BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0061.p (278 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_569220.1| hypothetical protein RPD_2084 [Rhodopseudomonas... 275 8e-72 ref|NP_948143.1| hypothetical protein RPA2800 [Rhodopseudomonas ... 258 9e-67 ref|YP_004109023.1| hypothetical protein Rpdx1_2704 [Rhodopseudo... 241 1e-61 ref|YP_823764.1| beta-lactamase [Candidatus Solibacter usitatus ... 139 6e-31 ref|YP_828285.1| beta-lactamase [Candidatus Solibacter usitatus ... 130 2e-28 >ref|YP_569220.1| hypothetical protein RPD_2084 [Rhodopseudomonas palustris BisB5] gb|ABE39319.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5] Length = 277 Score = 275 bits (702), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 152/283 (53%), Positives = 195/283 (68%), Gaps = 13/283 (4%) Query: 1 MRDFRDAKTMAQTLREALGAKSIPLTHSDSLELIAKLFGQRDWNTLAARIQAAG-----G 55 MRDFRDAK MAQTLREAL AKS+ + HS+SLEL+A++ G +DWN LAARIQ+ G G Sbjct: 1 MRDFRDAKAMAQTLREALNAKSLTINHSESLELVARVLGFQDWNVLAARIQSDGPPSRHG 60 Query: 56 SADVPASAQQSPPGAVRQEIAVATAVLDRYAGFYQLSEQAVLGVMREDHHLAVQLTGQRA 115 D + RQE+ V A+LDRY GFY LSEQAV+ + R+ L +LTGQ Sbjct: 61 EVDNTNRVK-------RQEVHVDAAILDRYVGFYGLSEQAVMTISRDGDQLISRLTGQPD 113 Query: 116 VAFFAESQTEFFAREVDAQISFVIAADGQATSLILHQNG-DKPMPRIDAASAKQIADRTA 174 V + ES+T+FFA+ VDAQISF +A L+LHQNG + PM RIDAA A++I D + Sbjct: 114 VPLYGESKTKFFAKIVDAQISFATNKSSRADLLVLHQNGLEIPMKRIDAAEAERIEDLVS 173 Query: 175 ERVKNQSPASGTEAAVRRLIEGVASGQPDYVDMTPALAAATREQLPHLQPFLADLGAIES 234 ++VKNQSP+ GTE A+RRL +G+ + +P+Y +M P LA ATR+QLP L L++ G IES Sbjct: 174 DKVKNQSPSPGTEPALRRLFDGLRTNKPNYEEMVPPLAEATRKQLPKLHSDLSEAGPIES 233 Query: 235 TRFLGVGAQGEDVYSVRHANGASHWRIALDATGTISTAWVSAG 277 RF+GVG G DVY V+H + +WRI LD+ G ISTAWVS G Sbjct: 234 IRFVGVGGGGVDVYFVQHQHSTLYWRIGLDSHGLISTAWVSPG 276 >ref|NP_948143.1| hypothetical protein RPA2800 [Rhodopseudomonas palustris CGA009] emb|CAE28242.1| unknown protein [Rhodopseudomonas palustris CGA009] Length = 269 Score = 258 bits (658), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 144/278 (51%), Positives = 188/278 (67%), Gaps = 12/278 (4%) Query: 1 MRDFRDAKTMAQTLREALGAKSIPLTHSDSLELIAKLFGQRDWNTLAARIQAAGGSADVP 60 MRDFRDAK MAQTLREA+ K+ LT S+SLELIAK+ G ++WN L+A +Q+AG Sbjct: 2 MRDFRDAKAMAQTLREAIKPKA-ELTRSESLELIAKVLGCQNWNVLSAAVQSAG------ 54 Query: 61 ASAQQSPPGAVRQEIAVATAVLDRYAGFYQLSEQAVLGVMREDHHLAVQLTGQRAVAFFA 120 + + R+E+ + A+LDRY GFY+L+ Q V+ + RE+ L +L+GQ V FA Sbjct: 55 ----EPTRSSGREEVRLDAAILDRYVGFYELANQGVMTISRENGRLVSRLSGQPGVPLFA 110 Query: 121 ESQTEFFAREVDAQISFVIAADGQATSLILHQNG-DKPMPRIDAASAKQIADRTAERVKN 179 ES T FFA+ VDAQISFV + G+A SL+LHQNG PMPRIDA A++I R AE++ + Sbjct: 111 ESSTRFFAKVVDAQISFVTDSSGEAQSLVLHQNGLVIPMPRIDADEARRIEQRLAEKLTS 170 Query: 180 QSPASGTEAAVRRLIEGVASGQPDYVDMTPALAAATREQLPHLQPFLADLGAIESTRFLG 239 P++GTE A+RRLI+G+ SGQP Y +MT ALA ATR+QL L + + GA S F+G Sbjct: 171 HRPSAGTEDALRRLIDGIRSGQPCYDEMTEALANATRQQLAKLHEEIGEAGAARSVEFVG 230 Query: 240 VGAQGEDVYSVRHANGASHWRIALDATGTISTAWVSAG 277 VG G DVY V+H +WRI LD G ISTAWV+ G Sbjct: 231 VGNGGVDVYLVQHERRPLYWRIGLDGRGAISTAWVAPG 268 >ref|YP_004109023.1| hypothetical protein Rpdx1_2704 [Rhodopseudomonas palustris DX-1] gb|ADU44290.1| hypothetical protein Rpdx1_2704 [Rhodopseudomonas palustris DX-1] Length = 259 Score = 241 bits (614), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/269 (50%), Positives = 180/269 (66%), Gaps = 12/269 (4%) Query: 10 MAQTLREALGAKSIPLTHSDSLELIAKLFGQRDWNTLAARIQAAGGSADVPASAQQSPPG 69 MAQTLREA+ K+ LT S+SLELIA++ G ++WN L+A +QAAGG+A Q S P Sbjct: 1 MAQTLREAIKPKA-ELTRSESLELIARVLGCKNWNVLSAAVQAAGGTA------QNSEP- 52 Query: 70 AVRQEIAVATAVLDRYAGFYQLSEQAVLGVMREDHHLAVQLTGQRAVAFFAESQTEFFAR 129 QE+ + AVLDRY GFY+L+E V+ + R D L +LTGQ V FAES FFA+ Sbjct: 53 ---QEVLLDAAVLDRYVGFYELAEHGVMTIRRADGRLVSRLTGQPDVPLFAESSKRFFAK 109 Query: 130 EVDAQISFVIAADGQATSLILHQNG-DKPMPRIDAASAKQIADRTAERVKNQSPASGTEA 188 VDAQISFV G A SL+LHQNG D PMPRIDA A++I + +++ + P+ GTEA Sbjct: 110 IVDAQISFVTDVSGVAQSLVLHQNGLDIPMPRIDADRARRIEQQLTQKLSSNRPSPGTEA 169 Query: 189 AVRRLIEGVASGQPDYVDMTPALAAATREQLPHLQPFLADLGAIESTRFLGVGAQGEDVY 248 A+RRLI+G+ +G+P Y MT +A ATR+QLP L +++ G + S F+GVG G DVY Sbjct: 170 ALRRLIDGLRTGEPGYDAMTEMVANATRQQLPALHKEISEAGGVRSIEFVGVGNGGVDVY 229 Query: 249 SVRHANGASHWRIALDATGTISTAWVSAG 277 V+H +WRI+LD G ISTAWV+ G Sbjct: 230 LVQHERRPLYWRISLDGRGAISTAWVAPG 258 >ref|YP_823764.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076] gb|ABJ83479.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076] Length = 562 Score = 139 bits (349), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 85/207 (41%), Positives = 125/207 (60%), Gaps = 7/207 (3%) Query: 72 RQEIAVATAVLDRYAGFYQLSEQAVLGVMREDHHLAVQLTGQRAVAFFAESQTEFFAREV 131 R+EI + L RY G YQ++ + V E + L +L Q V+ F ES T FF + V Sbjct: 351 RKEITLDPKQLARYVGAYQMTGGPAMLVTLEGNQLLSKLGNQNPVSIFPESPTLFFLKVV 410 Query: 132 DAQISFVIAADGQA--TSLILHQNGDKPM-PRIDAASAKQIADRTA---ERVKNQSPASG 185 DAQ+ F + D Q+ + + LHQNG + + R+D A++K++AD A +R+K+Q+ A G Sbjct: 411 DAQLEFAMP-DPQSPPSKVTLHQNGREIVGKRLDEAASKRLADAAAATAKRIKDQTAAPG 469 Query: 186 TEAAVRRLIEGVASGQPDYVDMTPALAAATREQLPHLQPFLADLGAIESTRFLGVGAQGE 245 +EAA+R++I+ V G+PDY M+ LA ATR+QLP LQ +A LGA++S F VG G Sbjct: 470 SEAALRKMIQDVRLGKPDYAGMSSGLADATRQQLPQLQSDIARLGALQSLTFKSVGPAGP 529 Query: 246 DVYSVRHANGASHWRIALDATGTISTA 272 D+Y + NG+ +RI L G I A Sbjct: 530 DIYQAKFENGSLEYRIWLGPDGKIDAA 556 >ref|YP_828285.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076] gb|ABJ88000.1| beta-lactamase [Candidatus Solibacter usitatus Ellin6076] Length = 574 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 106/203 (52%), Gaps = 12/203 (5%) Query: 73 QEIAVATAVLDRYAGFYQLSEQAVLGVMREDHHLAVQLTGQRAVAFFAESQTEFFAREVD 132 +EI + LDRY G YQ+ ++ + R+ + +LTGQ F ES+ +FF + VD Sbjct: 366 KEITLDAKALDRYVGTYQMDRYVLMSMSRDGQRMYTELTGQPKFEVFPESERKFFLKVVD 425 Query: 133 AQISFVIAADGQATSLILHQNG-DKPMPRIDAASAKQIAD-------RTAERVKNQSPAS 184 AQ+ F D A + LHQNG D R+ AK+ AD A R K Q + Sbjct: 426 AQLIF----DEDAQRVTLHQNGNDIAARRLTEVEAKRAADAIEAHKADIASRFKEQKQSP 481 Query: 185 GTEAAVRRLIEGVASGQPDYVDMTPALAAATREQLPHLQPFLADLGAIESTRFLGVGAQG 244 GTEAAVRR + + +G Y MT A AAA R+ P L+ +A G ++S +F GVG G Sbjct: 482 GTEAAVRRSVTELQTGAAKYELMTDAFAAAARKSWPPLKAVMAQFGGLQSVKFTGVGPGG 541 Query: 245 EDVYSVRHANGASHWRIALDATG 267 D+Y V+ + WRI LD G Sbjct: 542 ADIYEVQFEKAKTEWRIMLDEDG 564