BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0066.p (199 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001862610.1| LysR family transcriptional regulator [Burkh... 274 5e-72 ref|YP_001890408.1| LysR family transcriptional regulator [Burkh... 273 1e-71 ref|YP_001312655.1| LysR family transcriptional regulator [Sinor... 264 6e-69 ref|YP_004538748.1| LysR family transcriptional regulator [Novos... 257 9e-67 ref|YP_004556541.1| LysR family transcriptional regulator [Sinor... 255 3e-66 >ref|YP_001862610.1| LysR family transcriptional regulator [Burkholderia phymatum STM815] gb|ACC75564.1| transcriptional regulator, LysR family [Burkholderia phymatum STM815] Length = 308 Score = 274 bits (700), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 132/190 (69%), Positives = 155/190 (81%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQHPL 63 YPAVSVRL MLDR V+LIDEGIDVALRIAHL DS +AI +GEVRRVV A+P YLA+HP Sbjct: 118 YPAVSVRLHMLDRPVSLIDEGIDVALRIAHLPDSTLVAIPVGEVRRVVTAAPRYLAKHPR 177 Query: 64 ISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGHG 123 I EP DLA+HQII+MTHFGLDSWSFPPA S + + V F+PRL+VN++ AAVASA EG G Sbjct: 178 IHEPGDLAEHQIISMTHFGLDSWSFPPAEGSTVPQVVTFSPRLIVNSIDAAVASAVEGRG 237 Query: 124 VTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKRY 183 VTR+FSYH+A +++DG LRI+L EH PLPVHLL P GR VPKVRAFVDFATPRL+R Sbjct: 238 VTRVFSYHVAQQVKDGHLRIVLRDSEHAPLPVHLLTPHGRLSVPKVRAFVDFATPRLRRQ 297 Query: 184 FERLSREASK 193 F++L R + Sbjct: 298 FKQLQRATDR 307 >ref|YP_001890408.1| LysR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD21037.1| transcriptional regulator, LysR family [Burkholderia phytofirmans PsJN] Length = 308 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 129/190 (67%), Positives = 159/190 (83%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQHPL 63 YPAVSVRL MLDR V+LIDEG+D+ALRIAHL DS +AI +GEVRRVVAASP YLA+HP Sbjct: 118 YPAVSVRLNMLDRPVSLIDEGMDLALRIAHLPDSTLVAIPVGEVRRVVAASPRYLAKHPP 177 Query: 64 ISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGHG 123 I++PADLA+HQII+MTHFGLDSWSFPP S I R VQFTPR +VN+++AAVASA GHG Sbjct: 178 ITDPADLAQHQIISMTHFGLDSWSFPPPNGSTIPRVVQFTPRFIVNSIQAAVASAVAGHG 237 Query: 124 VTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKRY 183 VTR+FSYH+A+++++G L+I+L +E PLPVHLL P GR VPKVRAFVDFATPRL+++ Sbjct: 238 VTRMFSYHVAEQVKEGTLKIVLSDNEPAPLPVHLLTPHGRLAVPKVRAFVDFATPRLRKH 297 Query: 184 FERLSREASK 193 F + R ++ Sbjct: 298 FTQSQRITTR 307 >ref|YP_001312655.1| LysR family transcriptional regulator [Sinorhizobium medicae WSM419] gb|ABR62722.1| transcriptional regulator, LysR family [Sinorhizobium medicae WSM419] Length = 315 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 131/191 (68%), Positives = 154/191 (80%), Gaps = 1/191 (0%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLG-EVRRVVAASPGYLAQHP 62 YP VS RL++LDR VNL+DEG+DVALRI HL DS+ I+ +LG +VRRVV ASPGYLA HP Sbjct: 118 YPTVSARLLLLDRFVNLVDEGVDVALRIGHLADSSLISTRLGGDVRRVVVASPGYLANHP 177 Query: 63 LISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGH 122 I EPADLAKHQI+A T+FGL+SWSF PA S I R VQFTPR +VN+VRAA ASA+ G Sbjct: 178 RIEEPADLAKHQILAFTNFGLESWSFTPAMGSSIPRTVQFTPRCIVNSVRAAAASAAAGR 237 Query: 123 GVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKR 182 G+TRL+SYH+A+ +RDGRL I+L EHPPLP HLLAPQGR VPKVRAFVDFA PRL+ Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLAGAEHPPLPAHLLAPQGRMSVPKVRAFVDFAAPRLRS 297 Query: 183 YFERLSREASK 193 F R++ EA K Sbjct: 298 EFARMAAEAGK 308 >ref|YP_004538748.1| LysR family transcriptional regulator [Novosphingobium sp. PP1Y] emb|CCA90781.1| LysR family transcriptional regulator [Novosphingobium sp. PP1Y] Length = 320 Score = 257 bits (656), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 123/188 (65%), Positives = 148/188 (78%) Query: 1 MADYPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLGEVRRVVAASPGYLAQ 60 M ++P VSVRL +LDR VNLIDEGID+ALRIAHL DS IAI++GEVR+VVAA+P YL Sbjct: 115 MDEFPTVSVRLHLLDRPVNLIDEGIDLALRIAHLPDSTLIAIRVGEVRKVVAAAPRYLDA 174 Query: 61 HPLISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASE 120 +P I EPADL++HQI+AMTHFG+DSW+FPP R V FTPRL VNT+RAAV SA Sbjct: 175 NPFIREPADLSQHQIVAMTHFGIDSWTFPPLVGQVANRTVHFTPRLTVNTIRAAVDSAVG 234 Query: 121 GHGVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRL 180 GHGVTR+FSYHI ++ DG L++LL DE +PVHL+AP GR VPKVRAFVDFA PRL Sbjct: 235 GHGVTRMFSYHIVPQLHDGSLQLLLTNDEPEAIPVHLVAPHGRLQVPKVRAFVDFAVPRL 294 Query: 181 KRYFERLS 188 K ++ RL+ Sbjct: 295 KAHYARLA 302 >ref|YP_004556541.1| LysR family transcriptional regulator [Sinorhizobium meliloti AK83] gb|AEG55661.1| transcriptional regulator, LysR family [Sinorhizobium meliloti AK83] Length = 310 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 125/190 (65%), Positives = 152/190 (80%), Gaps = 1/190 (0%) Query: 4 YPAVSVRLVMLDRTVNLIDEGIDVALRIAHLTDSNFIAIKLG-EVRRVVAASPGYLAQHP 62 YP VSVRL++LDR VNL+DEG+D+ALRI L DS+ I+ +LG +VRRVV ASP YLA HP Sbjct: 118 YPTVSVRLLLLDRFVNLVDEGVDIALRIGQLADSSLISTRLGGDVRRVVVASPRYLANHP 177 Query: 63 LISEPADLAKHQIIAMTHFGLDSWSFPPAAKSKIARAVQFTPRLVVNTVRAAVASASEGH 122 I EPADLAKHQI+A T+FGL+SWSF PA S + R +QFTPR +VN+VRAA ASA+ G Sbjct: 178 RIEEPADLAKHQILAFTNFGLESWSFTPAKGSSVPRTIQFTPRCIVNSVRAAAASAAAGR 237 Query: 123 GVTRLFSYHIADEIRDGRLRILLVKDEHPPLPVHLLAPQGRFDVPKVRAFVDFATPRLKR 182 G+TRL+SYH+A+ +RDGRL I+L EHPPLP HL+APQGR VPKVRAFVDFA PRL+ Sbjct: 238 GLTRLYSYHVAEYVRDGRLEIVLADAEHPPLPAHLIAPQGRMSVPKVRAFVDFAAPRLRS 297 Query: 183 YFERLSREAS 192 F R++ EA Sbjct: 298 EFARMAAEAG 307