BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0052.p (455 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004611404.1| histidine kinase [Mesorhizobium opportunistu... 504 e-141 ref|NP_106047.1| two-component sensor kinase [Mesorhizobium loti... 504 e-141 ref|NP_771443.1| two-component hybrid sensor and regulator [Brad... 415 e-114 ref|YP_782360.1| periplasmic sensor signal transduction histidin... 410 e-112 ref|YP_004110018.1| integral membrane sensor signal transduction... 401 e-109 >ref|YP_004611404.1| histidine kinase [Mesorhizobium opportunistum WSM2075] gb|AEH87310.1| histidine kinase [Mesorhizobium opportunistum WSM2075] Length = 453 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 258/448 (57%), Positives = 323/448 (72%), Gaps = 5/448 (1%) Query: 2 RPRSLTWRLVGRLAGLQAVTLTLLIL-VIGAVAIGLLRAGLLIGEYEGSTLDTLRDALTR 60 RPRSL W LV R+A LQ LTL+I+ ++GA +L GL+ +YE T+D L DA+ R Sbjct: 5 RPRSLKWSLVLRIALLQCAMLTLIIVGILGA----MLATGLIPHDYEDGTMDVLADAVAR 60 Query: 61 NEAGRLMLRETPELAALRAEHADLWFIVRDAEGQQLSEGMVPTQLAPITSALDHVSEARL 120 + +G+L+L ETP++A LR+ DLWFI+RD +GQ+L EG VPT P LD +S+AR+ Sbjct: 61 DASGKLVLNETPDMAKLRSGVPDLWFIIRDRQGQRLQEGTVPTIFQPFAGLLDTISDARI 120 Query: 121 KWNAAETARPAGLVKWVDTPAGRLQILTGTYGELSMWRALESTPLLFLNMILPIVVLMTL 180 + A P G ++W DT AG +QI TGT G LS+ R L+ P FL ILP+ LM L Sbjct: 121 DQAIGQAAPPGGKIRWTDTAAGNVQIFTGTKGGLSLMRLLQQAPQFFLQGILPLAGLMAL 180 Query: 181 ATLVATPFVVRRAMTGLAQVAAQAERIDIDQRGVQLPLDTVPVEIVPLVKAINAALGRLD 240 ATL ATP+VVR A++GL AA+A RID+DQRG QLPL VP+E+ PLVKA+NAAL RLD Sbjct: 181 ATLFATPWVVRGALSGLGHAAAEAGRIDVDQRGAQLPLKDVPLEVAPLVKAVNAALSRLD 240 Query: 241 KGYERHRRFLAAAAHELRTPIAILSARVASLQAGLEKTRLLEDATRLSVLAGQLLDLQRL 300 KGYERH+RFL AAHELRTP+AIL+ R+A+L A E+ RLL+DA RLS L QLLDLQRL Sbjct: 241 KGYERHKRFLTDAAHELRTPVAILNTRLAALPATPERARLLQDAARLSTLTDQLLDLQRL 300 Query: 301 DQQTDTFVEVDLVGIARQVVLDLAPLAFAAGYEMSFEQEDEAVVVSGDHTSLERALTNLV 360 D+Q +F +VDLV IAR V++DLAP+AF+AGYEMSFE E E V SGD T++ERA+TNLV Sbjct: 301 DRQVTSFEKVDLVAIARSVIVDLAPMAFSAGYEMSFEPERETVFASGDRTAIERAVTNLV 360 Query: 361 QNAIDHGQRRGTILVRVTTAGRIEVHDDGNGIPPDEREQIFEPFRRLHPGGRGAGLGLDL 420 QNAI+HG R G I V + IEV D+G G+P ERE++FEPF RL P GAGLGL+L Sbjct: 361 QNAIEHGGRSGKITVSIAAPAVIEVRDEGGGVPLSERERVFEPFYRLRPQDHGAGLGLNL 420 Query: 421 VQTIMRLHGGRIEVDRAPSGGACMRMVF 448 VQ IM++HGGRIE+ GAC RM F Sbjct: 421 VQEIMQVHGGRIEILDGRPNGACFRMSF 448 >ref|NP_106047.1| two-component sensor kinase [Mesorhizobium loti MAFF303099] dbj|BAB51833.1| two-component sensor kinase [Mesorhizobium loti MAFF303099] Length = 453 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 266/448 (59%), Positives = 326/448 (72%), Gaps = 5/448 (1%) Query: 2 RPRSLTWRLVGRLAGLQAVTLTLLIL-VIGAVAIGLLRAGLLIGEYEGSTLDTLRDALTR 60 RPRSL W LV R+A LQ LTL+I+ ++GA LL GL+ +YE T+D L DA+ R Sbjct: 5 RPRSLKWSLVLRIALLQCAMLTLIIVGILGA----LLATGLIPHDYEDGTMDVLADAVAR 60 Query: 61 NEAGRLMLRETPELAALRAEHADLWFIVRDAEGQQLSEGMVPTQLAPITSALDHVSEARL 120 + G+L+LRET +L LR+E DLWFI+RD GQ+L EG VP P LD +S+AR+ Sbjct: 61 DAGGKLVLRETSDLTKLRSEVPDLWFIIRDKPGQRLQEGTVPAIFQPFAELLDTISDARI 120 Query: 121 KWNAAETARPAGLVKWVDTPAGRLQILTGTYGELSMWRALESTPLLFLNMILPIVVLMTL 180 + E+A P ++W +T AG +QI TGT G LS+ R L P FL ILP+ LM L Sbjct: 121 DNSIGESAPPDAKIRWTETAAGNVQIFTGTKGGLSLLRLLGQAPQFFLQGILPLAGLMAL 180 Query: 181 ATLVATPFVVRRAMTGLAQVAAQAERIDIDQRGVQLPLDTVPVEIVPLVKAINAALGRLD 240 ATL ATP+VVR A++GL AA+AERIDIDQRGVQLPL VP E+ PLVKA+NAAL RLD Sbjct: 181 ATLFATPWVVRGALSGLGHAAAEAERIDIDQRGVQLPLKDVPKEVTPLVKAVNAALARLD 240 Query: 241 KGYERHRRFLAAAAHELRTPIAILSARVASLQAGLEKTRLLEDATRLSVLAGQLLDLQRL 300 KGYERH+RFL AAHELRTP+AIL+ R+ASL A E+ RLL+DA RLS L QLLDLQRL Sbjct: 241 KGYERHKRFLTDAAHELRTPVAILNTRLASLPATPERARLLQDAARLSTLTDQLLDLQRL 300 Query: 301 DQQTDTFVEVDLVGIARQVVLDLAPLAFAAGYEMSFEQEDEAVVVSGDHTSLERALTNLV 360 D+QT F +VDLV IAR V++DLAP+AF+AGYEMSFE E E V +GD T++ERA+TN+V Sbjct: 301 DRQTTPFEKVDLVAIARGVIVDLAPMAFSAGYEMSFEPERETVFATGDRTAIERAVTNIV 360 Query: 361 QNAIDHGQRRGTILVRVTTAGRIEVHDDGNGIPPDEREQIFEPFRRLHPGGRGAGLGLDL 420 QNAI+HG R G I V VT + IEV D+G+G+PPDERE+IFEPF RL P GAGLGL+L Sbjct: 361 QNAIEHGGRAGKITVSVTASAVIEVRDEGDGVPPDERERIFEPFYRLRPQDHGAGLGLNL 420 Query: 421 VQTIMRLHGGRIEVDRAPSGGACMRMVF 448 VQ IM+LHGGRI++ GAC RM F Sbjct: 421 VQEIMQLHGGRIDILDGKPSGACFRMSF 448 >ref|NP_771443.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC50068.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 458 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 222/413 (53%), Positives = 283/413 (68%), Gaps = 3/413 (0%) Query: 39 AGLLIGEY-EGSTLDTLRDALTRNEAGRLMLRETPELAALRAEHADLWFIVRDAEGQQLS 97 +GL++ E E +D ++ ALTR+ G L +R TPEL LR+E DLWF+VRD +G L+ Sbjct: 40 SGLVLAERDEDRVIDVVQHALTRDAQGGLTVRPTPELRQLRSETPDLWFLVRDRQGHSLA 99 Query: 98 EGMVPTQLAPITSALDHVSEARLKWNAAETA--RPAGLVKWVDTPAGRLQILTGTYGELS 155 EG VP + A I LD +S+ARL W E +PA +K VDT AG +Q++T T G L+ Sbjct: 100 EGAVPAEFAAIGGGLDQISQARLGWQLFEDDPRKPAARLKRVDTEAGNVQVITATQGRLT 159 Query: 156 MWRALESTPLLFLNMILPIVVLMTLATLVATPFVVRRAMTGLAQVAAQAERIDIDQRGVQ 215 +AL T L FL + LP ++LM AT +ATP +VRRA GL A QA RIDI QRG + Sbjct: 160 GAKALVMTSLAFLGIALPGLLLMGTATFIATPMIVRRAFRGLDTTADQARRIDIHQRGAR 219 Query: 216 LPLDTVPVEIVPLVKAINAALGRLDKGYERHRRFLAAAAHELRTPIAILSARVASLQAGL 275 L ++ +P+E+VPLV A+N AL RLD+GY RH+RF+A AAHELRTPIAIL+ R+ SL G Sbjct: 220 LSVERIPLEVVPLVTAVNDALARLDQGYARHKRFVADAAHELRTPIAILNTRLESLAPGP 279 Query: 276 EKTRLLEDATRLSVLAGQLLDLQRLDQQTDTFVEVDLVGIARQVVLDLAPLAFAAGYEMS 335 +KTRLLEDA RL+ LA QLLD+QRLD+ F VDLV +A+ DLAPLA A GYE++ Sbjct: 280 DKTRLLEDAARLATLAEQLLDIQRLDRCGHPFARVDLVRVAQGAAADLAPLAIAGGYELA 339 Query: 336 FEQEDEAVVVSGDHTSLERALTNLVQNAIDHGQRRGTILVRVTTAGRIEVHDDGNGIPPD 395 + + GD +LERALTNLVQNAI HG RRGTI +RV+ IEV D+G GIP Sbjct: 340 LDAPTTPIETIGDAAALERALTNLVQNAIQHGPRRGTIGIRVSRPASIEVTDEGPGIPVG 399 Query: 396 EREQIFEPFRRLHPGGRGAGLGLDLVQTIMRLHGGRIEVDRAPSGGACMRMVF 448 +REQIFEPF RL P RGAGLGL++V+ I++LHGG + V P GGAC R+ Sbjct: 400 QREQIFEPFYRLTPLDRGAGLGLNMVREIVQLHGGHVSVTDGPDGGACFRITL 452 >ref|YP_782360.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ07380.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 454 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/450 (52%), Positives = 304/450 (67%), Gaps = 8/450 (1%) Query: 3 PR-SLTWRLVGRLAGLQAVTL-TLLILVIGAVAIGLLRAGLLIG-EYEGSTLDTLRDALT 59 PR SL W LV RL LQA+ L TL ++ IGAV G G ++ E E T+D +RDA+ Sbjct: 5 PRTSLRWLLVRRLVALQAMILATLTVVWIGAVWAG----GFVVPPEPEDQTIDAIRDAVA 60 Query: 60 RNEAGRLMLRETPELAALRAEHADLWFIVRDAEGQQLSEGMVPTQLAPITSALDHVSEAR 119 R+E+G L LR+TP LA A + WF+VRD G +S G VP + A I ALD +AR Sbjct: 61 RDESGGLTLRQTPMLARQLAALPEPWFLVRDKSGHSVSRGEVPAEFARIGDALDAFGQAR 120 Query: 120 LKWNAAETARPAGLVKWVDTPAGRLQILTGTYGELSMWRALESTPLLFLNMILPIVVLMT 179 L W A E R A ++W+D P G+LQIL G G + R L +++ILP+ ++M Sbjct: 121 LGWTAGEAPRGAARMRWIDAPGGKLQILAGAGGRVPFHRFASVVAALLVSIILPVSIVMG 180 Query: 180 LATLVATPFVVRRAMTGLAQVAAQAERIDIDQRGVQLPLDTVPVEIVPLVKAINAALGRL 239 LATL+ATP VVRR++ GLA AA+AE IDID+RG QLPLD VP EIVPLV+A+N AL RL Sbjct: 181 LATLIATPMVVRRSLAGLATAAAEAEAIDIDRRGNQLPLDLVPSEIVPLVRAVNDALRRL 240 Query: 240 DKGYERHRRFLAAAAHELRTPIAILSARVASLQAGLEKTRLLEDATRLSVLAGQLLDLQR 299 D+G+ER FLA AAHE+RTPIAIL R+ SL G + RLLED RLS LA QLLD++R Sbjct: 241 DEGFERRELFLANAAHEVRTPIAILQTRIESLDPGPQTARLLEDLKRLSTLADQLLDVER 300 Query: 300 LDQQTDTFVEVDLVGIARQVVLDLAPLAFAAGYEMSFEQEDEAVVVSGDHTSLERALTNL 359 L Q +V +DLV IAR+ DLAPLA AAGYE++FE + + + GD +LERA+ NL Sbjct: 301 LGQTAAPWVAIDLVDIARRTTADLAPLAIAAGYEIAFENTVDVLTMPGDEGALERAIANL 360 Query: 360 VQNAIDHGQRRGTILVRVTTAGRIEVHDDGNGIPPDEREQIFEPFRRLHPGGRGAGLGLD 419 +QNAI +G RRG I++RV +A + V D+G G+P +RE++FEPF R+ PG RGAGLGL+ Sbjct: 361 IQNAIQYGGRRGRIVIRV-SASELSVIDEGPGVPSADRERVFEPFYRVSPGTRGAGLGLN 419 Query: 420 LVQTIMRLHGGRIEVDRAPSGGACMRMVFA 449 LV+ I RLHGGR+E+ +P+G M A Sbjct: 420 LVREIARLHGGRVEIKDSPTGAHVAIMFGA 449 >ref|YP_004110018.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] gb|ADU45285.1| integral membrane sensor signal transduction histidine kinase [Rhodopseudomonas palustris DX-1] Length = 454 Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust. Identities = 233/450 (51%), Positives = 297/450 (66%), Gaps = 8/450 (1%) Query: 3 PR-SLTWRLVGRLAGLQAVTLTLLILV-IGAVAIGLLRAGLLIG-EYEGSTLDTLRDALT 59 PR SL W LV RL LQA+ L +L +V IG GL G ++ E E T+D +RDA+ Sbjct: 5 PRTSLRWLLVRRLVALQAMMLAILTVVWIG----GLWAGGFVVPPEPEDQTIDAIRDAVA 60 Query: 60 RNEAGRLMLRETPELAALRAEHADLWFIVRDAEGQQLSEGMVPTQLAPITSALDHVSEAR 119 R+E+G L LR+TP LA A +LWF VRD G +S G VP + A I ALD V +AR Sbjct: 61 RDESGGLTLRQTPMLARQSAAMPELWFQVRDKSGHSISRGEVPAEFARIGDALDAVGQAR 120 Query: 120 LKWNAAETARPAGLVKWVDTPAGRLQILTGTYGELSMWRALESTPLLFLNMILPIVVLMT 179 L W + R ++WVD P G LQIL G G + R L ++ILP+ V+M Sbjct: 121 LGWTTGDAPRGGARMRWVDAPGGPLQILAGAGGTVPWHRFAGVVAALMASIILPVTVVMA 180 Query: 180 LATLVATPFVVRRAMTGLAQVAAQAERIDIDQRGVQLPLDTVPVEIVPLVKAINAALGRL 239 LATL+ATP VVRR++ GLA AA+AE IDID+RG QLPLD VP EIVPLV+A+N AL RL Sbjct: 181 LATLIATPMVVRRSLAGLATAAAEAEAIDIDRRGAQLPLDLVPSEIVPLVRAVNDALRRL 240 Query: 240 DKGYERHRRFLAAAAHELRTPIAILSARVASLQAGLEKTRLLEDATRLSVLAGQLLDLQR 299 D+G ER FLA AAHE+RTPIAIL R+ SL G + RLLED RLS LA QLLD++R Sbjct: 241 DEGLERRELFLANAAHEVRTPIAILQTRIESLDLGPQTARLLEDMKRLSTLADQLLDVER 300 Query: 300 LDQQTDTFVEVDLVGIARQVVLDLAPLAFAAGYEMSFEQEDEAVVVSGDHTSLERALTNL 359 L ++V VDLV IAR+ DLAPLA AAGYE+ FE + + GD +LERA+ NL Sbjct: 301 LGHTVASWVAVDLVDIARRTTADLAPLAIAAGYEIEFENTVDVFTMPGDEGALERAIANL 360 Query: 360 VQNAIDHGQRRGTILVRVTTAGRIEVHDDGNGIPPDEREQIFEPFRRLHPGGRGAGLGLD 419 +QNAI +G RRG I++RV+++ + V D+G G+P +RE++FEPF R+ PG RGAGLGL+ Sbjct: 361 IQNAIQYGGRRGRIVIRVSSS-ELSVADEGPGVPSADRERVFEPFYRVSPGTRGAGLGLN 419 Query: 420 LVQTIMRLHGGRIEVDRAPSGGACMRMVFA 449 LV+ I RLH GR+E+ +P+G M A Sbjct: 420 LVREIARLHSGRVEIKDSPTGAHVAIMFGA 449