BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0065.p (303 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774232.1| transcriptional regulator [Bradyrhizobium japon... 477 e-133 ref|YP_578474.1| LysR family transcriptional regulator [Nitrobac... 448 e-124 ref|YP_002498231.1| LysR family transcriptional regulator [Methy... 375 e-102 ref|YP_002974788.1| LysR family transcriptional regulator [Rhizo... 371 e-101 ref|YP_766934.1| LysR family transcriptional regulator [Rhizobiu... 369 e-100 >ref|NP_774232.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52857.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA 110] Length = 303 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 218/303 (71%), Positives = 261/303 (86%) Query: 1 MDRLTSLTAFVRVVDSGGFSAAGRKLNMSTTTVSNHVQSLEDRLGARLLNRTTRKVSLTE 60 MDRLTSL F RVV++GGFSAA RKLNMSTT VSNHVQ+LEDRLG RLL RTTR+V+LTE Sbjct: 1 MDRLTSLEVFSRVVETGGFSAAARKLNMSTTMVSNHVQALEDRLGVRLLQRTTRRVNLTE 60 Query: 61 VGQAYYDRCVQILADIEQADDIAGAQQSVPRGTLRIFTNTHLVQFLSPAVAEFLASYPEV 120 +G+AYYDRCVQILADIEQADDIA QSVPRGTLR+ TH+V F++P VA+ L++YPE+ Sbjct: 61 IGKAYYDRCVQILADIEQADDIASELQSVPRGTLRVHVATHMVPFVAPVVAKLLSAYPEL 120 Query: 121 KVDLTIGERNADLIDENYDLAVRMVPPPDSSLIVRTIATWRHVLCCSHGYIEQHGKPTLL 180 K+DL +GE + DLI+E YD+A+RM PPPDSSLIVR++ATWRHVLCCSH YIE+HG+ L Sbjct: 121 KIDLRMGEADVDLIEEGYDVALRMTPPPDSSLIVRSLATWRHVLCCSHEYIEKHGRVQKL 180 Query: 181 ADLSARNCMRHANYPYGDEWRFADRKGTPAAVRVSGNLISNSGETLKLAALAGVGVFLAA 240 +L+A NC RH NYP+GDEWRF DRKGTPA+VR+SG+ ++NSGE L+ AL G V L A Sbjct: 181 DELAAHNCGRHLNYPFGDEWRFLDRKGTPASVRISGSFVTNSGEALRKVALGGAAVCLMA 240 Query: 241 GFLVRDELESGQLVRLLPEYRPVELTMNAVYPHRHHLSAKVRTFIDLLVRHATEQQKLIN 300 GFL++D+LE+G+LVRLLPEYR VEL+MNAVYPH+HHLSAKVRTFID+LV H+ EQQKLIN Sbjct: 241 GFLIQDDLEAGRLVRLLPEYRTVELSMNAVYPHKHHLSAKVRTFIDMLVAHSAEQQKLIN 300 Query: 301 PYS 303 PYS Sbjct: 301 PYS 303 >ref|YP_578474.1| LysR family transcriptional regulator [Nitrobacter hamburgensis X14] gb|ABE64014.1| transcriptional regulator, LysR family [Nitrobacter hamburgensis X14] Length = 303 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 210/301 (69%), Positives = 249/301 (82%) Query: 1 MDRLTSLTAFVRVVDSGGFSAAGRKLNMSTTTVSNHVQSLEDRLGARLLNRTTRKVSLTE 60 MDRLT LTAFVRVV++GGFSAAGR+LNMSTT VSNH+Q+LEDRLG RL NRTTRKVSLTE Sbjct: 1 MDRLTGLTAFVRVVETGGFSAAGRRLNMSTTMVSNHIQALEDRLGVRLFNRTTRKVSLTE 60 Query: 61 VGQAYYDRCVQILADIEQADDIAGAQQSVPRGTLRIFTNTHLVQFLSPAVAEFLASYPEV 120 VG+ YY+RCVQILADIEQADDIAGA Q+ PRGTLRI TH+VQF++P +A++L SYP+V Sbjct: 61 VGKTYYERCVQILADIEQADDIAGALQTKPRGTLRIHCATHIVQFVAPILADYLKSYPDV 120 Query: 121 KVDLTIGERNADLIDENYDLAVRMVPPPDSSLIVRTIATWRHVLCCSHGYIEQHGKPTLL 180 +LTI E D+I E +DL+VR+ PPPDSSLIVR++ATWRHVLCCS Y+ +HG L Sbjct: 121 TANLTIAEHAVDVIAEGFDLSVRLTPPPDSSLIVRSLATWRHVLCCSPEYLTEHGPLLQL 180 Query: 181 ADLSARNCMRHANYPYGDEWRFADRKGTPAAVRVSGNLISNSGETLKLAALAGVGVFLAA 240 ADL+ NC+RHA YPY ++W F D G +VRVSGNLI+NSGETL+ AAL GVGVFLAA Sbjct: 181 ADLAGHNCLRHALYPYENDWHFTDTTGKTVSVRVSGNLITNSGETLRAAALRGVGVFLAA 240 Query: 241 GFLVRDELESGQLVRLLPEYRPVELTMNAVYPHRHHLSAKVRTFIDLLVRHATEQQKLIN 300 GFLV D+L SG+LV LLP+Y PVE MN VYPHRHHLSAKVR FIDLL +H+ + Q+L+N Sbjct: 241 GFLVTDDLPSGRLVPLLPDYTPVEFAMNVVYPHRHHLSAKVRMFIDLLAQHSADHQRLMN 300 Query: 301 P 301 P Sbjct: 301 P 301 >ref|YP_002498231.1| LysR family transcriptional regulator [Methylobacterium nodulans ORS 2060] gb|ACL57928.1| transcriptional regulator, LysR family [Methylobacterium nodulans ORS 2060] Length = 306 Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/300 (60%), Positives = 227/300 (75%) Query: 1 MDRLTSLTAFVRVVDSGGFSAAGRKLNMSTTTVSNHVQSLEDRLGARLLNRTTRKVSLTE 60 MDRLTSLT F RVV++GGFSAA R+LNMS T VS HVQ+LEDRLGARLLNRTTRKVSLTE Sbjct: 1 MDRLTSLTVFGRVVEAGGFSAAARRLNMSVTMVSKHVQALEDRLGARLLNRTTRKVSLTE 60 Query: 61 VGQAYYDRCVQILADIEQADDIAGAQQSVPRGTLRIFTNTHLVQFLSPAVAEFLASYPEV 120 VGQAYY+R QILA++++AD IA A + PRG LR+ T H+ +F++P + E+LA YP V Sbjct: 61 VGQAYYERSSQILAELDEADRIASALHATPRGRLRLHTAGHISRFMAPVLREYLARYPAV 120 Query: 121 KVDLTIGERNADLIDENYDLAVRMVPPPDSSLIVRTIATWRHVLCCSHGYIEQHGKPTLL 180 VDLT+G+R DLI++ YDLA+R PPPDS LIVR + WRHVL C+ Y++ H P Sbjct: 121 TVDLTVGDRMVDLIEDGYDLAIRTTPPPDSGLIVRRLTPWRHVLTCAPNYLDAHPAPFQP 180 Query: 181 ADLSARNCMRHANYPYGDEWRFADRKGTPAAVRVSGNLISNSGETLKLAALAGVGVFLAA 240 DL+ NC+R+A YPYGDEW F G P AV+V+GN++SNS + L+L AL G GVFLA Sbjct: 181 GDLAHHNCLRYAFYPYGDEWHFESSDGGPTAVKVTGNMVSNSADLLRLLALDGSGVFLAP 240 Query: 241 GFLVRDELESGQLVRLLPEYRPVELTMNAVYPHRHHLSAKVRTFIDLLVRHATEQQKLIN 300 FLV +++E+G LVRLLPEY+PVE +NA+YPHR HLS KVR+F+DLL E + ++ Sbjct: 241 TFLVGEDVEAGSLVRLLPEYKPVEFAINAIYPHRRHLSTKVRSFLDLLSERFAEHRHWVD 300 >ref|YP_002974788.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS55249.1| transcriptional regulator, LysR family [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 300 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 166/300 (55%), Positives = 222/300 (74%) Query: 1 MDRLTSLTAFVRVVDSGGFSAAGRKLNMSTTTVSNHVQSLEDRLGARLLNRTTRKVSLTE 60 MDRLTSLT F RVV+ GGFSAA R+LNMS T V NHVQSLEDRLG RLLNRTTRKVSLTE Sbjct: 1 MDRLTSLTVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60 Query: 61 VGQAYYDRCVQILADIEQADDIAGAQQSVPRGTLRIFTNTHLVQFLSPAVAEFLASYPEV 120 G+ YY+R +QILA++++AD AGA + PRGTL+++T++ +V+FL P V EF+ YP + Sbjct: 61 TGKYYYERSLQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLPVVGEFMELYPSI 120 Query: 121 KVDLTIGERNADLIDENYDLAVRMVPPPDSSLIVRTIATWRHVLCCSHGYIEQHGKPTLL 180 +D ++GER D+I++ YDL +R VPPPDSSL+ R + WRH+L CS Y E H P Sbjct: 121 SLDFSVGERMVDMIEDGYDLVMRTVPPPDSSLVARKLTPWRHMLVCSPVYFESHPMPKTP 180 Query: 181 ADLSARNCMRHANYPYGDEWRFADRKGTPAAVRVSGNLISNSGETLKLAALAGVGVFLAA 240 A+++ NC+++A YPYGDEWRF D +G +V++SGN++SNS E L+ L G G+FLA Sbjct: 181 AEVADHNCLQYAYYPYGDEWRFEDGEGKKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240 Query: 241 GFLVRDELESGQLVRLLPEYRPVELTMNAVYPHRHHLSAKVRTFIDLLVRHATEQQKLIN 300 F+V D++ G+LV+++P+YRP+E +NAVYP+R HL KVR FIDLL E +K + Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPIEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKWMT 300 >ref|YP_766934.1| LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] emb|CAK06825.1| putative LysR family transcriptional regulator [Rhizobium leguminosarum bv. viciae 3841] Length = 300 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 165/299 (55%), Positives = 221/299 (73%) Query: 1 MDRLTSLTAFVRVVDSGGFSAAGRKLNMSTTTVSNHVQSLEDRLGARLLNRTTRKVSLTE 60 MDRLTSL F RVV+ GGFSAA R+LNMS T V NHVQSLEDRLG RLLNRTTRKVSLTE Sbjct: 1 MDRLTSLMVFGRVVECGGFSAAARRLNMSVTMVGNHVQSLEDRLGVRLLNRTTRKVSLTE 60 Query: 61 VGQAYYDRCVQILADIEQADDIAGAQQSVPRGTLRIFTNTHLVQFLSPAVAEFLASYPEV 120 G+ YY+R QILA++++AD AGA + PRGTL+++T++ +V+FL P V+EF+ YP + Sbjct: 61 TGKYYYERSSQILAELDEADRTAGALSTTPRGTLKVYTSSAIVRFLLPVVSEFMELYPSI 120 Query: 121 KVDLTIGERNADLIDENYDLAVRMVPPPDSSLIVRTIATWRHVLCCSHGYIEQHGKPTLL 180 +D ++GER D+I++ YDL +R VPPPDSSL+ R + WRH+L CS Y + H P Sbjct: 121 SLDFSVGERMVDMIEDGYDLVMRTVPPPDSSLVARKLTPWRHMLVCSPAYFQSHPMPKTP 180 Query: 181 ADLSARNCMRHANYPYGDEWRFADRKGTPAAVRVSGNLISNSGETLKLAALAGVGVFLAA 240 A+++ NC+++A YPYGDEWRF D +G +V++SGN++SNS E L+ L G G+FLA Sbjct: 181 AEVADHNCLQYAYYPYGDEWRFEDGEGNKESVKISGNVVSNSAEMLRFLTLTGRGIFLAP 240 Query: 241 GFLVRDELESGQLVRLLPEYRPVELTMNAVYPHRHHLSAKVRTFIDLLVRHATEQQKLI 299 F+V D++ G+LV+++P+YRPVE +NAVYP+R HL KVR FIDLL E +K + Sbjct: 241 SFVVFDDIAEGRLVKIMPDYRPVEFNINAVYPNRSHLPTKVRLFIDLLAERFAEHRKWM 299