BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0094.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001238427.1| octaprenyl diphosphate synthase [Bradyrhizob... 634 e-180 ref|NP_769171.1| octaprenyl-diphosphate synthase [Bradyrhizobium... 634 e-180 ref|YP_001204117.1| octaprenyl diphosphate synthase [Bradyrhizob... 634 e-180 ref|ZP_08628682.1| octaprenyl-diphosphate synthase [Bradyrhizobi... 625 e-177 ref|YP_484709.1| farnesyltranstransferase [Rhodopseudomonas palu... 622 e-176 >ref|YP_001238427.1| octaprenyl diphosphate synthase [Bradyrhizobium sp. BTAi1] gb|ABQ34521.1| octaprenyl diphosphate synthase [Bradyrhizobium sp. BTAi1] Length = 336 Score = 634 bits (1635), Expect = e-180, Method: Compositional matrix adjust. Identities = 310/336 (92%), Positives = 324/336 (96%) Query: 1 VAVIVPFESPSNASIDGLVGLVAADMERVNATILSRTGSEVTMIPEVANHLISSGGKRLR 60 +AVIVPFESPS ASIDGLVGLVAADMERVNATILSRTGS+VTMIPEVANHLISSGGKRLR Sbjct: 1 MAVIVPFESPSGASIDGLVGLVAADMERVNATILSRTGSDVTMIPEVANHLISSGGKRLR 60 Query: 61 PMLTLAMAQLADYSGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 PMLTLAMA L Y+GDGH+KLAAAVEFMHTATLLHDDVVDESE+RRGKLSARMLWGNEAS Sbjct: 61 PMLTLAMAHLTGYAGDGHVKLAAAVEFMHTATLLHDDVVDESEMRRGKLSARMLWGNEAS 120 Query: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR Sbjct: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 Query: 181 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNVG 240 GKTAELFAAACEVGPV+A+RPKAEQTA RS GMNLGIAFQLVDDVLDYGGK+AKLGKNVG Sbjct: 181 GKTAELFAAACEVGPVLADRPKAEQTASRSFGMNLGIAFQLVDDVLDYGGKAAKLGKNVG 240 Query: 241 DDFREGKITLPVVLAFRRGNDTERKFWIRALERGEIGSADLDHAIGLMTKHRALEDTISR 300 DDFREGKITLPVVLAFRRG+D+ER FWI++LERGEI +DLDHAIGLM KHRALEDTISR Sbjct: 241 DDFREGKITLPVVLAFRRGSDSERAFWIKSLERGEISDSDLDHAIGLMNKHRALEDTISR 300 Query: 301 AQHYGAMAVDALALFPPSPMKTALEEVVAFCLARSH 336 A HYGAMAVDALALFP SPMKTALE+VVAFCLARSH Sbjct: 301 AHHYGAMAVDALALFPASPMKTALEQVVAFCLARSH 336 >ref|NP_769171.1| octaprenyl-diphosphate synthase [Bradyrhizobium japonicum USDA 110] dbj|BAC47796.1| octaprenyl-diphosphate synthase [Bradyrhizobium japonicum USDA 110] Length = 335 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 312/336 (92%), Positives = 323/336 (96%), Gaps = 1/336 (0%) Query: 1 VAVIVPFESPSNASIDGLVGLVAADMERVNATILSRTGSEVTMIPEVANHLISSGGKRLR 60 +AVIVPFE+P ASI+ LV LVA DMERVNATILSRTGS+VTMIPEVANHLISSGGKRLR Sbjct: 1 MAVIVPFETP-GASIEELVALVAGDMERVNATILSRTGSDVTMIPEVANHLISSGGKRLR 59 Query: 61 PMLTLAMAQLADYSGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 PMLTLAMA LA Y+GDGHIKLAA+VEFMHTATLLHDDVVDESE+RRGKLSARMLWGNEAS Sbjct: 60 PMLTLAMANLAGYTGDGHIKLAASVEFMHTATLLHDDVVDESEMRRGKLSARMLWGNEAS 119 Query: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR Sbjct: 120 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 179 Query: 181 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNVG 240 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKN G Sbjct: 180 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNTG 239 Query: 241 DDFREGKITLPVVLAFRRGNDTERKFWIRALERGEIGSADLDHAIGLMTKHRALEDTISR 300 DDFREGKITLPVVLAFRRGNDTER FWI+ALERGEIG DLDHAIGLM KHRALEDT+SR Sbjct: 240 DDFREGKITLPVVLAFRRGNDTERAFWIKALERGEIGDTDLDHAIGLMNKHRALEDTLSR 299 Query: 301 AQHYGAMAVDALALFPPSPMKTALEEVVAFCLARSH 336 AQHYGAMAVDALALFP SPMK+ALE+VVAFCLARSH Sbjct: 300 AQHYGAMAVDALALFPSSPMKSALEQVVAFCLARSH 335 >ref|YP_001204117.1| octaprenyl diphosphate synthase [Bradyrhizobium sp. ORS 278] emb|CAL75880.1| octaprenyl diphosphate synthase [Bradyrhizobium sp. ORS 278] Length = 336 Score = 634 bits (1634), Expect = e-180, Method: Compositional matrix adjust. Identities = 309/336 (91%), Positives = 324/336 (96%) Query: 1 VAVIVPFESPSNASIDGLVGLVAADMERVNATILSRTGSEVTMIPEVANHLISSGGKRLR 60 +AVIVPFESPS ASIDGLVGLV ADMERVNATILSRTGS+VTMIPEVANHLISSGGKRLR Sbjct: 1 MAVIVPFESPSGASIDGLVGLVTADMERVNATILSRTGSDVTMIPEVANHLISSGGKRLR 60 Query: 61 PMLTLAMAQLADYSGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 PMLTLAMA L +Y+GDGH+KLAAAVEFMHTATLLHDDVVDESE+RRGKLSARMLWGNEAS Sbjct: 61 PMLTLAMAHLTEYAGDGHVKLAAAVEFMHTATLLHDDVVDESEMRRGKLSARMLWGNEAS 120 Query: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR Sbjct: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 Query: 181 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNVG 240 GKTAELFAAACEVGPV+A+RPKAEQTA RS GMNLGIAFQLVDDVLDYGGK+AKLGKNVG Sbjct: 181 GKTAELFAAACEVGPVLADRPKAEQTASRSFGMNLGIAFQLVDDVLDYGGKAAKLGKNVG 240 Query: 241 DDFREGKITLPVVLAFRRGNDTERKFWIRALERGEIGSADLDHAIGLMTKHRALEDTISR 300 DDFREGKITLPVVLAFRRG+D+ER FWI++LERGEI +DLDHAIGLM KHRALEDTISR Sbjct: 241 DDFREGKITLPVVLAFRRGSDSERAFWIKSLERGEINDSDLDHAIGLMNKHRALEDTISR 300 Query: 301 AQHYGAMAVDALALFPPSPMKTALEEVVAFCLARSH 336 A HYGAMAVDALALFP SPMKTALE+VVAFCLARSH Sbjct: 301 AHHYGAMAVDALALFPASPMKTALEQVVAFCLARSH 336 >ref|ZP_08628682.1| octaprenyl-diphosphate synthase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08614.1| octaprenyl-diphosphate synthase [Bradyrhizobiaceae bacterium SG-6C] Length = 336 Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust. Identities = 308/336 (91%), Positives = 318/336 (94%) Query: 1 VAVIVPFESPSNASIDGLVGLVAADMERVNATILSRTGSEVTMIPEVANHLISSGGKRLR 60 +AVIVPFES S SID LV LVA DMERVN+TILSRTGSEVTMIPEVANHLISSGGKRLR Sbjct: 1 MAVIVPFESHSTPSIDRLVELVAPDMERVNSTILSRTGSEVTMIPEVANHLISSGGKRLR 60 Query: 61 PMLTLAMAQLADYSGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 PMLTLAMA L Y+GDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS Sbjct: 61 PMLTLAMANLTGYTGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 Query: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 VLVGDFLLGQAFRMMVEVGSLRALDILS+AAATIAEGEVMQLAAAKNTATTEDEYLAVIR Sbjct: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSSAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 Query: 181 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNVG 240 GKTAELFAAA EVGPVIANRPKAEQTA RS GMNLGIAFQL+DDVLDYGGK+AKLGKNVG Sbjct: 181 GKTAELFAAASEVGPVIANRPKAEQTASRSFGMNLGIAFQLIDDVLDYGGKAAKLGKNVG 240 Query: 241 DDFREGKITLPVVLAFRRGNDTERKFWIRALERGEIGSADLDHAIGLMTKHRALEDTISR 300 DDFREGKITLPVVLAFRRGND ER+FWIR LE+GEIG DLDHAIGLMTKHR LEDT+SR Sbjct: 241 DDFREGKITLPVVLAFRRGNDAEREFWIRTLEKGEIGDGDLDHAIGLMTKHRTLEDTMSR 300 Query: 301 AQHYGAMAVDALALFPPSPMKTALEEVVAFCLARSH 336 AQHYGAMAVDALALFP SPMKTALE+VVAFCLARSH Sbjct: 301 AQHYGAMAVDALALFPSSPMKTALEQVVAFCLARSH 336 >ref|YP_484709.1| farnesyltranstransferase [Rhodopseudomonas palustris HaA2] gb|ABD05798.1| Farnesyltranstransferase [Rhodopseudomonas palustris HaA2] Length = 336 Score = 622 bits (1603), Expect = e-176, Method: Compositional matrix adjust. Identities = 305/336 (90%), Positives = 318/336 (94%) Query: 1 VAVIVPFESPSNASIDGLVGLVAADMERVNATILSRTGSEVTMIPEVANHLISSGGKRLR 60 +AV+VPFE P ASID LVGLVAADMERVNATILSRTGS+VTMIPEVANHLISSGGKRLR Sbjct: 1 MAVVVPFEGPPPASIDQLVGLVAADMERVNATILSRTGSDVTMIPEVANHLISSGGKRLR 60 Query: 61 PMLTLAMAQLADYSGDGHIKLAAAVEFMHTATLLHDDVVDESELRRGKLSARMLWGNEAS 120 PMLTLAMA L Y+GDGHIKLAAAVEFMHTATLLHDDVVDESE+RRGK SARMLWGNEAS Sbjct: 61 PMLTLAMANLTGYAGDGHIKLAAAVEFMHTATLLHDDVVDESEMRRGKKSARMLWGNEAS 120 Query: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAAAATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 VLVGDFLLGQAFRMMVEVGSLRALDILSAA+ATIAEGEVMQLAAAKNTATTEDEYLAVIR Sbjct: 121 VLVGDFLLGQAFRMMVEVGSLRALDILSAASATIAEGEVMQLAAAKNTATTEDEYLAVIR 180 Query: 181 GKTAELFAAACEVGPVIANRPKAEQTACRSVGMNLGIAFQLVDDVLDYGGKSAKLGKNVG 240 GKTAELFAAACEVGP IA+RPKAEQ+ACRS GMN+GIAFQLVDDVLDYGGK+AKLGKNVG Sbjct: 181 GKTAELFAAACEVGPAIADRPKAEQSACRSFGMNIGIAFQLVDDVLDYGGKAAKLGKNVG 240 Query: 241 DDFREGKITLPVVLAFRRGNDTERKFWIRALERGEIGSADLDHAIGLMTKHRALEDTISR 300 DDFREGKITLPVVLAFRRGND+ER FWI+ALERGEI ADLD AI LMTKHRALEDTI R Sbjct: 241 DDFREGKITLPVVLAFRRGNDSERAFWIKALERGEITEADLDQAIKLMTKHRALEDTIQR 300 Query: 301 AQHYGAMAVDALALFPPSPMKTALEEVVAFCLARSH 336 A HYGAMAVDALALFP SPMKTALE+VVAFCLARSH Sbjct: 301 AHHYGAMAVDALALFPSSPMKTALEQVVAFCLARSH 336