVHQNSGQITDAAAKNTWDITFLPKDPERETKMTFGPIYEVADATYIVKPGSTITNFA 121 E+V H NS I + AA+ +WD+TF PKD ERE K++FGP+Y+ D T+I++ G I N A Sbjct: 81 EFVEHPNSNAILEGAAQGSWDVTFFPKDAEREAKVSFGPVYDSVDTTFIIRAGMDIPNIA 140 Query: 122 TLDQDGVKVAAVNATTTMRGAIAHLKHAKVTGYQTYDEIFNLLKSGEIDAFALSRDQLNA 181 LD +G +VAA+N TT +RGA A LK A VTG+++Y+E++ LL +GEIDA L+RDQLN Sbjct: 141 ALDHEGTEVAAINDTTVLRGAKAFLKKATVTGFKSYEEVYALLAAGEIDALTLARDQLNI 200 Query: 182 MAKKIPGTHVLDETFKQTVTAVAVPLNHPLAAAFATGFMTEAVANGTLRKAYDNNGLKGS 241 MAK+IPGT VL+ETFK+T TAVAVP HP + AF T FMTEA ANG L+KAY N L S Sbjct: 201 MAKQIPGTKVLNETFKKTDTAVAVPQKHPQSLAFVTKFMTEAKANGLLKKAYGANNLSES 260 Query: 242 PVRTE 246 + T+ Sbjct: 261 TLLTQ 265 >ref|YP_001242109.1| putative periplasmic-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38203.1| amino acid ABC transporter substrate-binding protein, PAAT family [Bradyrhizobium sp. BTAi1] Length = 265 Score = 295 bits (755), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 139/246 (56%), Positives = 184/246 (74%) Query: 1 MATSADADALKDQIAPTGKLRVAIAISPAGGAFWSTKTENGYAGVPVDLGREMAAQLGIP 60 + ADA +LK++IAPTGKLRVA+A+ PAGGAFW K+++GY GVPV+LG+ MAAQ G+P Sbjct: 20 FSNGADAASLKEEIAPTGKLRVAVAVGPAGGAFWCVKSDSGYTGVPVELGKAMAAQAGVP 79 Query: 61 VEYVVHQNSGQITDAAAKNTWDITFLPKDPERETKMTFGPIYEVADATYIVKPGSTITNF 120 VE+V H N+ I + AA+ WD+TF+PKD ERE+K++FGP+Y+ D T+I++ G I N Sbjct: 80 VEFVEHPNANAIVEDAAQGAWDVTFIPKDAERESKLSFGPVYDSVDTTFIIRAGLDIPNI 139 Query: 121 ATLDQDGVKVAAVNATTTMRGAIAHLKHAKVTGYQTYDEIFNLLKSGEIDAFALSRDQLN 180 A LDQ G +VAA+N TT +R +K A VTG+++YDE+ LL +GEIDA AL+RDQL Sbjct: 140 AALDQAGHEVAAINDTTVLRATKGLMKKATVTGFKSYDEVHALLSAGEIDALALARDQLT 199 Query: 181 AMAKKIPGTHVLDETFKQTVTAVAVPLNHPLAAAFATGFMTEAVANGTLRKAYDNNGLKG 240 +AK+IPGT VL +TFK+T TAVAVPL HP + AF T FMT+A ANG L+KAY N L Sbjct: 200 ILAKQIPGTKVLSDTFKKTDTAVAVPLKHPQSQAFVTKFMTDAKANGLLKKAYGANNLSE 259 Query: 241 SPVRTE 246 S + T+ Sbjct: 260 STLFTQ 265 >ref|YP_001753979.1| extracellular solute-binding protein [Methylobacterium radiotolerans JCM 2831] gb|ACB23296.1| extracellular solute-binding protein family 3 [Methylobacterium radiotolerans JCM 2831] Length = 248 Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 87/234 (37%), Positives = 130/234 (55%), Gaps = 2/234 (0%) Query: 6 DADALKDQIAPTGKLRVAIAISPAGG-AFWSTKTENGYAGVPVDLGREMAAQLGIPVEYV 64 DA A K ++APTG LRV + +P+ G F S + G GV DLG ++A Q+G+P+ Sbjct: 9 DASA-KAELAPTGTLRVGLVEAPSAGLIFVSRAADGGLDGVTADLGADLARQVGLPLAVT 67 Query: 65 VHQNSGQITDAAAKNTWDITFLPKDPERETKMTFGPIYEVADATYIVKPGSTITNFATLD 124 + NSG A D++F+P D R + FGP Y ++TY+V GS IT+ A +D Sbjct: 68 LFPNSGAAAAALQAAAIDVSFMPVDATRRQVIDFGPGYYDLESTYLVSAGSGITDVAQVD 127 Query: 125 QDGVKVAAVNATTTMRGAIAHLKHAKVTGYQTYDEIFNLLKSGEIDAFALSRDQLNAMAK 184 + G++V A+ TTT R + L + + E +++G+ DAFALSRD L + Sbjct: 128 RPGLRVVAIEGTTTFRASARTLTRTQPLPVPSVAEAVARMRAGQADAFALSRDTLRPVVL 187 Query: 185 KIPGTHVLDETFKQTVTAVAVPLNHPLAAAFATGFMTEAVANGTLRKAYDNNGL 238 ++PG+ ++ F+QT AVAVP P A A T +M EA G +R+ +D G Sbjct: 188 QVPGSRIVAGGFQQTQVAVAVPKGRPAALARVTAWMDEAKRAGVVRRIFDARGF 241