BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0058.p (378 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002498362.1| pyridoxal-5'-phosphate-dependent protein sub... 547 e-153 ref|YP_004227144.1| pyridoxal-5'-phosphate-dependent protein sub... 510 e-142 ref|YP_004232681.1| threonine synthase [Acidovorax avenae subsp.... 509 e-142 ref|YP_968538.1| L-threonine synthase [Acidovorax citrulli AAC00... 501 e-139 ref|YP_001777047.1| pyridoxal-5'-phosphate-dependent protein sub... 496 e-138 >ref|YP_002498362.1| pyridoxal-5'-phosphate-dependent protein subunit beta [Methylobacterium nodulans ORS 2060] gb|ACL58059.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Methylobacterium nodulans ORS 2060] Length = 375 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 255/331 (77%), Positives = 294/331 (88%) Query: 1 MSAPSYIDPLNGKLYPLDIPRWCSDEGKPLLITPLPGISRDDIDRGTRSLWRYRAALPVE 60 M+ PSYIDP GKLYPLD+PRWCSD+ PLL+TP PGISRDDI+ TRSLWRYRAALPV+ Sbjct: 1 MTPPSYIDPRTGKLYPLDVPRWCSDDRTPLLVTPGPGISRDDIESRTRSLWRYRAALPVD 60 Query: 61 IRQPITMGEGCTPAVEKAWDELRPHFKLEWFNPTASFKDRGTTVMLSLLRQLGVDAVLED 120 I PITMGEGCTP V++ W +LRP FKLEWFNPT SFKDRG++VMLS LRQ+GVDAVLED Sbjct: 61 IADPITMGEGCTPLVQRPWGDLRPFFKLEWFNPTGSFKDRGSSVMLSFLRQIGVDAVLED 120 Query: 121 SSGNGGASVSAYGAAGGMRVKILAPATTSPMKVAQMHAFGAEVQLVEGPREGSEAEAIRQ 180 SSGNGG+S++ +GAAGG+RVKILAPA TSP K+AQ+ A+GAEVQLVEGPRE SEAEAIRQ Sbjct: 121 SSGNGGSSMAGFGAAGGVRVKILAPAYTSPAKIAQVRAYGAEVQLVEGPREESEAEAIRQ 180 Query: 181 SKQIFYSSHNWQPFFLQGTKSLAYEIWEDFGFTAPDNVIMPVGAGSSLLGCYIGFKELLA 240 S Q FY+SHNWQPFFL+GTKSLAYE+WEDFGF PDN+I+PVGAGSSLLGC GF+EL+ Sbjct: 181 SGQTFYASHNWQPFFLEGTKSLAYELWEDFGFKVPDNIIIPVGAGSSLLGCAFGFRELMK 240 Query: 241 AGQITRLPRLFAAQPLNCSPVDASFAAGVDTPIDRAVRKTIAEGTAIKHPLRLKQMIAAL 300 AGQIT+LPRLF AQPLNCSP+DASF AGVDTP+ R V KTIAEGTAIKHPLRL+++IAAL Sbjct: 241 AGQITKLPRLFVAQPLNCSPIDASFQAGVDTPLTREVHKTIAEGTAIKHPLRLREIIAAL 300 Query: 301 KESGGGTVAIPEDGIVAALKRLARSGLFVEP 331 +ESGGGT+A+ E+ I+AAL+RLAR GLF EP Sbjct: 301 RESGGGTIALTEEEIIAALRRLARQGLFAEP 331 >ref|YP_004227144.1| pyridoxal-5'-phosphate-dependent protein subunit beta [Burkholderia sp. CCGE1001] gb|ADX54084.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Burkholderia sp. CCGE1001] Length = 385 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 232/325 (71%), Positives = 276/325 (84%) Query: 6 YIDPLNGKLYPLDIPRWCSDEGKPLLITPLPGISRDDIDRGTRSLWRYRAALPVEIRQPI 65 Y++PL+G YPLD PRWCSD+ +PLLI+PL GISRDDIDR RS WRYRA+LPVEI PI Sbjct: 5 YVEPLSGTTYPLDTPRWCSDDRRPLLISPLAGISRDDIDRHLRSQWRYRASLPVEIVSPI 64 Query: 66 TMGEGCTPAVEKAWDELRPHFKLEWFNPTASFKDRGTTVMLSLLRQLGVDAVLEDSSGNG 125 +MGEGCTP V+KAW E RPHFKLEWF+PT+SFKDRGTTVMLS+LRQ GV +VLEDSSGNG Sbjct: 65 SMGEGCTPLVQKAWGEHRPHFKLEWFSPTSSFKDRGTTVMLSMLRQQGVTSVLEDSSGNG 124 Query: 126 GASVSAYGAAGGMRVKILAPATTSPMKVAQMHAFGAEVQLVEGPREGSEAEAIRQSKQIF 185 GASV+AYGAAG MRVKILAPA SP K+AQM A+GAEVQLV+GPR+ E EA+RQS IF Sbjct: 125 GASVAAYGAAGAMRVKILAPAYASPAKIAQMRAYGAEVQLVDGPRQACEDEAVRQSASIF 184 Query: 186 YSSHNWQPFFLQGTKSLAYEIWEDFGFTAPDNVIMPVGAGSSLLGCYIGFKELLAAGQIT 245 Y+SHNWQPFFL+GTKS+ YEIWED F APDN++MP GAGS++LGCY+ F EL+ AGQI+ Sbjct: 185 YASHNWQPFFLEGTKSVGYEIWEDLNFQAPDNIVMPAGAGSNVLGCYLAFSELMRAGQIS 244 Query: 246 RLPRLFAAQPLNCSPVDASFAAGVDTPIDRAVRKTIAEGTAIKHPLRLKQMIAALKESGG 305 ++PRLF QPLNCSP+DASF AGV TP+ R VRKT++EGTAI HPLRL Q++ A++E+GG Sbjct: 245 KMPRLFVCQPLNCSPIDASFQAGVTTPVAREVRKTVSEGTAIAHPLRLAQVVNAVRETGG 304 Query: 306 GTVAIPEDGIVAALKRLARSGLFVE 330 TVA+ E+ IV AL+R+AR GL E Sbjct: 305 TTVAVEEEAIVEALRRIARLGLLPE 329 >ref|YP_004232681.1| threonine synthase [Acidovorax avenae subsp. avenae ATCC 19860] gb|ADX44114.1| Threonine synthase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 375 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 233/330 (70%), Positives = 280/330 (84%) Query: 1 MSAPSYIDPLNGKLYPLDIPRWCSDEGKPLLITPLPGISRDDIDRGTRSLWRYRAALPVE 60 M+ YIDP +G+ YPLD+PRWCSD+ KPLLITP PGISRDDIDR RS WRYRA+LP++ Sbjct: 1 MTTSLYIDPASGRTYPLDVPRWCSDDRKPLLITPQPGISRDDIDRTCRSQWRYRASLPLD 60 Query: 61 IRQPITMGEGCTPAVEKAWDELRPHFKLEWFNPTASFKDRGTTVMLSLLRQLGVDAVLED 120 + +PI+MGEGCTP V+K W RP+FKLEWF+PT+SFKDRGTTVMLS+LRQ GVDAVLED Sbjct: 61 VARPISMGEGCTPLVQKEWGAHRPYFKLEWFHPTSSFKDRGTTVMLSVLRQQGVDAVLED 120 Query: 121 SSGNGGASVSAYGAAGGMRVKILAPATTSPMKVAQMHAFGAEVQLVEGPREGSEAEAIRQ 180 SSGNGGASVSAYGAAGGMRVKILAPA S K+AQM A+GAEVQLVEGPR+ E EA+RQ Sbjct: 121 SSGNGGASVSAYGAAGGMRVKILAPAYASKPKIAQMRAYGAEVQLVEGPRQACEDEAVRQ 180 Query: 181 SKQIFYSSHNWQPFFLQGTKSLAYEIWEDFGFTAPDNVIMPVGAGSSLLGCYIGFKELLA 240 S+ IFYSSHNWQPFFL+GTK++ YEIWED F APDN++MP GAGS++LGC++ F ELL Sbjct: 181 SEHIFYSSHNWQPFFLEGTKAIGYEIWEDLNFRAPDNIVMPAGAGSNVLGCFMAFSELLR 240 Query: 241 AGQITRLPRLFAAQPLNCSPVDASFAAGVDTPIDRAVRKTIAEGTAIKHPLRLKQMIAAL 300 AGQI ++PRLF QPLNCSP+DASF AGV TP+ R VRKT+AEGTAI HPLRL+++++A+ Sbjct: 241 AGQIAKMPRLFVCQPLNCSPIDASFQAGVTTPVAREVRKTVAEGTAITHPLRLRELVSAV 300 Query: 301 KESGGGTVAIPEDGIVAALKRLARSGLFVE 330 + +GG TVA+ E IV ALK++AR+GL E Sbjct: 301 QATGGVTVALQEQAIVGALKKVARTGLLPE 330 >ref|YP_968538.1| L-threonine synthase [Acidovorax citrulli AAC00-1] gb|ABM30764.1| L-threonine synthase [Acidovorax citrulli AAC00-1] Length = 375 Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust. Identities = 228/330 (69%), Positives = 276/330 (83%) Query: 1 MSAPSYIDPLNGKLYPLDIPRWCSDEGKPLLITPLPGISRDDIDRGTRSLWRYRAALPVE 60 M+ YIDP +G+ YPLD+PRWCSD+ KPLL+TP PG+SRDDIDR RS WRYRA+LP++ Sbjct: 1 MTTSLYIDPASGRTYPLDVPRWCSDDRKPLLVTPQPGMSRDDIDRTCRSQWRYRASLPLD 60 Query: 61 IRQPITMGEGCTPAVEKAWDELRPHFKLEWFNPTASFKDRGTTVMLSLLRQLGVDAVLED 120 + +PI+MGEGCTP V+K W RP+FKLEWF+PT SFKDRGTTVMLS+LRQ GVDAVLED Sbjct: 61 VARPISMGEGCTPLVQKEWGAHRPYFKLEWFHPTGSFKDRGTTVMLSVLRQQGVDAVLED 120 Query: 121 SSGNGGASVSAYGAAGGMRVKILAPATTSPMKVAQMHAFGAEVQLVEGPREGSEAEAIRQ 180 SSGNGGASVSAYGAAGGMRVKILAPA S K+AQM A+GAEVQLV+GPR+ E EA+RQ Sbjct: 121 SSGNGGASVSAYGAAGGMRVKILAPAYASKPKIAQMRAYGAEVQLVDGPRQACEDEAVRQ 180 Query: 181 SKQIFYSSHNWQPFFLQGTKSLAYEIWEDFGFTAPDNVIMPVGAGSSLLGCYIGFKELLA 240 S IFYSSHNWQPFFL+GTK++ YEIWED F APDN++MP GAGS++LGC++ F ELL Sbjct: 181 SAHIFYSSHNWQPFFLEGTKAIGYEIWEDLNFRAPDNIVMPAGAGSNVLGCFMAFSELLR 240 Query: 241 AGQITRLPRLFAAQPLNCSPVDASFAAGVDTPIDRAVRKTIAEGTAIKHPLRLKQMIAAL 300 AGQI ++PRLF QPLNCSP+DASF AGV TP+ R VRKT+AEGTAI HPLRL+++++A+ Sbjct: 241 AGQIAKMPRLFVCQPLNCSPIDASFQAGVTTPVAREVRKTVAEGTAIAHPLRLRELVSAV 300 Query: 301 KESGGGTVAIPEDGIVAALKRLARSGLFVE 330 + +GG TVA+ E IV A ++ AR+GL E Sbjct: 301 QVTGGATVALQEQAIVDAFRKAARTGLLPE 330 >ref|YP_001777047.1| pyridoxal-5'-phosphate-dependent protein subunit beta [Burkholderia cenocepacia MC0-3] gb|ACA92557.1| Pyridoxal-5'-phosphate-dependent protein beta subunit [Burkholderia cenocepacia MC0-3] Length = 381 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 227/327 (69%), Positives = 271/327 (82%) Query: 4 PSYIDPLNGKLYPLDIPRWCSDEGKPLLITPLPGISRDDIDRGTRSLWRYRAALPVEIRQ 63 P Y++PL+G YPLD PRWCSD+ +PLLI+P GISRDDIDR RS WRYRA+LPVEI Sbjct: 3 PHYVEPLSGTTYPLDTPRWCSDDRRPLLISPQAGISRDDIDRHLRSQWRYRASLPVEIVS 62 Query: 64 PITMGEGCTPAVEKAWDELRPHFKLEWFNPTASFKDRGTTVMLSLLRQLGVDAVLEDSSG 123 PI+MGEGCTP V+K W + RP+FKLEWF+PT+SFKDRGTTVMLS+LRQ G+ +VLEDSSG Sbjct: 63 PISMGEGCTPLVQKTWGDHRPYFKLEWFSPTSSFKDRGTTVMLSMLRQQGIASVLEDSSG 122 Query: 124 NGGASVSAYGAAGGMRVKILAPATTSPMKVAQMHAFGAEVQLVEGPREGSEAEAIRQSKQ 183 NGGASV+AYGAAG MRVKILAPA SP K+AQM A+GAEVQLV+GPR+ E EA+RQS Sbjct: 123 NGGASVAAYGAAGAMRVKILAPAYASPAKIAQMRAYGAEVQLVDGPRQACEDEAVRQSAS 182 Query: 184 IFYSSHNWQPFFLQGTKSLAYEIWEDFGFTAPDNVIMPVGAGSSLLGCYIGFKELLAAGQ 243 IFY+SHNWQPFFL+GTKS+ YEIWED F APDN++MP G GS++LGCY+ F EL+ AGQ Sbjct: 183 IFYASHNWQPFFLEGTKSIGYEIWEDLHFRAPDNIVMPAGVGSNVLGCYLAFSELMRAGQ 242 Query: 244 ITRLPRLFAAQPLNCSPVDASFAAGVDTPIDRAVRKTIAEGTAIKHPLRLKQMIAALKES 303 I ++PRLF QPLNCSP+DASF AGV TP+ R VRKT++EGTAI HPLRL Q++ A++E+ Sbjct: 243 IDKMPRLFVCQPLNCSPIDASFQAGVTTPVAREVRKTVSEGTAIAHPLRLAQVVNAVRET 302 Query: 304 GGGTVAIPEDGIVAALKRLARSGLFVE 330 GG TVA+ E IV AL R+AR GL E Sbjct: 303 GGTTVAVEEAAIVDALTRIARLGLLPE 329