BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0073.p (531 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_767633.1| ABC transporter peptide-binding protein [Bradyr... 930 0.0 ref|YP_002522871.1| putative periplasmic dipeptide transport sub... 227 4e-57 ref|YP_004631580.1| ABC transporter substrate-binding protein [O... 222 1e-55 ref|YP_002290491.1| extracellular solute-binding protein, family... 217 5e-54 ref|YP_003685944.1| family 5 extracellular solute-binding protei... 212 1e-52 >ref|NP_767633.1| ABC transporter peptide-binding protein [Bradyrhizobium japonicum USDA 110] dbj|BAC46258.1| ABC transporter peptide-binding protein [Bradyrhizobium japonicum USDA 110] Length = 532 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/515 (82%), Positives = 474/515 (92%) Query: 17 ISDVSRAAEPKSGGIFRIYHRDSPGSASIHEGATYSLNVPFMPIFNNLVIFDQHIAQNSA 76 S ++ A PK GGI R+YHRDSPG+ASIHEGATYSLNVPFMP+FNNLVI+ Q +AQNS Sbjct: 18 FSTIALAGGPKQGGILRMYHRDSPGNASIHEGATYSLNVPFMPVFNNLVIYKQDVAQNSM 77 Query: 77 STIRPELAESWAWSGDNKTLTFKLRKDVKWHDGKPFTAADVKCTFDMLMGKSQQKFRQNP 136 TI PELAESWAW DNKTLTFKLR VKWHDGKPFT+ADVKCTFDMLMGKSQQKFRQNP Sbjct: 78 DTIVPELAESWAWVNDNKTLTFKLRPGVKWHDGKPFTSADVKCTFDMLMGKSQQKFRQNP 137 Query: 137 RKSWYEQVEEVTTNGDYEASFKLKRPQPALLSLLASGYSPVYPCHVSPAEMRTKPVGTGP 196 RK+WY+QV +++T+GD E SF LKRPQP+LL+LLASGY+PVYPCHVSP +MRT P+GTGP Sbjct: 138 RKTWYDQVNDISTDGDLEVSFNLKRPQPSLLALLASGYTPVYPCHVSPGDMRTHPIGTGP 197 Query: 197 FKFVEFKANESIKLTKNPDYFKKGLPYLDGIEFTIIPNRSTAILGFVSGKFDMTFPTEVS 256 FKFVEFKANESIKLT+NPDY+++G PYLDGIE TIIPNRSTAIL FV+GKFDMTFPTEVS Sbjct: 198 FKFVEFKANESIKLTRNPDYWREGRPYLDGIELTIIPNRSTAILAFVAGKFDMTFPTEVS 257 Query: 257 IPLLKDVKSQAPNAVCVVEPNNVSTNIIINSTAPPFDNLDIRRALALALDRKAFIQIMFE 316 IPLLKDVKSQAPNAVCVVEPNNV+TNII+NS++PPFDN+DIRRA+ALALDRKAFI IMFE Sbjct: 258 IPLLKDVKSQAPNAVCVVEPNNVATNIIVNSSSPPFDNIDIRRAMALALDRKAFISIMFE 317 Query: 317 GQGDIGGTMEPAPDGLWAMPKDMLEQIPGYGPDIEKNREEARKLMQKAGYGPDKHLQIKV 376 GQGD+GGTM P P+GLW MPK+MLE IPGYGPD+ NREEA+KLMQKAGYGPDKHL +K+ Sbjct: 318 GQGDVGGTMLPQPNGLWGMPKEMLETIPGYGPDVNANREEAKKLMQKAGYGPDKHLAVKI 377 Query: 377 STRNIAVYRDPAIILIDQIKSIYIDAELDVVDTAQWFPKIARKDYSLGLNLTGNAVDEPD 436 STRNI VYRDPA+ILIDQ+KSIYID ELDVV+TA WFPKIARKDY LGLNLTGNAVD+PD Sbjct: 378 STRNIPVYRDPAVILIDQLKSIYIDGELDVVETANWFPKIARKDYMLGLNLTGNAVDDPD 437 Query: 437 QSFYENYACGSERNYTNYCNKEIEKLFDQQSEETNTDKRKKLVWEIDKKLQEDVARPIIF 496 QSFYENY+CGSERNYTNYCNKEIEKLFD QS+ET+ KRKKLVW+IDKKLQEDVARPIIF Sbjct: 438 QSFYENYSCGSERNYTNYCNKEIEKLFDVQSQETDIAKRKKLVWDIDKKLQEDVARPIIF 497 Query: 497 HARTGTCWQPYVKNVTIMSNSSYNGYRYEDVWLDK 531 HARTG+CWQPYVK VT+MSNSSYNGYRYEDVW+DK Sbjct: 498 HARTGSCWQPYVKGVTVMSNSSYNGYRYEDVWMDK 532 >ref|YP_002522871.1| putative periplasmic dipeptide transport substrate-binding protein [Thermomicrobium roseum DSM 5159] gb|ACM05076.1| putative periplasmic dipeptide transport substrate-binding protein [Thermomicrobium roseum DSM 5159] Length = 564 Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 245/483 (50%), Gaps = 26/483 (5%) Query: 27 KSGGIFRIYHRDSPGSASIHEGATYSLNVPFMPIFNNLVIFDQHIAQNSASTIRPELAES 86 + GGI R+ P + +H+ T + P L+ FD N + I P+LA Sbjct: 67 RRGGILRMNLPGDPANLDLHQATTSTDLWCVAPCLETLLEFDP----NDQTKILPDLAIR 122 Query: 87 WAWSGDNKTLTFKLRKDVKWHDGKPFTAADVKCTFDMLMGKSQQKFRQNPRKSWYEQVEE 146 W S D T TF LR+ V++HDG PFT+ DV TF ++ S + +PR ++ VE Sbjct: 123 WDISRDGLTYTFFLRQGVQFHDGSPFTSKDVLVTFQRII--SPPEGVNSPRSVFFNTVER 180 Query: 147 VTTNGDYEASFKLKRPQPALLSLLASGYSPVYPCHV--SPAEMRTKP--VGTGPFKFVEF 202 + T D F LK+P PALL +A ++ +YP H+ + A++R +GTGPFKF + Sbjct: 181 IETPDDVTVRFVLKQPDPALLYNVAIPWTGIYPAHLIEAGADLRDTKNLIGTGPFKFKSY 240 Query: 203 KANESIKLTKNPDYFKKGLPYLDGIEFTIIPNRSTAILGFVSGKFDMTFPTEVSIPLLKD 262 + +L KNP+Y+ LPYLDGI F + + S A ++G+ + + +P L Sbjct: 241 TPGVTYELEKNPNYWNPNLPYLDGIVFYPMADPSVAAQALIAGQIHLN--RGLGVPPLDL 298 Query: 263 VKSQAPNAVCVVEPNNVSTNIIINSTA-PPFDNLDIRRALALALDRKAFIQIMFEGQGDI 321 + A V + P + +++N PF + +R+A++LA+DR+A I M EG+ + Sbjct: 299 FQGHADIRVAGI-PTTLVWRLVLNGRQFEPFRDPRVRQAISLAIDREAMIAAMTEGRSVL 357 Query: 322 GGTMEPAPDGLWAMPKDMLEQIPGYGPDIEKNREEARKLMQKAGYGPDKHLQIKVSTRNI 381 G M P G WA+P+D + Q G+G D E +R++A++L +AG+ +++ Sbjct: 358 SGWMHPY--GAWALPEDRVRQARGFGKDKEADRQQAKQLFAEAGFPNGFDVELLAFALGT 415 Query: 382 AVYRDPAIILIDQIKSIYIDAELDVVDTAQWFPKIARKDYSLGLNLTGNAVDEPDQSFYE 441 V + ++ DQ+ I I + + ++ ++ +++ + L VDEP +F Sbjct: 416 PVTQS---LVADQLGQIGIRVNVQNLQLGEYVQRVVAREFQMSLGFNAPWVDEPKSTFGA 472 Query: 442 NYACGSERNYTNYCNKEIEKLFDQQSEETNTDKRKKLVWEIDKKLQED-------VARPI 494 + + T + E+ +L+ Q E + DKRK+L E+D + +D V RP+ Sbjct: 473 WITSNEQASLTGLWSDELIQLYQQIERELDIDKRKQLTHELDFRTLDDPVFGMIYVYRPV 532 Query: 495 IFH 497 I+H Sbjct: 533 IWH 535 >ref|YP_004631580.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] gb|AEI01764.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM4] gb|AEI05339.1| ABC transporter substrate-binding protein [Oligotropha carboxidovorans OM5] Length = 527 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 158/540 (29%), Positives = 268/540 (49%), Gaps = 33/540 (6%) Query: 6 ALAVAVLSVLIISDVSRAAEPKSGGIFRIYHRDSPGSASIHEGATYSLNVPFMPIFNNLV 65 ALA+ ++ +++ + A PK GG+ + P + H +++ P P +N L+ Sbjct: 7 ALALGFSALALMASGADAQTPKKGGVLKFAVGAEPPNYDCHGATSFAFIHPVRPHYNTLL 66 Query: 66 IFDQHIAQNSASTIRPELAESWAWSGDNKTLTFKLRKDVKWHDGKPFTAADVKCTFDMLM 125 FD+ + ++ +LA SW + D T TFKL+ ++K+HDG T+ADVK ++D + Sbjct: 67 KFDE----PNYPKVKGDLAASWTVAPDGLTYTFKLKPNIKFHDGSTLTSADVKASYDRIA 122 Query: 126 GKSQQKFRQNPRKSWYEQVEEVTTNGDYEASFKLKRPQPALLSLLASGYSPVYPCHVSPA 185 Q + R++ YE + + T FKLK P ++++ AS + +Y S A Sbjct: 123 HPPQGVV--SIRQAAYEDITSIETPDANTVVFKLKAPNASMITNFASPWDCIY----SAA 176 Query: 186 EMRTKP-------VGTGPFKFVEFKANESIKLTKNPDYFKKGLPYLDGIEFTIIPNRSTA 238 +++ P +GTGPFKFVE A + P+YF+K PYLDG I N + Sbjct: 177 KLKEDPKFPEKHILGTGPFKFVEHAAGSHWVGERFPEYFEKDRPYLDGFRAIFITNTAAR 236 Query: 239 ILGFVSGKFDMTFPTEVSIPLLKDVKSQAPNAVCVVEPNNVSTNIIINSTAPPFDNLDIR 298 + +G+ F + K V + P S +I N PF++ +R Sbjct: 237 VNALQAGEVLAEFRGQSPADKKKLVDALGDKVNVYESPWVCSLAVIFNVEKKPFNDARVR 296 Query: 299 RALALALDR----KAFIQIMFEGQGDIGGTMEPAPDGLWAMPKDMLEQIPGYGPDIEKNR 354 RAL+LALDR +A +I D+GG + P + A + L PG+G DI+K R Sbjct: 297 RALSLALDRWKGSEALSKIAV--VRDVGGVLRPGYE--LAASEAELTTYPGFGKDIKKAR 352 Query: 355 EEARKLMQKAGYGPDKHLQIKVSTRNI-AVYRDPAIILIDQIKSIYIDAELDVVDTAQWF 413 +EA+KL+ +AG K L+ K RN+ + Y + ++DQ + I + AE + +T + Sbjct: 353 DEAKKLLAEAGV---KDLKFKFMNRNVPSPYTPVGVFVVDQWRQIGVTAEHEQPETKAYI 409 Query: 414 PKIARKDYSLGLNLTGNAVDEPDQSFYENYACG-SERNYTNYCNKEIEKLFDQQSEETNT 472 + +Y +GL+ +AVD+P+ + + S NY+ +++I++L+++Q E + Sbjct: 410 GNLRSGNYEVGLDFACDAVDDPNLQLLKYVSSDKSTINYSRSIDRKIDELYEKQKRELDP 469 Query: 473 DKRKKLVWEIDKK-LQEDVARPIIFHARTGTCWQPYVKNVTIMSNSSYNGYRYEDVWLDK 531 KR ++ E++K L E P+I+ R W+ + MS S Y +DVWLD+ Sbjct: 470 KKRAAILREVEKHALTEAATVPVIWWNRIIVNWKQL--HGWHMSPSHYINQDLQDVWLDQ 527 >ref|YP_002290491.1| extracellular solute-binding protein, family 5 [Oligotropha carboxidovorans OM5] gb|ACI94626.1| extracellular solute-binding protein, family 5 [Oligotropha carboxidovorans OM5] Length = 510 Score = 217 bits (552), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 155/523 (29%), Positives = 258/523 (49%), Gaps = 33/523 (6%) Query: 23 AAEPKSGGIFRIYHRDSPGSASIHEGATYSLNVPFMPIFNNLVIFDQHIAQNSASTIRPE 82 A PK GG+ + P + H +++ P P +N L+ FD+ + ++ + Sbjct: 7 AQTPKKGGVLKFAVGAEPPNYDCHGATSFAFIHPVRPHYNTLLKFDE----PNYPKVKGD 62 Query: 83 LAESWAWSGDNKTLTFKLRKDVKWHDGKPFTAADVKCTFDMLMGKSQQKFRQNPRKSWYE 142 LA SW + D T TFKL+ ++K+HDG T+ADVK ++D + Q + R++ YE Sbjct: 63 LAASWTVAPDGLTYTFKLKPNIKFHDGSTLTSADVKASYDRIAHPPQGVV--SIRQAAYE 120 Query: 143 QVEEVTTNGDYEASFKLKRPQPALLSLLASGYSPVYPCHVSPAEMRTKP-------VGTG 195 + + T FKLK P ++++ AS + +Y S A+++ P +GTG Sbjct: 121 DITSIETPDANTVVFKLKAPNASMITNFASPWDCIY----SAAKLKEDPKFPEKHILGTG 176 Query: 196 PFKFVEFKANESIKLTKNPDYFKKGLPYLDGIEFTIIPNRSTAILGFVSGKFDMTFPTEV 255 PFKFVE A + P+YF+K PYLDG I N + + +G+ F + Sbjct: 177 PFKFVEHAAGSHWVGERFPEYFEKDRPYLDGFRAIFITNTAARVNALQAGEVLAEFRGQS 236 Query: 256 SIPLLKDVKSQAPNAVCVVEPNNVSTNIIINSTAPPFDNLDIRRALALALDR----KAFI 311 K V + P S +I N PF++ +RRAL+LALDR +A Sbjct: 237 PADKKKLVDALGDKVNVYESPWVCSLAVIFNVEKKPFNDARVRRALSLALDRWKGSEALS 296 Query: 312 QIMFEGQGDIGGTMEPAPDGLWAMPKDMLEQIPGYGPDIEKNREEARKLMQKAGYGPDKH 371 +I D+GG + P + A + L PG+G DI+K R+EA+KL+ +AG K Sbjct: 297 KIAV--VRDVGGVLRPGYE--LAASEAELTTYPGFGKDIKKARDEAKKLLAEAGV---KD 349 Query: 372 LQIKVSTRNI-AVYRDPAIILIDQIKSIYIDAELDVVDTAQWFPKIARKDYSLGLNLTGN 430 L+ K RN+ + Y + ++DQ + I + AE + +T + + +Y +GL+ + Sbjct: 350 LKFKFMNRNVPSPYTPVGVFVVDQWRQIGVTAEHEQPETKAYIGNLRSGNYEVGLDFACD 409 Query: 431 AVDEPDQSFYENYACG-SERNYTNYCNKEIEKLFDQQSEETNTDKRKKLVWEIDKK-LQE 488 AVD+P+ + + S NY+ +++I++L+++Q E + KR ++ E++K L E Sbjct: 410 AVDDPNLQLLKYVSSDKSTINYSRSIDRKIDELYEKQKRELDPKKRAAILREVEKHALTE 469 Query: 489 DVARPIIFHARTGTCWQPYVKNVTIMSNSSYNGYRYEDVWLDK 531 P+I+ R W+ + MS S Y +DVWLD+ Sbjct: 470 AATVPVIWWNRIIVNWKQL--HGWHMSPSHYINQDLQDVWLDQ 510 >ref|YP_003685944.1| family 5 extracellular solute-binding protein [Meiothermus silvanus DSM 9946] gb|ADH64436.1| extracellular solute-binding protein family 5 [Meiothermus silvanus DSM 9946] Length = 502 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 156/515 (30%), Positives = 254/515 (49%), Gaps = 38/515 (7%) Query: 1 MRSVQALAVAVLSVLIISDVSRAAEPKSGGIFRIYHRDSPGSASIHEGATYSLNVPFMPI 60 MR + L +A+L I ++ A P GG F+I SP H ++ V I Sbjct: 1 MRRMGWLFLAIL----IGSLAGAQNPIRGGTFQIAVDSSPAGLDPHVATAFATFVVIGNI 56 Query: 61 FNNLVIFDQHIAQNSASTIRPELAESWAWSGDNKTLTFKLRKDVKWHDGKPFTAADVKCT 120 + L D+ + +RP LAESW S D T TFKLR V +H+G+ F A DV T Sbjct: 57 YEGLTEIDEGL------RVRPALAESWKVSPDGLTYTFKLRPGVTFHNGQAFDAKDVLAT 110 Query: 121 FDMLMGKSQQKFRQNPRKSWYEQVEEVTTNGDYEASFKLKRPQPALLSLLASGYSPVYPC 180 F+ + + +P S + V+EV G E F+L +P LS LA G S V Sbjct: 111 FN----RVRDPKTGSPIASRFNLVKEVRATGPLEVVFELSQPFSPFLSELA-GLSIVPAE 165 Query: 181 HV-SPAEMRTKPVGTGPFKFVEFKANESIKLTKNPDYFKKGLPYLDGIEFTIIPNRSTAI 239 ++ S +++ + VGTGPF+F E+ + I L +NP Y+++G PYLD ++F I+P+ +T Sbjct: 166 YIASGGDLQRRAVGTGPFQFKEWVPDTYILLERNPKYYRQGRPYLDALKFNIVPDAATRQ 225 Query: 240 LGFVSGKFDMTFPTEVSIPLLKDVKSQAPNAVCVVEPNNVSTNII-INSTAPPFDNLDIR 298 +G SG + + P L AP V + E ++S +++ +N T PFDN +R Sbjct: 226 IGISSGSYHFLPNID---PSLAVTLKNAP-GVKLYESQDLSYSLLGMNVTRKPFDNPKVR 281 Query: 299 RALALALDRKAFIQIMFEGQGDIGGTMEPAPDGLWAMPKDMLEQIPGYGPDIEKNREEAR 358 AL ++DRKA +Q ++ G G GG + PA G WA P P N ++AR Sbjct: 282 EALNYSIDRKALVQAVYFGNGVPGGPLSPALKG-WASPVSAF-------PCYNTNPQKAR 333 Query: 359 KLMQKAGY--GPDKHLQIKVSTRNIAVYRDPAIILIDQIKSIYIDAELDVVDTAQWFPKI 416 +L+++AGY G D + S + + D A +L Q+ A++++++ ++ + Sbjct: 334 ELLRQAGYPNGVDFTILTLGSVKTVV---DAAQVLQAQLAPAGFRAKIEILELGKFVQEW 390 Query: 417 ARKDYSLGLNLTGNAVDEPDQSFYENYACGSERNYTNYCNKEIEKLFDQQSEETNTDKRK 476 ++ +L G + D PD + ++ G N Y + ++++L +Q T+ D R+ Sbjct: 391 RNSNFDAFASLNGGSAD-PDGYLFRTFSTGGSTNVFKYSDPQVDQLLNQGRTATSADTRR 449 Query: 477 KLVWEIDKKLQEDVARPIIFHARTGTCWQPYVKNV 511 K+ E+ KL + I H GT + +NV Sbjct: 450 KIYAELQVKL---ACQGPIAHLVYGTLFSAARENV 481