BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0200.0037.p         (159 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_766892.1| transcriptional regulator [Bradyrhizobium japon...   251   3e-65
ref|ZP_07674355.1| transcriptional regulator, LysR family [Ralst...   147   5e-34
ref|ZP_08630961.1| transcriptional regulator, LysR family [Brady...   143   1e-32
ref|ZP_03502420.1| probable transcriptional regulator protein, L...   142   1e-32
ref|YP_001328399.1| LysR family transcriptional regulator [Sinor...   142   2e-32

>ref|NP_766892.1| transcriptional regulator [Bradyrhizobium japonicum USDA 110]
 dbj|BAC45517.1| transcriptional regulatory protein [Bradyrhizobium japonicum USDA
           110]
          Length = 325

 Score =  251 bits (641), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 132/147 (89%)

Query: 10  VAAPSYLSRFGTPKTPADLAAHRGIGWTFPRSIRGWPFRRAERIEEALPPPVARVSDGEA 69
           V AP+YL+RFGTPK PADLA HRGIGWTFPRSIRGWPF+R +R EEA+PPP AR SDGEA
Sbjct: 170 VGAPNYLARFGTPKIPADLADHRGIGWTFPRSIRGWPFKRGDRTEEAVPPPAARASDGEA 229

Query: 70  ARQLTLGGIGLGRLALFHIGPDIEAGRLVPVLQNLNPGDREDIHAVYVGHAGPLPARVRA 129
           AR+L LGG+GL RLALFHIGPDIE+GRLVPVLQN NPGDREDIHAVYVGH  PLPARVRA
Sbjct: 230 ARRLALGGVGLARLALFHIGPDIESGRLVPVLQNYNPGDREDIHAVYVGHTAPLPARVRA 289

Query: 130 FIDFLAQHIRIGDPSLRRGADGRWKVV 156
           FIDFLA+H+R+ DP+L+R  DG+W+V+
Sbjct: 290 FIDFLAEHVRVSDPALKRAGDGKWRVM 316


>ref|ZP_07674355.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
 gb|EFP67175.1| transcriptional regulator, LysR family [Ralstonia sp. 5_7_47FAA]
          Length = 301

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 69/132 (52%), Positives = 93/132 (70%)

Query: 10  VAAPSYLSRFGTPKTPADLAAHRGIGWTFPRSIRGWPFRRAERIEEALPPPVARVSDGEA 69
           VA+P+YL+R GTP+TPADLA H  + +++ R+   WPF +  R     P    ++SDGEA
Sbjct: 170 VASPAYLARAGTPRTPADLARHNCLTFSYVRAENAWPFAKRGRRTAFTPQGNTQISDGEA 229

Query: 70  ARQLTLGGIGLGRLALFHIGPDIEAGRLVPVLQNLNPGDREDIHAVYVGHAGPLPARVRA 129
            R + + G+GL RLA F +  D+EAGRLVPVL++ NPG+ EDIHAVYVG    LPARVRA
Sbjct: 230 LRAVAVAGLGLARLAEFQVRADLEAGRLVPVLEDYNPGETEDIHAVYVGQGAHLPARVRA 289

Query: 130 FIDFLAQHIRIG 141
           F+DFL  H+++ 
Sbjct: 290 FLDFLVAHVKVA 301


>ref|ZP_08630961.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium
           SG-6C]
 gb|EGP06493.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium
           SG-6C]
          Length = 301

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/132 (53%), Positives = 93/132 (70%), Gaps = 1/132 (0%)

Query: 10  VAAPSYLSRFGTPKTPADLAAHRGIGWTFPRSIRGWPFRRAERIEEALPPP-VARVSDGE 68
           VAAPSYL   GTPKTP+DL  H  +G+ F + I GWPFR       ++ P   A VSDGE
Sbjct: 170 VAAPSYLKEHGTPKTPSDLTKHNMLGFCFSKQIDGWPFRDGNGGTISVAPVGNALVSDGE 229

Query: 69  AARQLTLGGIGLGRLALFHIGPDIEAGRLVPVLQNLNPGDREDIHAVYVGHAGPLPARVR 128
           A ++L + G GL RLA FH+  DI+AGRL  VL++ NPGD E +HAV++GH G LPARVR
Sbjct: 230 AMQRLAVAGAGLARLARFHVDADIKAGRLAAVLEDSNPGDLEPVHAVFLGHGGHLPARVR 289

Query: 129 AFIDFLAQHIRI 140
           AF+D+L +++R+
Sbjct: 290 AFLDYLVENVRL 301


>ref|ZP_03502420.1| probable transcriptional regulator protein, LysR family [Rhizobium
           etli Kim 5]
          Length = 300

 Score =  142 bits (359), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 88/131 (67%)

Query: 10  VAAPSYLSRFGTPKTPADLAAHRGIGWTFPRSIRGWPFRRAERIEEALPPPVARVSDGEA 69
           VA+P YL R G P+T ADL  H  IG+++ R+I GWP R +         P  +V DGEA
Sbjct: 170 VASPEYLRRHGEPRTLADLRRHCRIGFSYARAIEGWPMRESGETVTIPITPGIQVGDGEA 229

Query: 70  ARQLTLGGIGLGRLALFHIGPDIEAGRLVPVLQNLNPGDREDIHAVYVGHAGPLPARVRA 129
            R L L G GL RLA F +  DIEAGRLVPVL+  NPGD E+ +A+Y+G  GPLPARVRA
Sbjct: 230 MRHLALSGAGLARLAAFTVRADIEAGRLVPVLEEANPGDLEEFYALYIGQGGPLPARVRA 289

Query: 130 FIDFLAQHIRI 140
            +DFLA H+R+
Sbjct: 290 LLDFLASHVRL 300


>ref|YP_001328399.1| LysR family transcriptional regulator [Sinorhizobium medicae
           WSM419]
 gb|ABR61564.1| transcriptional regulator, LysR family [Sinorhizobium medicae
           WSM419]
          Length = 303

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/132 (55%), Positives = 92/132 (69%), Gaps = 2/132 (1%)

Query: 10  VAAPSYLSRFGTPKTPADLAAHRGIGWTFPRSIRGWPFRRAERIEEALPPPVA-RVSDGE 68
           V APSY+ R+G P +  DLA H  +G+ + R++ GWP R AE     LP   A +VSDGE
Sbjct: 170 VGAPSYVERYGMPSSLEDLAGHERLGFCYARAVDGWPIR-AEGETIVLPASGAVQVSDGE 228

Query: 69  AARQLTLGGIGLGRLALFHIGPDIEAGRLVPVLQNLNPGDREDIHAVYVGHAGPLPARVR 128
             RQL L G GL RLA F +  D+ AGRLVPVL++LNPGD E++HAVY+G  G LPARVR
Sbjct: 229 GLRQLALAGAGLARLAEFTVREDVRAGRLVPVLEDLNPGDLEEVHAVYLGQGGALPARVR 288

Query: 129 AFIDFLAQHIRI 140
           A +DFLA+H R+
Sbjct: 289 AVLDFLARHARV 300