BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0087.p (265 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003692478.1| LuxR family transcriptional regulator [Stark... 362 3e-98 ref|YP_003694582.1| LuxR family transcriptional regulator [Stark... 349 3e-94 ref|YP_001632773.1| LuxR family transcriptional regulator [Borde... 322 3e-86 ref|ZP_02926521.1| transcriptional regulator, LuxR-family protei... 118 8e-25 ref|YP_003549332.1| LuxR family transcriptional regulator [Coral... 86 7e-15 >ref|YP_003692478.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH87859.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 293 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 171/259 (66%), Positives = 210/259 (81%) Query: 4 DSKLNDEIIRLYESESNLHTLPGVLFGGVGRLVDAEVVSFTEFHRPTWDFRSLISVGDDP 63 D+ L EII LYE+E +L TLP LF GVGRL+DA+VV+++EFH + +FRSL+SV DDP Sbjct: 16 DAGLAQEIIGLYEAEPDLITLPAALFAGVGRLIDADVVTYSEFHHTSGEFRSLLSVEDDP 75 Query: 64 EVRARGMQAFAKHMHSHPFWQHDPAFYGERALRESDFFSDEEFVELPIAKEVFLPSGARR 123 RA G+ A+A+HMHSH FW++DPAF+GERALRESDFFSDEEF+ LPIA+EVFLPS AR Sbjct: 76 ARRAEGIAAYARHMHSHAFWRYDPAFFGERALRESDFFSDEEFLALPIAREVFLPSNARH 135 Query: 124 IMGIAFEHAGYVVTVVGHRVVGRPAFSDEERDRMQGFRPHILRGYRQAQERTLAALTPSD 183 IM I H YV+T+ G R +GR AFSD RDR++ FRPHI+R YRQA +RTLA LTP+D Sbjct: 136 IMSIVMRHEAYVLTINGFRTIGRTAFSDAARDRLEAFRPHIMRSYRQAFQRTLATLTPTD 195 Query: 184 RLRLAFPALTPRQIEVASWIAQGKSNEEIAGILGVGLDAVKAHVKAINSKIDSDSRRAAI 243 RLR+AFP LTPRQ+EV SWIA+GKSNE+IA IL VG+D VKAHVKAI++K+ +D R A Sbjct: 196 RLRIAFPELTPRQLEVGSWIARGKSNEDIATILDVGVDTVKAHVKAIHAKVGADGRLAIA 255 Query: 244 VIAHTTPPFADLPPLWKLG 262 VIAHT PPFA +PPLW++G Sbjct: 256 VIAHTIPPFARMPPLWRIG 274 >ref|YP_003694582.1| LuxR family transcriptional regulator [Starkeya novella DSM 506] gb|ADH89963.1| transcriptional regulator, LuxR family [Starkeya novella DSM 506] Length = 284 Score = 349 bits (895), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 161/259 (62%), Positives = 212/259 (81%) Query: 4 DSKLNDEIIRLYESESNLHTLPGVLFGGVGRLVDAEVVSFTEFHRPTWDFRSLISVGDDP 63 ++ L EII+LYE+E++L +LP VLF GVGRL+DA+VV+++EFH + +FRSL+S+ DDP Sbjct: 16 EADLPGEIIKLYEAEADLISLPEVLFAGVGRLIDADVVTYSEFHHASGEFRSLLSIEDDP 75 Query: 64 EVRARGMQAFAKHMHSHPFWQHDPAFYGERALRESDFFSDEEFVELPIAKEVFLPSGARR 123 RA M AFA+HM+SH FW+ PAF+GERALRESDFF +EEF LPIA+EVFLPS ARR Sbjct: 76 SRRAEAMAAFARHMNSHDFWRCHPAFFGERALRESDFFGEEEFATLPIAREVFLPSRARR 135 Query: 124 IMGIAFEHAGYVVTVVGHRVVGRPAFSDEERDRMQGFRPHILRGYRQAQERTLAALTPSD 183 IM I ++ YV+T+ GHRV+GR AFSD +RD ++ +R H+LR YRQA +RTLA++TP+D Sbjct: 136 IMSIVMQNEDYVLTISGHRVIGRAAFSDRQRDLLEAYRAHVLRSYRQACDRTLASMTPTD 195 Query: 184 RLRLAFPALTPRQIEVASWIAQGKSNEEIAGILGVGLDAVKAHVKAINSKIDSDSRRAAI 243 RLR+AFP LTPRQ+EVASW+A+GKSNE+IA IL VG++ +KAHVKAI++KI +D R A Sbjct: 196 RLRIAFPELTPRQLEVASWVARGKSNEDIATILDVGIETIKAHVKAIHAKIGADGRLAIA 255 Query: 244 VIAHTTPPFADLPPLWKLG 262 V+AHT PPF +PPLW++G Sbjct: 256 VMAHTVPPFTRMPPLWRIG 274 >ref|YP_001632773.1| LuxR family transcriptional regulator [Bordetella petrii DSM 12804] emb|CAP44505.1| transcriptional regulator, LuxR-family [Bordetella petrii] Length = 269 Score = 322 bits (826), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 154/258 (59%), Positives = 194/258 (75%) Query: 4 DSKLNDEIIRLYESESNLHTLPGVLFGGVGRLVDAEVVSFTEFHRPTWDFRSLISVGDDP 63 DS L EI+RLYESE +L TLPG+LF GV RL +A++VS+TE H + + RSL+SV + P Sbjct: 3 DSILLREIVRLYESEPDLLTLPGILFEGVSRLTNADLVSWTEIHFNSGELRSLLSVDEAP 62 Query: 64 EVRARGMQAFAKHMHSHPFWQHDPAFYGERALRESDFFSDEEFVELPIAKEVFLPSGARR 123 + R QA+A+H SHPFWQ DPAFYG RA+RESD FSDEEF+ LP+A+EVFLPSGARR Sbjct: 63 DRRKAAFQAYARHAGSHPFWQKDPAFYGNRAIRESDIFSDEEFMALPMAREVFLPSGARR 122 Query: 124 IMGIAFEHAGYVVTVVGHRVVGRPAFSDEERDRMQGFRPHILRGYRQAQERTLAALTPSD 183 IMG+ + Y++ + HRV+G+PAFSD ERD +Q +R H+ R YRQAQ+RT+ +TP D Sbjct: 123 IMGVLIQQGEYLLDLGAHRVIGKPAFSDAERDWLQTYRGHVHRVYRQAQQRTVEKITPED 182 Query: 184 RLRLAFPALTPRQIEVASWIAQGKSNEEIAGILGVGLDAVKAHVKAINSKIDSDSRRAAI 243 RLR AFP LT RQIE A W+AQGKSNE IA + V LD VKAH+KAI +KI ++SR A Sbjct: 183 RLRYAFPGLTQRQIETAVWLAQGKSNEAIAAAMNVSLDTVKAHLKAIFNKIGTNSRLALA 242 Query: 244 VIAHTTPPFADLPPLWKL 261 + HT PPF+ +PPLW L Sbjct: 243 RLVHTVPPFSQMPPLWTL 260 >ref|ZP_02926521.1| transcriptional regulator, LuxR-family protein [Verrucomicrobium spinosum DSM 4136] Length = 307 Score = 118 bits (296), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 77/251 (30%), Positives = 120/251 (47%), Gaps = 4/251 (1%) Query: 3 RDSKLNDEIIRLYESESNLHTLPGVLFGGVGRLVDAEVVSFTEFHRPTWDFRSLISVGDD 62 R S LN ++ LY +E L P + + L ++ + E TW R + + D Sbjct: 18 RQSLLNSRLVDLYGNEPELAQFPRLTAELLRELTISDFAVYGEVDHTTWQNRGMCT-DDS 76 Query: 63 PEVRARGMQAFAKHMHSHPFWQHDPAFYGERALRESDFFSDEEFVELPIAKEVFLPSGAR 122 P VR + +A HPF++ P +Y R L ++ S E PI ++V+ P G + Sbjct: 77 PNVR-EALNRYATTPRGHPFFEALPQYYQGRVLFAAECMSPAELAANPIIQQVYGPIGVK 135 Query: 123 RIMGIAFEHAGYVVTVVGHRVVGRPAFSDEERDRMQGFRPHILRGYRQAQERTLAALTPS 182 ++G F V+ R P F +E+R R H Y A +R + Sbjct: 136 HVLGFNFPCDTKVIAFGAMRRSSVP-FKEEDRAIATLLRQHFETLYTHASQRAARNMGLR 194 Query: 183 DRLRLAFPALTPRQIEVASWIAQGKSNEEIAGILGVGLDAVKAHVKAINSKIDSDSR-RA 241 RL L +P LTPRQ++VA W+A GKSN IA +L V VK H+++I + I ++ R A Sbjct: 195 QRLMLVYPELTPRQLDVAVWLAIGKSNPVIAQLLNVTQAGVKFHLRSIFNHIGAEDRTTA 254 Query: 242 AIVIAHTTPPF 252 A++++ P F Sbjct: 255 ALILSQAAPGF 265 >ref|YP_003549332.1| LuxR family transcriptional regulator [Coraliomargarita akajimensis DSM 45221] gb|ADE55162.1| transcriptional regulator, LuxR family [Coraliomargarita akajimensis DSM 45221] Length = 269 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 69/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%) Query: 3 RDSKLNDEIIRLYESESNLHTLPGVLFGGVGRLVDAEVVSFTEFHRPTWDFRSLISVGDD 62 + + ++ + LY+ + +L T + + + +LV E ++F + I + +D Sbjct: 2 NNERFSEAFLELYQPDLSLETYAALSYRFISKLVPNEFIAFGSLDLKGGELN--IGLSED 59 Query: 63 PEVRARGMQAFAKHMHSHPFWQHDPAFYGERALRESDFFSDEEFVELPIAKEVFLPSGAR 122 M AF M + + DP + SDFFSD F +L I EV+ G Sbjct: 60 VPAFIPSMHAFGDLMGQYDLFNWDPEIAKGKPFSRSDFFSDSSFKDLDIYAEVYRRLGID 119 Query: 123 RIMGIAFEHAGYVVTVVGHRVVGRPAFSDEERDRMQGFRPHILRGYRQAQERTLAALTPS 182 + + + G G P F+ EE+ ++ + H+ A ER+L+ +P Sbjct: 120 NHCAVHVPSSRNEINFFGIERKGGPDFTSEEKALLEAAQAHLTNARALAWERSLSNHSPI 179 Query: 183 DRLRLAFPALTPRQIEVASWIAQGKSNEEIAGILGVGLDAVKAHVKAINSKIDSDSRRAA 242 + +LA LT R+ E+ SW+A+GKSN EIA ++G+ V H++AI++K ++ SR AA Sbjct: 180 NPEKLAQHGLTTRESEILSWLAEGKSNGEIAILMGISSYRVNDHIQAIHTKTNTPSRPAA 239 Query: 243 ---IVIAHTTP 250 + A++TP Sbjct: 240 ALWAIRANSTP 250