BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0097.p (412 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopse... 563 e-158 ref|YP_001242870.1| branched chain amino acid ABC transporter pe... 559 e-157 ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodo... 554 e-155 ref|YP_485357.1| leucine/isoleucine/valine-binding protein precu... 552 e-155 ref|YP_001203126.1| branched chain amino acid ABC transporter pe... 550 e-154 >ref|YP_782697.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] gb|ABJ07717.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris BisA53] Length = 409 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 272/410 (66%), Positives = 323/410 (78%), Gaps = 5/410 (1%) Query: 1 MHHQRLSYANCVKSAALAGLLTIAVASAANAQKKYDPGATDAEIKVGNIMPYSGPASAYA 60 M H+ L A SAA A L +A ++AA AQKKYDPGA+D EIK+GNIMPYSGPASAY Sbjct: 1 MPHRALRLAAV--SAATA--LLVAASTAAFAQKKYDPGASDTEIKIGNIMPYSGPASAYG 56 Query: 61 TIGKTEAAYFNKLNSEGGINGRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFNPLGT 120 IG+TEAAYF K+N GGINGRKINF+SYDDAYSPPKAVEQARKLVESDEVLLIFN LGT Sbjct: 57 VIGRTEAAYFKKINDAGGINGRKINFVSYDDAYSPPKAVEQARKLVESDEVLLIFNSLGT 116 Query: 121 PGNTAIQKYMNSKKVPQLFVSTGAAKWNDPKNFPWTMGWQPSYQVEARIYAKYILQNYPG 180 P N+AIQKYMN+KKVPQLFV+TGA KWNDPK+FPWTMGWQP+YQ E +IYAKYIL+ P Sbjct: 117 PSNSAIQKYMNAKKVPQLFVATGATKWNDPKDFPWTMGWQPNYQSETQIYAKYILKQMPT 176 Query: 181 KTIGVLYQNDDFGKDYLIGLHDGLGDQAKKLIVVESSYETSSPTVDSQIVQIKGANPDIF 240 I VLYQNDD+GKDYL GL DGLG +A +IV+E SYETS PT+D+ IV++K DIF Sbjct: 177 SKIAVLYQNDDYGKDYLKGLKDGLGAKASSMIVMEESYETSEPTIDNHIVKLKSTGADIF 236 Query: 241 VNIATPKFAAQAIKKAAELDWHPVQFLTNVSGSIGGVMKPAGYEASQGVLSTAYLKDPKD 300 +NI TPKFAAQAIKK AE+ W P+ FL NVS S+G V+KPAG+E +Q ++S AYLKD D Sbjct: 237 INITTPKFAAQAIKKNAEIGWKPIHFLNNVSASVGSVLKPAGFENAQDIISAAYLKDVTD 296 Query: 301 TEWKNDPAMTEWRAFMTKWYPEGDLDDAATVFGYGVAKGLEQVLRQCGDNLTRENLMKQA 360 +WK+D M ++ AFM K +PEG+ D A V GYGVA+ L +VL++ GDNLTREN+MKQA Sbjct: 297 PQWKDDAGMKDFLAFMDKDFPEGNKLDNAVVVGYGVAQTLVEVLKKSGDNLTRENVMKQA 356 Query: 361 ASL-NFEIGIYLPGTKIKTGPDDYAPIEQLQMMRFKGESWERFGPIMSGE 409 ASL +F + LPG KI T D+API QLQ+ RFKGE WE FG ++S + Sbjct: 357 ASLKDFRTEVLLPGIKINTSASDFAPISQLQLQRFKGEKWELFGDVISAD 406 >ref|YP_001242870.1| branched chain amino acid ABC transporter periplasmic-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ38964.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Bradyrhizobium sp. BTAi1] Length = 407 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 261/380 (68%), Positives = 306/380 (80%), Gaps = 1/380 (0%) Query: 31 AQKKYDPGATDAEIKVGNIMPYSGPASAYATIGKTEAAYFNKLNSEGGINGRKINFISYD 90 A KK+D GA+D EIK+GNIMPYSGPASAY IGKTEAAYF K+N+EGGINGRKINF+SYD Sbjct: 25 ADKKFDTGASDTEIKIGNIMPYSGPASAYGIIGKTEAAYFKKINAEGGINGRKINFVSYD 84 Query: 91 DAYSPPKAVEQARKLVESDEVLLIFNPLGTPGNTAIQKYMNSKKVPQLFVSTGAAKWNDP 150 DAYSPPKAVEQARKLVESDEVLLIFN LGTP N+AIQKYMN+KKVPQLFV+TGA KWNDP Sbjct: 85 DAYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIQKYMNAKKVPQLFVATGATKWNDP 144 Query: 151 KNFPWTMGWQPSYQVEARIYAKYILQNYPGKTIGVLYQNDDFGKDYLIGLHDGLGDQAKK 210 NFPWTMGWQPSYQ E+RIYAKY+L+ PG I VLYQNDD+GKDYL GL DGLG +A Sbjct: 145 SNFPWTMGWQPSYQAESRIYAKYLLKEKPGAKIAVLYQNDDYGKDYLKGLKDGLGAKAAS 204 Query: 211 LIVVESSYETSSPTVDSQIVQIKGANPDIFVNIATPKFAAQAIKKAAELDWHPVQFLTNV 270 +IV+E SYET+ PT+DS IV++K D+F+NI TPKFAAQAIKK E+DW + L NV Sbjct: 205 MIVMEESYETTEPTIDSHIVKLKSTGADVFMNITTPKFAAQAIKKVKEIDWKALHLLNNV 264 Query: 271 SGSIGGVMKPAGYEASQGVLSTAYLKDPKDTEWKNDPAMTEWRAFMTKWYPEGDLDDAAT 330 S S+G V+KPAG+E SQ ++S AYLKD D +WK+DP M ++ FM K +PEGD D T Sbjct: 265 SASVGSVLKPAGFENSQEIISAAYLKDVSDPQWKDDPGMKQFLDFMAKEFPEGDKLDGGT 324 Query: 331 VFGYGVAKGLEQVLRQCGDNLTRENLMKQAASL-NFEIGIYLPGTKIKTGPDDYAPIEQL 389 V GY VA+ L QVL+QCGD+LTREN+MKQAASL NF + LPG I T D+AP+ QL Sbjct: 325 VVGYAVAQTLVQVLKQCGDDLTRENVMKQAASLRNFRTEMLLPGITINTSATDFAPVSQL 384 Query: 390 QMMRFKGESWERFGPIMSGE 409 Q+MRFKGE WE FG ++S + Sbjct: 385 QLMRFKGEKWELFGDVISAD 404 >ref|YP_004107975.1| extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] gb|ADU43242.1| Extracellular ligand-binding receptor [Rhodopseudomonas palustris DX-1] Length = 409 Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust. Identities = 260/390 (66%), Positives = 309/390 (79%), Gaps = 1/390 (0%) Query: 21 LTIAVASAANAQKKYDPGATDAEIKVGNIMPYSGPASAYATIGKTEAAYFNKLNSEGGIN 80 ++ A +S A AQKKYDPG +D EIK+GNIMPYSGPASAY IG+TEAAYF +N +GGIN Sbjct: 17 VSFAASSGALAQKKYDPGVSDTEIKIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGIN 76 Query: 81 GRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFNPLGTPGNTAIQKYMNSKKVPQLFV 140 GRKINFISYDDAYS PK VEQARKLVESDEVLLIFN LGTP N+AI KYMNSKKVPQLFV Sbjct: 77 GRKINFISYDDAYSSPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFV 136 Query: 141 STGAAKWNDPKNFPWTMGWQPSYQVEARIYAKYILQNYPGKTIGVLYQNDDFGKDYLIGL 200 +TGA KWNDPKNFPWTMGWQP+YQ E +IYAKYIL+ P I VLYQNDD+GKDYL GL Sbjct: 137 ATGATKWNDPKNFPWTMGWQPNYQSETQIYAKYILKEMPNAKIAVLYQNDDYGKDYLKGL 196 Query: 201 HDGLGDQAKKLIVVESSYETSSPTVDSQIVQIKGANPDIFVNIATPKFAAQAIKKAAELD 260 DGLG + +IV++ +YE S+PT+DS IV++K D+F+NI TPKFAAQAIKK E+ Sbjct: 197 EDGLGAKGASMIVIKEAYEISTPTIDSHIVKLKSIGADVFINITTPKFAAQAIKKMGEIG 256 Query: 261 WHPVQFLTNVSGSIGGVMKPAGYEASQGVLSTAYLKDPKDTEWKNDPAMTEWRAFMTKWY 320 W P FL NVS S+G V+KPAGYE +QGV+S AYLKD D +WK+D M E+ AFM K + Sbjct: 257 WKPTHFLNNVSASVGSVIKPAGYENAQGVISAAYLKDVSDEQWKDDAGMKEFLAFMDKEF 316 Query: 321 PEGDLDDAATVFGYGVAKGLEQVLRQCGDNLTRENLMKQAASL-NFEIGIYLPGTKIKTG 379 PEG+ D TV GYGVA+ L +VL++CGDNLTREN+MKQAASL ++ + LPG KI T Sbjct: 317 PEGNKLDGGTVVGYGVAQTLVEVLKKCGDNLTRENVMKQAASLKDYRTEVLLPGIKINTS 376 Query: 380 PDDYAPIEQLQMMRFKGESWERFGPIMSGE 409 D+AP+ QLQ+MRFKGE WE FG ++S + Sbjct: 377 ATDFAPVSQLQLMRFKGEKWELFGDVISAD 406 >ref|YP_485357.1| leucine/isoleucine/valine-binding protein precursor [Rhodopseudomonas palustris HaA2] gb|ABD06446.1| leucine/isoleucine/valine-binding protein precursor [Rhodopseudomonas palustris HaA2] Length = 409 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 259/390 (66%), Positives = 313/390 (80%), Gaps = 1/390 (0%) Query: 21 LTIAVASAANAQKKYDPGATDAEIKVGNIMPYSGPASAYATIGKTEAAYFNKLNSEGGIN 80 +T+A +S A AQKKYD GA+D EIK+GNIMPYSGPASAY IG+TEAAYF +N +GGIN Sbjct: 17 VTLAASSGALAQKKYDSGASDTEIKIGNIMPYSGPASAYGVIGRTEAAYFKMINDKGGIN 76 Query: 81 GRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFNPLGTPGNTAIQKYMNSKKVPQLFV 140 GRKINFI+YDDAYSPPK VEQARKLVESDEVLLIFN LGTP N+AI KYMNSKKVPQLFV Sbjct: 77 GRKINFITYDDAYSPPKTVEQARKLVESDEVLLIFNSLGTPPNSAIHKYMNSKKVPQLFV 136 Query: 141 STGAAKWNDPKNFPWTMGWQPSYQVEARIYAKYILQNYPGKTIGVLYQNDDFGKDYLIGL 200 +TGA KWNDPK+FPWTMGWQP+YQ E +IYAKYI++ P I VLYQNDD+GKDYL GL Sbjct: 137 ATGATKWNDPKDFPWTMGWQPNYQSETQIYAKYIMKEMPTAKIAVLYQNDDYGKDYLKGL 196 Query: 201 HDGLGDQAKKLIVVESSYETSSPTVDSQIVQIKGANPDIFVNIATPKFAAQAIKKAAELD 260 DGLG + +IV++ SYE SSPT+D+QIV++K + D+F+NI TPKFAAQAIKK E+ Sbjct: 197 EDGLGAKGASMIVMKESYEISSPTIDNQIVKLKSSGADVFINITTPKFAAQAIKKLNEVG 256 Query: 261 WHPVQFLTNVSGSIGGVMKPAGYEASQGVLSTAYLKDPKDTEWKNDPAMTEWRAFMTKWY 320 W P FL NVS S+G V+KPAGYE +QG++S AY+KD DT+WK+DP M E+ AFM K + Sbjct: 257 WKPTHFLNNVSASVGSVIKPAGYENAQGIISAAYMKDVSDTQWKDDPGMKEFLAFMDKEF 316 Query: 321 PEGDLDDAATVFGYGVAKGLEQVLRQCGDNLTRENLMKQAASL-NFEIGIYLPGTKIKTG 379 PEG+ D T+ GYGVA+ L +VL++ GD+LTR N+MKQAASL +F + LPG KI T Sbjct: 317 PEGNKLDGGTIVGYGVAQTLVEVLKKSGDDLTRANVMKQAASLKDFRTEVLLPGIKINTS 376 Query: 380 PDDYAPIEQLQMMRFKGESWERFGPIMSGE 409 D+API QLQ+MRFKGE WE FG ++S + Sbjct: 377 ATDFAPISQLQLMRFKGEKWELFGDVISAD 406 >ref|YP_001203126.1| branched chain amino acid ABC transporter periplasmic-binding protein [Bradyrhizobium sp. ORS 278] emb|CAL74889.1| Putative ABC-type branched-chain amino acid transporter, periplasmic binding protein [Bradyrhizobium sp. ORS 278] Length = 399 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/391 (67%), Positives = 306/391 (78%), Gaps = 3/391 (0%) Query: 11 CVKSAALAGLLTIAVAS--AANAQKKYDPGATDAEIKVGNIMPYSGPASAYATIGKTEAA 68 + AALA + I +AS A A KKYD G +D EIK+GNIMPYSGPASAY IGKTEAA Sbjct: 3 ITRRAALASVAAIVLASSGAFAADKKYDTGTSDTEIKIGNIMPYSGPASAYGIIGKTEAA 62 Query: 69 YFNKLNSEGGINGRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFNPLGTPGNTAIQK 128 YF K+N+EGGINGRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFN LGTP N+AIQK Sbjct: 63 YFKKINAEGGINGRKINFISYDDAYSPPKAVEQARKLVESDEVLLIFNSLGTPSNSAIQK 122 Query: 129 YMNSKKVPQLFVSTGAAKWNDPKNFPWTMGWQPSYQVEARIYAKYILQNYPGKTIGVLYQ 188 YMN+KKVPQLFV+TGA KWNDP NFPWTMGWQPSYQ E+RIYAKY+L+ P I VLYQ Sbjct: 123 YMNAKKVPQLFVATGATKWNDPSNFPWTMGWQPSYQAESRIYAKYLLKEKPDAKIAVLYQ 182 Query: 189 NDDFGKDYLIGLHDGLGDQAKKLIVVESSYETSSPTVDSQIVQIKGANPDIFVNIATPKF 248 NDD+GKDYL GL DGLG +A +IV+E SYET+ PT+DS IV++K D+F+NI TPKF Sbjct: 183 NDDYGKDYLKGLKDGLGAKAASMIVMEESYETTEPTIDSHIVKLKSTGADVFMNITTPKF 242 Query: 249 AAQAIKKAAELDWHPVQFLTNVSGSIGGVMKPAGYEASQGVLSTAYLKDPKDTEWKNDPA 308 AAQAIKK E+DW + L NVS S+G V+KPAGYE SQ ++S AYLKD D +WK+D Sbjct: 243 AAQAIKKVKEIDWKALHLLNNVSASVGSVLKPAGYENSQDIISAAYLKDVSDPQWKDDAG 302 Query: 309 MTEWRAFMTKWYPEGDLDDAATVFGYGVAKGLEQVLRQCGDNLTRENLMKQAASL-NFEI 367 M ++ FM K +PEGD D V GYGVA+ L QVL+QCGD+LTREN+MKQAASL NF Sbjct: 303 MKQFLDFMAKDFPEGDKLDGGAVVGYGVAQTLVQVLKQCGDDLTRENVMKQAASLRNFRT 362 Query: 368 GIYLPGTKIKTGPDDYAPIEQLQMMRFKGES 398 + LPG I T D+AP+ QLQ+MRFKG S Sbjct: 363 EMLLPGISINTSATDFAPVSQLQLMRFKGTS 393