BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0095.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773338.1| transcriptional regulator [Bradyrhizobium japon... 441 e-122 ref|YP_001242100.1| AraC family transcriptional regulator [Brady... 407 e-112 ref|YP_001207648.1| transcriptional regulator [Bradyrhizobium sp... 407 e-112 ref|YP_004613613.1| AraC family transcriptional regulator [Mesor... 382 e-104 ref|NP_108353.1| transcriptional regulator [Mesorhizobium loti M... 374 e-102 >ref|NP_773338.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC51963.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 288 Score = 441 bits (1133), Expect = e-122, Method: Compositional matrix adjust. Identities = 208/278 (74%), Positives = 231/278 (83%), Gaps = 2/278 (0%) Query: 1 MNPAQKALWYIESHLGAPLTLDEIAAVAGVSRFHLVRAFAEATGFSVMRYVRARRLSEAA 60 MNPAQ+ALWYIESHL P+TLDEIAA++GVSRFH+VRAFA ATG VMRYVRARRL+EAA Sbjct: 12 MNPAQRALWYIESHLAEPMTLDEIAAISGVSRFHIVRAFAAATGLPVMRYVRARRLTEAA 71 Query: 61 RELAAGAPDILSLALDADYGSHEAFTRAFRDHFGVTPETVRATTCLTTLNLQEPITMIST 120 R LA GAPDILSLAL+ADYGSHEAFTRAFRD FG TPE VRA TC L LQEPI M ST Sbjct: 72 RSLANGAPDILSLALEADYGSHEAFTRAFRDQFGTTPEAVRAATCTGHLKLQEPILMDST 131 Query: 121 ALDHIDPPRIATGKAFLVAGIGERYNHDNGRGAGIPKQWQSFHQQCAHIPRQVGNIAYGV 180 D + PPR T AFLVAGI ER + DN GA IP WQ FHQ+ A IP +VGN+AYGV Sbjct: 132 ISDTLAPPRFETATAFLVAGISERISCDN--GAIIPGMWQRFHQEVADIPARVGNVAYGV 189 Query: 181 CCNGDDAGNFDYIAGVEVGDFSDLPREFARVRIPEQKYVVFTHADHISTIRRTVNTIWNR 240 CCNGDDAGNFDYIAGVEV D+SDLPR F R+RIPEQ+Y VF H DH+++IRRTVNTIWN+ Sbjct: 190 CCNGDDAGNFDYIAGVEVSDYSDLPRRFGRIRIPEQRYAVFAHTDHVASIRRTVNTIWNQ 249 Query: 241 WLPQSGMKVADAPNFERYDEKFDASTGNGGLEIWVPVK 278 WLP SG+K ADAP+FERYDEKFD +TGNGG EIWVPV+ Sbjct: 250 WLPASGLKAADAPSFERYDEKFDPATGNGGFEIWVPVR 287 >ref|YP_001242100.1| AraC family transcriptional regulator [Bradyrhizobium sp. BTAi1] gb|ABQ38194.1| transcriptional regulator, AraC family [Bradyrhizobium sp. BTAi1] Length = 279 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 195/276 (70%), Positives = 222/276 (80%), Gaps = 2/276 (0%) Query: 2 NPAQKALWYIESHLGAPLTLDEIAAVAGVSRFHLVRAFAEATGFSVMRYVRARRLSEAAR 61 +PAQKALWYIESHL APL+LD+IAA+AGVSRFH+VRAFA ATG SV+RYVR RRLSEAAR Sbjct: 4 SPAQKALWYIESHLSAPLSLDDIAAMAGVSRFHIVRAFAAATGVSVIRYVRLRRLSEAAR 63 Query: 62 ELAAGAPDILSLALDADYGSHEAFTRAFRDHFGVTPETVRATTCLTTLNLQEPITMISTA 121 LA+GAPDIL LAL+ADYGSHEAFTRAFRD FGVTPE VRA+ L L LQEP+ M T Sbjct: 64 ALASGAPDILGLALEADYGSHEAFTRAFRDQFGVTPEKVRASASLDGLALQEPVLMDQTP 123 Query: 122 LDHIDPPRIATGKAFLVAGIGERYNHDNGRGAGIPKQWQSFHQQCAHIPRQVGNIAYGVC 181 + PR LVAG+G+R++ DN GAGIP W+ FHQ A IP + G +AYG C Sbjct: 124 RSDLAAPRFVAAGPLLVAGVGDRFSVDN--GAGIPALWRRFHQLVADIPARRGTVAYGAC 181 Query: 182 CNGDDAGNFDYIAGVEVGDFSDLPREFARVRIPEQKYVVFTHADHISTIRRTVNTIWNRW 241 CNGDDAGNFDYIAGVEV DFSDLPR F RVR+P + VFTHA HIS+IRRTV+TIWNRW Sbjct: 182 CNGDDAGNFDYIAGVEVADFSDLPRSFGRVRVPAATFAVFTHAGHISSIRRTVHTIWNRW 241 Query: 242 LPQSGMKVADAPNFERYDEKFDASTGNGGLEIWVPV 277 LPQSG +VADAPNFERYD++FD +G GGLEIW+PV Sbjct: 242 LPQSGCQVADAPNFERYDQRFDPRSGEGGLEIWLPV 277 >ref|YP_001207648.1| transcriptional regulator [Bradyrhizobium sp. ORS 278] emb|CAL79431.1| putative transcriptional regulator AraC/XylS family, with a AraC_E_bind effector binding domain [Bradyrhizobium sp. ORS 278] Length = 279 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 198/276 (71%), Positives = 223/276 (80%), Gaps = 2/276 (0%) Query: 2 NPAQKALWYIESHLGAPLTLDEIAAVAGVSRFHLVRAFAEATGFSVMRYVRARRLSEAAR 61 NPAQKALWYIESHL +PL+LDEIA VAGVSRFH+VRAFA ATG SVMRYVR RRLSEAAR Sbjct: 4 NPAQKALWYIESHLSSPLSLDEIAHVAGVSRFHIVRAFAAATGLSVMRYVRLRRLSEAAR 63 Query: 62 ELAAGAPDILSLALDADYGSHEAFTRAFRDHFGVTPETVRATTCLTTLNLQEPITMISTA 121 ELA GAPDILS+AL ADYGSHEAFTRAFRD FGVTPE+VRA L L LQEPI M T Sbjct: 64 ELANGAPDILSVALAADYGSHEAFTRAFRDQFGVTPESVRAAARLDGLALQEPILMDQTL 123 Query: 122 LDHIDPPRIATGKAFLVAGIGERYNHDNGRGAGIPKQWQSFHQQCAHIPRQVGNIAYGVC 181 LD PR T + LVAG+GER + DN GAGIP W+ F+ +P + G +AYGVC Sbjct: 124 LDDCPAPRFVTSEPLLVAGLGERVSVDN--GAGIPMLWRRFNAITHEVPARRGTVAYGVC 181 Query: 182 CNGDDAGNFDYIAGVEVGDFSDLPREFARVRIPEQKYVVFTHADHISTIRRTVNTIWNRW 241 CNGDDAGNFDY+AGVEV DFSDLPR F+RVR+P + VFTHA HIS+IRRTV+TIWNRW Sbjct: 182 CNGDDAGNFDYVAGVEVADFSDLPRTFSRVRVPPATFAVFTHAGHISSIRRTVHTIWNRW 241 Query: 242 LPQSGMKVADAPNFERYDEKFDASTGNGGLEIWVPV 277 LPQSG VADAPNFERYD++FD +G+GGLEIW+P+ Sbjct: 242 LPQSGYAVADAPNFERYDQRFDPLSGHGGLEIWLPL 277 >ref|YP_004613613.1| AraC family transcriptional regulator [Mesorhizobium opportunistum WSM2075] gb|AEH89519.1| transcriptional regulator, AraC family [Mesorhizobium opportunistum WSM2075] Length = 277 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/278 (65%), Positives = 215/278 (77%), Gaps = 2/278 (0%) Query: 1 MNPAQKALWYIESHLGAPLTLDEIAAVAGVSRFHLVRAFAEATGFSVMRYVRARRLSEAA 60 MNP +KALW++ESHL ++LD++A +GVSRFH+ RAF ATG SVM Y+RARRLSEAA Sbjct: 1 MNPTEKALWFVESHLPDAISLDDVAQSSGVSRFHVTRAFGAATGRSVMGYMRARRLSEAA 60 Query: 61 RELAAGAPDILSLALDADYGSHEAFTRAFRDHFGVTPETVRATTCLTTLNLQEPITMIST 120 R+LA GAPDIL +ALDA Y SHEAFTRAFRD FG TPE VRA +L L EPI M + Sbjct: 61 RKLAGGAPDILRVALDAGYNSHEAFTRAFRDQFGTTPELVRAEGSTKSLELVEPILMDQS 120 Query: 121 ALDHIDPPRIATGKAFLVAGIGERYNHDNGRGAGIPKQWQSFHQQCAHIPRQVGNIAYGV 180 L +++PPR T + FL+AG+GERY+ + A IP QWQ F +IP + G++AYGV Sbjct: 121 PLTNLEPPRFETSRPFLIAGLGERYSCETS--AAIPMQWQRFGPYIGNIPGETGDVAYGV 178 Query: 181 CCNGDDAGNFDYIAGVEVGDFSDLPREFARVRIPEQKYVVFTHADHISTIRRTVNTIWNR 240 C NGDD GNFDYIAGVEV DFSDLPREF+RVRIP QKY VF H +HISTIRRTVNTIWN Sbjct: 179 CVNGDDVGNFDYIAGVEVTDFSDLPREFSRVRIPAQKYAVFAHREHISTIRRTVNTIWNT 238 Query: 241 WLPQSGMKVADAPNFERYDEKFDASTGNGGLEIWVPVK 278 WLP SG +VADAP+FERY +FD +GNGGLEIW+PVK Sbjct: 239 WLPASGHEVADAPDFERYGPEFDPRSGNGGLEIWIPVK 276 >ref|NP_108353.1| transcriptional regulator [Mesorhizobium loti MAFF303099] dbj|BAB53814.1| transcriptional regulator [Mesorhizobium loti MAFF303099] Length = 277 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 181/278 (65%), Positives = 214/278 (76%), Gaps = 6/278 (2%) Query: 1 MNPAQKALWYIESHLGAPLTLDEIAAVAGVSRFHLVRAFAEATGFSVMRYVRARRLSEAA 60 MNP +KALW++ESHL ++LD++AA +GVSRFH+ RAF ATG SVM Y RARRL+EAA Sbjct: 5 MNPTEKALWFVESHLPEAISLDDVAASSGVSRFHVTRAFGAATGRSVMGYARARRLTEAA 64 Query: 61 RELAAGAPDILSLALDADYGSHEAFTRAFRDHFGVTPETVRATTCLTTLNLQEPITMIST 120 R LA GAPDILS+ALDA Y SHEAFTRAFRD FG TPE VRA TL+L EPI M + Sbjct: 65 RRLADGAPDILSVALDAGYNSHEAFTRAFRDQFGTTPELVRAQGSTKTLDLVEPILMDQS 124 Query: 121 ALDHIDPPRIATGKAFLVAGIGERYNHDNGRGAGIPKQWQSFHQQCAHIPRQVGNIAYGV 180 L +++PPR T +AG+GERY+ + A IP QWQ F +IP + G++AYGV Sbjct: 125 FLANLEPPRFETS----LAGLGERYSCETS--AAIPMQWQRFGPYIGNIPGETGDVAYGV 178 Query: 181 CCNGDDAGNFDYIAGVEVGDFSDLPREFARVRIPEQKYVVFTHADHISTIRRTVNTIWNR 240 C NGDDAGNFDYIAGVEV DFSDL REF+RVRIP QKY VF+H +HISTIRRTVNTIWN+ Sbjct: 179 CVNGDDAGNFDYIAGVEVSDFSDLSREFSRVRIPAQKYAVFSHREHISTIRRTVNTIWNK 238 Query: 241 WLPQSGMKVADAPNFERYDEKFDASTGNGGLEIWVPVK 278 WLP SG ++ADAP FERY +FD +GNGGLEIW+PVK Sbjct: 239 WLPASGHEIADAPEFERYGPEFDPRSGNGGLEIWIPVK 276