BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0085.p         (167 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_533594.1| hypothetical protein RPC_3740 [Rhodopseudomonas...   172   2e-41
ref|YP_782751.1| hypothetical protein RPE_3844 [Rhodopseudomonas...   169   1e-40
ref|YP_317526.1| hypothetical protein Nwi_0912 [Nitrobacter wino...   169   1e-40
ref|YP_001208130.1| hypothetical protein BRADO6277 [Bradyrhizobi...   162   1e-38
ref|YP_578623.1| hypothetical protein Nham_3433 [Nitrobacter ham...   162   2e-38

>ref|YP_533594.1| hypothetical protein RPC_3740 [Rhodopseudomonas palustris BisB18]
 gb|ABD89275.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 147

 Score =  172 bits (435), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 92/114 (80%)

Query: 54  GVWLTQSGDARIKVHRCGSALCGRVVWLKEPTDKATGKPQLDDKNADPGQRARPVMGMSL 113
           GVWLTQ+GDA++KV +CG+ALCG VVWLKEP D+ATGKP +DDKN DP +  RPV+G+ +
Sbjct: 31  GVWLTQAGDAKVKVAKCGAALCGTVVWLKEPVDRATGKPAIDDKNPDPARATRPVIGLQI 90

Query: 114 FINMQPAGPNKWAGRIYNADDGKTYESSVTLVSPGTLNVRGCMGTLCAGEDWTR 167
           F +M+P  P KW+G IYNADDGKTYESS++ +  GTL V GC+G LC GE WTR
Sbjct: 91  FGDMRPVAPGKWSGHIYNADDGKTYESSISAIDAGTLKVEGCVGALCGGEAWTR 144


>ref|YP_782751.1| hypothetical protein RPE_3844 [Rhodopseudomonas palustris BisA53]
 gb|ABJ07771.1| conserved hypothetical protein [Rhodopseudomonas palustris BisA53]
          Length = 144

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 76/125 (60%), Positives = 95/125 (76%)

Query: 42  AAKASDKASDPAGVWLTQSGDARIKVHRCGSALCGRVVWLKEPTDKATGKPQLDDKNADP 101
           AA ++   S PAG WLTQ+GDAR+KV +CGSALCG +VWLK+P D ATG+PQ+DDKN DP
Sbjct: 16  AAGSAMAQSAPAGTWLTQAGDARVKVSKCGSALCGSIVWLKDPIDPATGRPQIDDKNPDP 75

Query: 102 GQRARPVMGMSLFINMQPAGPNKWAGRIYNADDGKTYESSVTLVSPGTLNVRGCMGTLCA 161
               R V G+++F +M+P+GP KW+G IYNADDGKTYESS+    P TL V GC+G+LC 
Sbjct: 76  ALAQRSVKGLTIFSDMRPSGPGKWSGHIYNADDGKTYESSLAWTGPTTLRVEGCVGSLCG 135

Query: 162 GEDWT 166
            E WT
Sbjct: 136 SETWT 140


>ref|YP_317526.1| hypothetical protein Nwi_0912 [Nitrobacter winogradskyi Nb-255]
 gb|ABA04174.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 145

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/142 (54%), Positives = 100/142 (70%), Gaps = 1/142 (0%)

Query: 26  LIVAAFHIPLLGSPADAAKASDKASDPAGVWLTQSGDARIKVHRCGSALCGRVVWLKEPT 85
           L+ + F I +L +    A A   A+DP GVWLTQ+GDA+++V RCG  LCG +VWL+ P 
Sbjct: 2   LVRSGFVIAVLAAMLSVADA-QTAADPTGVWLTQAGDAKVRVSRCGGGLCGVIVWLRNPI 60

Query: 86  DKATGKPQLDDKNADPGQRARPVMGMSLFINMQPAGPNKWAGRIYNADDGKTYESSVTLV 145
           D ATG+P +DDKN +P    RP++G+ LF  M P GPNKW+G IYNADDG TY S+V++ 
Sbjct: 61  DPATGRPAVDDKNHNPALSRRPMIGLPLFRGMSPTGPNKWSGSIYNADDGNTYASNVSVA 120

Query: 146 SPGTLNVRGCMGTLCAGEDWTR 167
            PG L V GC+G LC+GE WTR
Sbjct: 121 GPGALRVEGCVGALCSGEVWTR 142


>ref|YP_001208130.1| hypothetical protein BRADO6277 [Bradyrhizobium sp. ORS 278]
 emb|CAL79915.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 144

 Score =  162 bits (410), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 99/143 (69%), Gaps = 6/143 (4%)

Query: 25  RLIVAAFHIPLLGSPADAAKASDKASDPAGVWLTQSGDARIKVHRCGSALCGRVVWLKEP 84
           RL+  AF   ++  PA AA       DP+G WLTQ+GDA+IKV +CG+ LCG VVWLKEP
Sbjct: 6   RLVGLAFGALVIAQPAMAA------DDPSGTWLTQAGDAKIKVAKCGANLCGTVVWLKEP 59

Query: 85  TDKATGKPQLDDKNADPGQRARPVMGMSLFINMQPAGPNKWAGRIYNADDGKTYESSVTL 144
            D  TGKP +D+KN +     RP++G+ LF  + P GPNKW+G+IYNADDG++Y S +++
Sbjct: 60  MDTDTGKPAIDNKNPNRALANRPIIGLQLFDGVHPDGPNKWSGKIYNADDGQSYTSHISV 119

Query: 145 VSPGTLNVRGCMGTLCAGEDWTR 167
             P TL V GC+G LC GE WTR
Sbjct: 120 SGPDTLKVEGCVGALCGGETWTR 142


>ref|YP_578623.1| hypothetical protein Nham_3433 [Nitrobacter hamburgensis X14]
 gb|ABE64163.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 145

 Score =  162 bits (409), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/142 (52%), Positives = 98/142 (69%), Gaps = 1/142 (0%)

Query: 26  LIVAAFHIPLLGSPADAAKASDKASDPAGVWLTQSGDARIKVHRCGSALCGRVVWLKEPT 85
           L+ + F I +L     AA A   A DP G+WLTQ+GDA+++V RC   +CG VVWL+ P 
Sbjct: 2   LVRSGFAIAILAVLLSAADAQTPA-DPTGIWLTQAGDAKVRVSRCRDGICGVVVWLRSPI 60

Query: 86  DKATGKPQLDDKNADPGQRARPVMGMSLFINMQPAGPNKWAGRIYNADDGKTYESSVTLV 145
           D ATG+P +DDKN +P    RP++G+ LF  M  +GPNKW+G IYNADDG TY S+V++ 
Sbjct: 61  DPATGRPAVDDKNRNPALARRPMIGLPLFHGMSQSGPNKWSGTIYNADDGNTYASNVSVA 120

Query: 146 SPGTLNVRGCMGTLCAGEDWTR 167
            PG L V GC+G LC+GE WTR
Sbjct: 121 GPGALRVEGCVGVLCSGEMWTR 142