BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0027.p (295 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_01304064.1| RNA polymerase sigma-70 factor [Sphingomonas ... 333 1e-89 ref|ZP_04682646.1| RNA polymerase sigma factor, sigma-70 family ... 332 5e-89 ref|YP_004532746.1| RNA polymerase sigma-70 factor, ECF subfamil... 330 1e-88 ref|ZP_03587530.1| RNA polymerase sigma-70 factor [Burkholderia ... 326 3e-87 gb|EGD03329.1| RNA polymerase sigma factor SigJ [Burkholderia sp... 325 7e-87 >ref|ZP_01304064.1| RNA polymerase sigma-70 factor [Sphingomonas sp. SKA58] gb|EAT08156.1| RNA polymerase sigma-70 factor [Sphingomonas sp. SKA58] Length = 287 Score = 333 bits (855), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 169/279 (60%), Positives = 210/279 (75%), Gaps = 2/279 (0%) Query: 10 AAEIFAELRPRLIRLAYRMLGSVADAEDVVHSAWVRWLGADRDQMRDPKAVLHTIVTRLS 69 AA FA LRPRL R+AYRMLGSVADAEDVV A++RW+GAD D +R+P+A L IVTRL Sbjct: 9 AAARFAPLRPRLTRIAYRMLGSVADAEDVVQDAFLRWMGADHDAVREPEAFLRRIVTRLC 68 Query: 70 LNELKSARRRRAAYVGPWLPEPFFDPEAEEAADDLILPLMIALERLSPLERAAFLLHDVF 129 L+ LKSAR RR YVGPWLPEP + + +E DD+ LPLM+ALERLSPLERAAFLLHDVF Sbjct: 69 LDHLKSARVRRETYVGPWLPEPLVE-DGDEDPDDITLPLMLALERLSPLERAAFLLHDVF 127 Query: 130 GLGFDAVSETIGREAATCRKLASRARAHIHAARPRFVVSNEEGLRLANAFFTATRTGDLA 189 G GF+ V+ TIGR+ A CR+LA+RAR H+ AAR R+ + GL +ANAFFTA+R+GD+ Sbjct: 128 GQGFEEVAATIGRDTAACRQLAARARGHVRAARSRYRMDAARGLEIANAFFTASRSGDMG 187 Query: 190 TLRAMLAEDVVVYADGGGRVPAPIRPLLGLEATMERFAALARLFAVQPSRLIRYATINGL 249 L AMLA+DV +++DGGG+ PA +RP LG M+ AL LF S L+R INGL Sbjct: 188 ALGAMLAQDVSLHSDGGGKRPATVRPALGFAQVMQVHKALGVLFGKYGSTLLRTCRINGL 247 Query: 250 PGFITIE-DDLVQTTALHIEEQKVVAIYVTRNPDKLQNV 287 PGF+T E D +QTTAL IE+ ++ AIYV RNPDKL+++ Sbjct: 248 PGFVTREADGEIQTTALAIEDGRISAIYVMRNPDKLRHL 286 >ref|ZP_04682646.1| RNA polymerase sigma factor, sigma-70 family [Ochrobactrum intermedium LMG 3301] gb|EEQ93950.1| RNA polymerase sigma factor, sigma-70 family [Ochrobactrum intermedium LMG 3301] Length = 286 Score = 332 bits (851), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 168/288 (58%), Positives = 210/288 (72%), Gaps = 4/288 (1%) Query: 1 MTDAAEDASAAEIFAELRPRLIRLAYRMLGSVADAEDVVHSAWVRWLGADRDQMRDPKAV 60 MTD + AAE F LRP+LIR+AYRMLGSVADAED+V A++RW+ ADR ++R+P+A Sbjct: 1 MTDISSQGDAAESFDPLRPKLIRVAYRMLGSVADAEDMVQEAFIRWMNADRSEVREPEAF 60 Query: 61 LHTIVTRLSLNELKSARRRRAAYVGPWLPEPFFDPEAEEAADDLILPLMIALERLSPLER 120 L VTRL L+ LKS R +R Y GPW+P+P + EEA DD+ LPLM+ALERLSPLER Sbjct: 61 LRRTVTRLCLDFLKSGRNQRETYFGPWIPDPVVE---EEADDDVTLPLMLALERLSPLER 117 Query: 121 AAFLLHDVFGLGFDAVSETIGREAATCRKLASRARAHIHAARPRFVVSNEEGLRLANAFF 180 AAFLLHDVFGL FD ++ TI R+AA CR+LA+RAR H+ RPRF V + GL LA AFF Sbjct: 118 AAFLLHDVFGLDFDEIARTIQRDAAACRQLAARARKHVREERPRFQVDRQRGLELAQAFF 177 Query: 181 TATRTGDLATLRAMLAEDVVVYADGGGRVPAPIRPLLGLEATMERFAALARLFAVQPSRL 240 TA+R+GD+ L AMLA DV ++ADGGG+ PA +P+ G + M+ LA F+ S L Sbjct: 178 TASRSGDMNALGAMLAADVNLHADGGGKRPAFPKPVFGFDEVMKTHEKLAAYFSGNQSTL 237 Query: 241 IRYATINGLPGFITIE-DDLVQTTALHIEEQKVVAIYVTRNPDKLQNV 287 +R INGLPGFIT E D +QTTAL IEE K+V IYV RNPDKL+++ Sbjct: 238 LRTVFINGLPGFITQEADGEIQTTALDIEEGKIVGIYVVRNPDKLKHL 285 >ref|YP_004532746.1| RNA polymerase sigma-70 factor, ECF subfamily [Novosphingobium sp. PP1Y] emb|CCA89958.1| RNA polymerase sigma-70 factor, ECF subfamily [Novosphingobium sp. PP1Y] Length = 283 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 166/281 (59%), Positives = 211/281 (75%), Gaps = 4/281 (1%) Query: 8 ASAAEIFAELRPRLIRLAYRMLGSVADAEDVVHSAWVRWLGADRDQMRDPKAVLHTIVTR 67 ++A E F LRPRLIR+AYRMLGSVADAEDVV A++RWL DR +R+P+A L T VTR Sbjct: 5 SAALEAFGPLRPRLIRVAYRMLGSVADAEDVVQEAFIRWLRIDRTAIREPEAFLRTTVTR 64 Query: 68 LSLNELKSARRRRAAYVGPWLPEPFFDPEAEEAADDLILPLMIALERLSPLERAAFLLHD 127 L L+ LKSAR RR +Y+GPWLP+P D E EE D+ LPLM+ALERLSPLERAAFLLHD Sbjct: 65 LCLDHLKSARHRRESYIGPWLPDPVLDEEGEE---DVTLPLMLALERLSPLERAAFLLHD 121 Query: 128 VFGLGFDAVSETIGREAATCRKLASRARAHIHAARPRFVVSNEEGLRLANAFFTATRTGD 187 VFG F+ V+ TIGR+ A CR+LA+RARAH+ RPRF + + GL +A AFF A+R+GD Sbjct: 122 VFGAAFEDVAATIGRDVAACRQLAARARAHVREERPRFTLEKQRGLAIAQAFFEASRSGD 181 Query: 188 LATLRAMLAEDVVVYADGGGRVPAPIRPLLGLEATMERFAALARLFAVQPSRLIRYATIN 247 +A L +MLA DV +++DGGG+ PA +RP+ G ++ ALA LF Q S+L+ IN Sbjct: 182 MAALGSMLASDVAMHSDGGGKRPAAVRPIFGSRPVLQLHKALAVLFRKQGSQLVGTRMIN 241 Query: 248 GLPGFITIE-DDLVQTTALHIEEQKVVAIYVTRNPDKLQNV 287 GLPGFIT E D +QTTAL I+ +++VAIYV RNPDKL+++ Sbjct: 242 GLPGFITREADGELQTTALEIQGERIVAIYVMRNPDKLKHL 282 >ref|ZP_03587530.1| RNA polymerase sigma-70 factor [Burkholderia multivorans CGD1] gb|EED97926.1| RNA polymerase sigma-70 factor [Burkholderia multivorans CGD1] Length = 289 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/286 (59%), Positives = 210/286 (73%), Gaps = 6/286 (2%) Query: 3 DAAEDASAAEIFAELRPRLIRLAYRMLGSVADAEDVVHSAWVRWLGADRDQMRDPKAVLH 62 D DA+A+ F LR LIR+AYRMLGSVADAEDVV A++RW+ DR ++R P+A L Sbjct: 8 DTMGDAAAS--FDPLRRMLIRVAYRMLGSVADAEDVVQDAFIRWMDVDRTEIRVPEAFLR 65 Query: 63 TIVTRLSLNELKSARRRRAAYVGPWLPEPFFDPEAEEAADDLILPLMIALERLSPLERAA 122 +V RL L+ LKSAR RR YVGPWLPEP D + +E D+ LPLM+ALERLSPLERAA Sbjct: 66 RMVMRLCLDHLKSARHRRETYVGPWLPEPVVDEDEQE---DVTLPLMLALERLSPLERAA 122 Query: 123 FLLHDVFGLGFDAVSETIGREAATCRKLASRARAHIHAARPRFVVSNEEGLRLANAFFTA 182 FLLHDVFGL FD V+ TI RE A CR+LA+RAR H+ ARPRF V + G+ LA AFF A Sbjct: 123 FLLHDVFGLEFDEVAATIQREPAACRQLAARARTHVREARPRFRVDKQRGIELAEAFFAA 182 Query: 183 TRTGDLATLRAMLAEDVVVYADGGGRVPAPIRPLLGLEATMERFAALARLFAVQPSRLIR 242 +R+GD+ TL AMLAEDV +++DGGG+ A +P+ G E M+ A LA LFA Q S L+R Sbjct: 183 SRSGDMRTLGAMLAEDVSLHSDGGGKRTAAAKPVFGFERVMKVHAHLAELFATQASMLVR 242 Query: 243 YATINGLPGFITIE-DDLVQTTALHIEEQKVVAIYVTRNPDKLQNV 287 INGLPGF+T E D +QTTAL IE+ K+VAIYV RNPDKL+++ Sbjct: 243 AGFINGLPGFVTREADGELQTTALEIEDGKIVAIYVVRNPDKLKHL 288 >gb|EGD03329.1| RNA polymerase sigma factor SigJ [Burkholderia sp. TJI49] Length = 289 Score = 325 bits (832), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 165/281 (58%), Positives = 208/281 (74%), Gaps = 4/281 (1%) Query: 8 ASAAEIFAELRPRLIRLAYRMLGSVADAEDVVHSAWVRWLGADRDQMRDPKAVLHTIVTR 67 A AA F LR L+R+AYRMLGSVADAED+V A++RW+ DRD++R P+A L +V R Sbjct: 11 ADAAASFDPLRRMLVRVAYRMLGSVADAEDMVQEAFIRWMEVDRDEIRVPEAFLRRMVMR 70 Query: 68 LSLNELKSARRRRAAYVGPWLPEPFFDPEAEEAADDLILPLMIALERLSPLERAAFLLHD 127 + L++LKSAR RR YVGPWLPEP D E+ +D+ LPLM+ALERLSPLERAAFLLHD Sbjct: 71 MCLDQLKSARHRRETYVGPWLPEPVVD---EDETEDVTLPLMLALERLSPLERAAFLLHD 127 Query: 128 VFGLGFDAVSETIGREAATCRKLASRARAHIHAARPRFVVSNEEGLRLANAFFTATRTGD 187 VFGL FD V+ TI RE A CR+LA+RAR H+ ARPRF V + G+ LA AF+TA+R+GD Sbjct: 128 VFGLEFDEVAATIQREPAACRQLAARARTHVRDARPRFRVEKQRGIELAEAFYTASRSGD 187 Query: 188 LATLRAMLAEDVVVYADGGGRVPAPIRPLLGLEATMERFAALARLFAVQPSRLIRYATIN 247 + L AMLAEDV ++ADGGG+ A P+ G E M+ LA LFA S+L+R +N Sbjct: 188 MRALGAMLAEDVSLHADGGGKRSAAGVPVFGFERVMKVHTHLAELFATHASKLVRAGFVN 247 Query: 248 GLPGFITIE-DDLVQTTALHIEEQKVVAIYVTRNPDKLQNV 287 GLPGF+T+E D +QTTAL IE+ K+VAIYV RNPDKL+++ Sbjct: 248 GLPGFVTLEADGELQTTALEIEDGKIVAIYVVRNPDKLKHL 288