BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0076.p (392 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767634.1| acyl-CoA synthetase [Bradyrhizobium japonicum U... 735 0.0 ref|YP_001208678.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS ... 715 0.0 ref|YP_001236855.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi... 707 0.0 ref|YP_004111283.1| AMP-dependent synthetase and ligase [Rhodops... 696 0.0 ref|YP_488294.1| acyl-CoA synthetase [Rhodopseudomonas palustris... 692 0.0 >ref|NP_767634.1| acyl-CoA synthetase [Bradyrhizobium japonicum USDA 110] dbj|BAC46259.1| bll0994 [Bradyrhizobium japonicum USDA 110] Length = 516 Score = 735 bits (1897), Expect = 0.0, Method: Compositional matrix adjust. Identities = 349/392 (89%), Positives = 367/392 (93%) Query: 1 VVDGDSESERIVGLREATAGLPSTPIADEYAGTAMLYSSGTTGRPKGIVRPLPEQPPSQN 60 V DG ES+RIVGL E TAGLP TPIADE+ GTAMLYSSGTTGRPKGI+RPLPE+PP N Sbjct: 125 VADGPGESDRIVGLAEVTAGLPKTPIADEWLGTAMLYSSGTTGRPKGILRPLPEEPPKHN 184 Query: 61 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVVIMESFDPERYLQLVE 120 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTV+IME+FDPERYLQLVE Sbjct: 185 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVIIMETFDPERYLQLVE 244 Query: 121 KWGITHSQLVPTMFSRLLKLPEEVRARYDLSTLEIAIHAAAPCPALVKDDMIKWWGPIIH 180 +WGITH+QLVPTMFSR+LKLPEEVR RYDLS+LEIAIHAAAPCPALVKDD+IKWWGPIIH Sbjct: 245 RWGITHTQLVPTMFSRMLKLPEEVRKRYDLSSLEIAIHAAAPCPALVKDDIIKWWGPIIH 304 Query: 181 EYYGATEGLGFTACNSEEWLAHRGTVGRVLLGDLHILDENMQPCPKGTPGTVWFKTATPF 240 EYYGATEGLGFTACNSEEWL+HRGTVG+VLLGDLHILDENM+ CP GTPG VWFKTA+PF Sbjct: 305 EYYGATEGLGFTACNSEEWLSHRGTVGKVLLGDLHILDENMRECPTGTPGQVWFKTASPF 364 Query: 241 EYFNDPAKTTEARSADGSMSTVGDVGYVDDDNFLYLTDRATFMIISGGVNIYPQECENLL 300 EYFNDP KT EARSADGSMSTVGDVGYVD D FLYLTDRATFMIISGGVNIYPQECENLL Sbjct: 365 EYFNDPEKTKEARSADGSMSTVGDVGYVDADRFLYLTDRATFMIISGGVNIYPQECENLL 424 Query: 301 ITHPKVADAAVFGVPNVDLGEEVKAVVQPVDGIAPGPELAEELIAFCASSLSRQKVPRSV 360 ITHPKVADAAVFGVPN DLGEEVKAVVQP+ G+ PG LAEELIAFC SLSRQKVPRSV Sbjct: 425 ITHPKVADAAVFGVPNPDLGEEVKAVVQPMPGVVPGEALAEELIAFCGQSLSRQKVPRSV 484 Query: 361 DFEAELPRLPTGKLYKRLLRDRYWGNKTSRIV 392 DFE ELPRLPTGKLYKRLLRDRYWGNK+SRIV Sbjct: 485 DFEKELPRLPTGKLYKRLLRDRYWGNKSSRIV 516 >ref|YP_001208678.1| acyl-CoA synthetase [Bradyrhizobium sp. ORS 278] emb|CAL80463.1| putative AMP-dependent synthetase; putative long-chain-fatty-acid--CoA ligase (acyl-CoA synthetase) [Bradyrhizobium sp. ORS 278] Length = 516 Score = 715 bits (1845), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/392 (85%), Positives = 360/392 (91%) Query: 1 VVDGDSESERIVGLREATAGLPSTPIADEYAGTAMLYSSGTTGRPKGIVRPLPEQPPSQN 60 V DG E +RIVGL+EA AGLP+TPIADE GTAMLYSSGTTGRPKGI+RPLPEQPP Q Sbjct: 125 VADGPGEGDRIVGLQEAIAGLPATPIADECIGTAMLYSSGTTGRPKGILRPLPEQPPVQQ 184 Query: 61 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVVIMESFDPERYLQLVE 120 LP+FDFL KLW YREGM+YLSPAPLYHSAPQAAVNLTIR GGT +IME+FDPERYLQLVE Sbjct: 185 LPIFDFLEKLWRYREGMIYLSPAPLYHSAPQAAVNLTIRAGGTAIIMENFDPERYLQLVE 244 Query: 121 KWGITHSQLVPTMFSRLLKLPEEVRARYDLSTLEIAIHAAAPCPALVKDDMIKWWGPIIH 180 +WGITH+QLVPTMFSR+LKLPEE+R RYDLS+LEIAIHAAAPCPA VK+DMI+WWGPIIH Sbjct: 245 QWGITHTQLVPTMFSRMLKLPEEIRTRYDLSSLEIAIHAAAPCPAQVKEDMIRWWGPIIH 304 Query: 181 EYYGATEGLGFTACNSEEWLAHRGTVGRVLLGDLHILDENMQPCPKGTPGTVWFKTATPF 240 EYYGATEGLGFTAC+SE+WLAHRGTVG+VL GDLHILDE+MQPCP GT GTVWFKT +PF Sbjct: 305 EYYGATEGLGFTACDSEQWLAHRGTVGKVLFGDLHILDEHMQPCPAGTAGTVWFKTGSPF 364 Query: 241 EYFNDPAKTTEARSADGSMSTVGDVGYVDDDNFLYLTDRATFMIISGGVNIYPQECENLL 300 EYFNDP +T EARSADG+MSTVGDVGYVD D +LYLTDRATFMIISGGVNIYPQECENLL Sbjct: 365 EYFNDPERTREARSADGTMSTVGDVGYVDADGYLYLTDRATFMIISGGVNIYPQECENLL 424 Query: 301 ITHPKVADAAVFGVPNVDLGEEVKAVVQPVDGIAPGPELAEELIAFCASSLSRQKVPRSV 360 ITHPKVADAAVFGVPN DLGEEVKAV+QP+ GI P P L EELIAFC SLSRQKVPRS+ Sbjct: 425 ITHPKVADAAVFGVPNTDLGEEVKAVIQPMSGIVPSPALEEELIAFCRQSLSRQKVPRSI 484 Query: 361 DFEAELPRLPTGKLYKRLLRDRYWGNKTSRIV 392 DFE ELPRLPTGKLYKRLLRDRYWGNKTSRIV Sbjct: 485 DFETELPRLPTGKLYKRLLRDRYWGNKTSRIV 516 >ref|YP_001236855.1| acyl-CoA synthetase [Bradyrhizobium sp. BTAi1] gb|ABQ32949.1| putative AMP-dependent synthetase [Bradyrhizobium sp. BTAi1] Length = 520 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/396 (84%), Positives = 362/396 (91%), Gaps = 4/396 (1%) Query: 1 VVDGDSE----SERIVGLREATAGLPSTPIADEYAGTAMLYSSGTTGRPKGIVRPLPEQP 56 VVDG + SERIVGL EATAGLP+TPIADE GTAMLYSSGTTGRPKGI+RPLPEQP Sbjct: 125 VVDGHPDEFGASERIVGLAEATAGLPATPIADESVGTAMLYSSGTTGRPKGILRPLPEQP 184 Query: 57 PSQNLPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVVIMESFDPERYL 116 P Q LP+FDFL +LW YREGM+YLSPAPLYHSAPQAAVNLTIR GGT +IME+FDPERYL Sbjct: 185 PVQQLPIFDFLERLWRYREGMIYLSPAPLYHSAPQAAVNLTIRSGGTAIIMETFDPERYL 244 Query: 117 QLVEKWGITHSQLVPTMFSRLLKLPEEVRARYDLSTLEIAIHAAAPCPALVKDDMIKWWG 176 QLVE+WGITH+QLVPTMFSR+LKLPEEVR+RYDLS+LE+AIHAAAPCPA VK+DMI+WWG Sbjct: 245 QLVEQWGITHTQLVPTMFSRMLKLPEEVRSRYDLSSLEVAIHAAAPCPAQVKEDMIRWWG 304 Query: 177 PIIHEYYGATEGLGFTACNSEEWLAHRGTVGRVLLGDLHILDENMQPCPKGTPGTVWFKT 236 PIIHEYYGATEGLGFTAC+SE+WLAHRGTVG+VL GDLHILDE MQPCP GT GTVWFKT Sbjct: 305 PIIHEYYGATEGLGFTACDSEQWLAHRGTVGKVLFGDLHILDEAMQPCPVGTAGTVWFKT 364 Query: 237 ATPFEYFNDPAKTTEARSADGSMSTVGDVGYVDDDNFLYLTDRATFMIISGGVNIYPQEC 296 +PFEYFNDP +T +ARSADG+MSTVGDVGYVD D +LYLTDRATFMIISGGVNIYPQEC Sbjct: 365 GSPFEYFNDPERTKDARSADGTMSTVGDVGYVDADGYLYLTDRATFMIISGGVNIYPQEC 424 Query: 297 ENLLITHPKVADAAVFGVPNVDLGEEVKAVVQPVDGIAPGPELAEELIAFCASSLSRQKV 356 ENLLITHPKVADAAVFGVPN DLGEEVKAV+QP+ GI P EL EELIAFC SLSRQKV Sbjct: 425 ENLLITHPKVADAAVFGVPNPDLGEEVKAVIQPMSGIPPSAELEEELIAFCRQSLSRQKV 484 Query: 357 PRSVDFEAELPRLPTGKLYKRLLRDRYWGNKTSRIV 392 PRS+DFE ELPRLPTGKLYKRLLRDRYWGNKTSRIV Sbjct: 485 PRSIDFEKELPRLPTGKLYKRLLRDRYWGNKTSRIV 520 >ref|YP_004111283.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] gb|ADU46550.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris DX-1] Length = 516 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/392 (83%), Positives = 356/392 (90%) Query: 1 VVDGDSESERIVGLREATAGLPSTPIADEYAGTAMLYSSGTTGRPKGIVRPLPEQPPSQN 60 VVDGD ESERIVGL EAT LP TPIADE GTAMLYSSGTTGRPKGI+RPLPEQPPS+ Sbjct: 125 VVDGDGESERIVGLAEATKDLPDTPIADENLGTAMLYSSGTTGRPKGILRPLPEQPPSEP 184 Query: 61 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVVIMESFDPERYLQLVE 120 LPLF FL LW YR+GM+YLSPAPLYHSAPQAAV LTIR+GGTV+IME FDPE+YL L+E Sbjct: 185 LPLFHFLNMLWKYRDGMIYLSPAPLYHSAPQAAVGLTIRVGGTVIIMEHFDPEQYLALIE 244 Query: 121 KWGITHSQLVPTMFSRLLKLPEEVRARYDLSTLEIAIHAAAPCPALVKDDMIKWWGPIIH 180 K+ +THSQLVPTMFSR+LKLPEEVR +YDLSTLE+AIHAAAPCP VK+ MI+WWGPIIH Sbjct: 245 KYKVTHSQLVPTMFSRMLKLPEEVRKKYDLSTLEVAIHAAAPCPPQVKEQMIEWWGPIIH 304 Query: 181 EYYGATEGLGFTACNSEEWLAHRGTVGRVLLGDLHILDENMQPCPKGTPGTVWFKTATPF 240 EYYGATEGLGFTACNS EWLAHRGTVG+V+ GDLHILD+ M+PCPKGTPG +WFKTATPF Sbjct: 305 EYYGATEGLGFTACNSAEWLAHRGTVGKVMFGDLHILDDGMRPCPKGTPGQIWFKTATPF 364 Query: 241 EYFNDPAKTTEARSADGSMSTVGDVGYVDDDNFLYLTDRATFMIISGGVNIYPQECENLL 300 EYFNDP KT EARS DGSMSTVGDVGYVDDD +L+LTDRATFMIISGGVNIYPQECENLL Sbjct: 365 EYFNDPKKTQEARSDDGSMSTVGDVGYVDDDGYLHLTDRATFMIISGGVNIYPQECENLL 424 Query: 301 ITHPKVADAAVFGVPNVDLGEEVKAVVQPVDGIAPGPELAEELIAFCASSLSRQKVPRSV 360 ITHPKVADAAVFGVPN DLGEEVKAVVQPV+G+A G EL +EL+AFCA SLSRQKVPRS+ Sbjct: 425 ITHPKVADAAVFGVPNEDLGEEVKAVVQPVEGVAAGAELEQELLAFCAQSLSRQKVPRSI 484 Query: 361 DFEAELPRLPTGKLYKRLLRDRYWGNKTSRIV 392 DF E+PRLPTGKLYKRLLRD+YWGNK SRIV Sbjct: 485 DFTDEMPRLPTGKLYKRLLRDKYWGNKNSRIV 516 >ref|YP_488294.1| acyl-CoA synthetase [Rhodopseudomonas palustris HaA2] gb|ABD09383.1| AMP-dependent synthetase and ligase [Rhodopseudomonas palustris HaA2] Length = 516 Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/392 (83%), Positives = 350/392 (89%) Query: 1 VVDGDSESERIVGLREATAGLPSTPIADEYAGTAMLYSSGTTGRPKGIVRPLPEQPPSQN 60 V DGD ESERIVGL EAT GLP TP+ADE GTAMLYSSGTTGRPKGI+RPLPEQPPSQ Sbjct: 125 VADGDGESERIVGLAEATKGLPDTPVADESLGTAMLYSSGTTGRPKGILRPLPEQPPSQP 184 Query: 61 LPLFDFLTKLWHYREGMVYLSPAPLYHSAPQAAVNLTIRMGGTVVIMESFDPERYLQLVE 120 LPLF FL LW YR M+YLSPAPLYHSAPQAAV L IR GGTV+IME FDPE YL L+E Sbjct: 185 LPLFHFLNMLWKYRNDMIYLSPAPLYHSAPQAAVGLAIRDGGTVIIMEHFDPEHYLALIE 244 Query: 121 KWGITHSQLVPTMFSRLLKLPEEVRARYDLSTLEIAIHAAAPCPALVKDDMIKWWGPIIH 180 K+ +THSQLVPTMFSR+LKLPEEVR +YDLSTLE+AIHAAAPCP VK+ MI WWGPIIH Sbjct: 245 KYKVTHSQLVPTMFSRMLKLPEEVRNKYDLSTLEVAIHAAAPCPPQVKEQMIAWWGPIIH 304 Query: 181 EYYGATEGLGFTACNSEEWLAHRGTVGRVLLGDLHILDENMQPCPKGTPGTVWFKTATPF 240 EYYGATEGLGFTACNSEEWLAHRGTVG+V+ GDLHILD+ MQPCPKGTPG +WFKTATPF Sbjct: 305 EYYGATEGLGFTACNSEEWLAHRGTVGKVMFGDLHILDDRMQPCPKGTPGQIWFKTATPF 364 Query: 241 EYFNDPAKTTEARSADGSMSTVGDVGYVDDDNFLYLTDRATFMIISGGVNIYPQECENLL 300 EYFNDP KT EARSADGSMSTVGDVGYVDDD FL+LTDRATFMIISGGVNIYPQECENLL Sbjct: 365 EYFNDPGKTNEARSADGSMSTVGDVGYVDDDGFLHLTDRATFMIISGGVNIYPQECENLL 424 Query: 301 ITHPKVADAAVFGVPNVDLGEEVKAVVQPVDGIAPGPELAEELIAFCASSLSRQKVPRSV 360 ITHPKVADAAVFGVPN DLGEEVKAV+QP+ G+ P +LA+ELIAFC SLSRQKVPRS+ Sbjct: 425 ITHPKVADAAVFGVPNEDLGEEVKAVIQPIPGVDPDVDLAQELIAFCGQSLSRQKVPRSI 484 Query: 361 DFEAELPRLPTGKLYKRLLRDRYWGNKTSRIV 392 DF ELPRLPTGKLYKRLLRD+YWGNK +RIV Sbjct: 485 DFLEELPRLPTGKLYKRLLRDKYWGNKETRIV 516