BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0019.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003069910.1| RNA polymerase sigma factor [Methylobacteriu... 266 2e-69 ref|ZP_08387902.1| RNA polymerase sigma factor, sigma-70 family ... 244 4e-63 ref|YP_002498914.1| ECF subfamily RNA polymerase sigma-24 subuni... 244 7e-63 ref|YP_002422148.1| ECF subfamily RNA polymerase sigma-24 subuni... 238 6e-61 ref|YP_003069342.1| RNA polymerase sigma factor [Methylobacteriu... 236 2e-60 >ref|YP_003069910.1| RNA polymerase sigma factor [Methylobacterium extorquens DM4] emb|CAX26080.1| RNA polymerase sigma factor [Methylobacterium extorquens DM4] Length = 320 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 133/198 (67%), Positives = 159/198 (80%) Query: 1 VEPDETVADDVTVTLMLALERLSPLERAAFLLHDVFDVPLTEVAITLGREPAAVRQLAAR 60 +EP+ETV+DD+T+TLMLALERLSPLERAAFLLHDVF+V L+EVA L REP AVRQLA R Sbjct: 121 IEPNETVSDDITMTLMLALERLSPLERAAFLLHDVFEVALSEVATALDREPTAVRQLAVR 180 Query: 61 ARKHVQAARPRFDVEPADADRITRAFFAAARDGDVAALSALLARNVEIHTDGGGKVLAFR 120 ARKHV++ R R+ V+P +ADRI RAFFAA+RDGD AAL+ LLA +VE+ +DGGG+VLA+ Sbjct: 181 ARKHVESGRQRYHVDPEEADRIARAFFAASRDGDTAALTRLLAADVELRSDGGGRVLAYP 240 Query: 121 NVIRGVERALRLFARQRRKYVVPPTLLRVVTIDGLPGYVSLDGGGVLQTTALDIREDGIT 180 NVI G++R LRLFA K P LLR IDGLPGYVS D GGVLQ TALD+R I Sbjct: 241 NVIHGMDRLLRLFAGLSTKAYFEPVLLRTAIIDGLPGYVSSDRGGVLQATALDVRNGRIA 300 Query: 181 AIYIVKNPDKLSHLAAEM 198 AIY+V+NPDKL H+AA + Sbjct: 301 AIYMVRNPDKLRHVAATL 318 >ref|ZP_08387902.1| RNA polymerase sigma factor, sigma-70 family protein [Sphingomonas sp. S17] gb|EGI56030.1| RNA polymerase sigma factor, sigma-70 family protein [Sphingomonas sp. S17] Length = 293 Score = 244 bits (624), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 141/198 (71%), Positives = 160/198 (80%), Gaps = 2/198 (1%) Query: 2 EPDETVADDVTVTLMLALERLSPLERAAFLLHDVFDVPLTEVAITLGREPAAVRQLAARA 61 +PDE VADD+TVTLMLA+ERLSPLERAAFLLHDVFDV L EVA TL R PA VRQLA+RA Sbjct: 88 DPDE-VADDLTVTLMLAMERLSPLERAAFLLHDVFDVALLEVARTLDRAPATVRQLASRA 146 Query: 62 RKHVQAARPRFDVEPADADRITRAFFAAARDGDVAALSALLARNVEIHTDGGGKVLAFRN 121 R+HV ARPR+ V+ +A RITRAFFAAARDGD ALS LLA +V IH+DGGG+VLAF N Sbjct: 147 RRHVAEARPRYPVDAQEAARITRAFFAAARDGDARALSDLLAEDVAIHSDGGGRVLAFHN 206 Query: 122 VIRGVERALRLFARQRRKY-VVPPTLLRVVTIDGLPGYVSLDGGGVLQTTALDIREDGIT 180 +IRG+ +A RLF RRKY P L+R TIDGLPGYVS GGGVLQTTALDIR+ IT Sbjct: 207 IIRGLAKAQRLFMGLRRKYPNEPAELIRFATIDGLPGYVSRTGGGVLQTTALDIRDGRIT 266 Query: 181 AIYIVKNPDKLSHLAAEM 198 AIYIV+NPDKL H+A + Sbjct: 267 AIYIVRNPDKLIHVATAL 284 >ref|YP_002498914.1| ECF subfamily RNA polymerase sigma-24 subunit [Methylobacterium nodulans ORS 2060] gb|ACL58611.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Methylobacterium nodulans ORS 2060] Length = 290 Score = 244 bits (622), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 129/192 (67%), Positives = 152/192 (79%), Gaps = 1/192 (0%) Query: 5 ETVADDVTVTLMLALERLSPLERAAFLLHDVFDVPLTEVAITLGREPAAVRQLAARARKH 64 E DD+T+TLMLALERLSPLERAAFLLHDVF VPL EVA TLGRE AAVRQLA RAR+H Sbjct: 93 EEPEDDLTLTLMLALERLSPLERAAFLLHDVFGVPLNEVAGTLGREAAAVRQLAVRARRH 152 Query: 65 VQAARPRFDVEPADADRITRAFFAAARDGDVAALSALLARNVEIHTDGGGKVLAFRNVIR 124 VQAARPR+ VE A+A+RI AFFAA+RDGD AL +LA +V +H+DGGG+V+AFRN I Sbjct: 153 VQAARPRYTVERAEAERIATAFFAASRDGDTQALGRMLAADVVLHSDGGGRVIAFRNPIV 212 Query: 125 GVERALRLFARQRRKYV-VPPTLLRVVTIDGLPGYVSLDGGGVLQTTALDIREDGITAIY 183 G+ R LRL+A +RK+ P LLR + IDGLPGYVS+D G +LQTTAL I + I AIY Sbjct: 213 GIARVLRLYAGLQRKHGPAVPQLLRPIWIDGLPGYVSIDRGAILQTTALAIEDGRIAAIY 272 Query: 184 IVKNPDKLSHLA 195 IV+NPDKL H+ Sbjct: 273 IVRNPDKLRHVG 284 >ref|YP_002422148.1| ECF subfamily RNA polymerase sigma-24 subunit [Methylobacterium chloromethanicum CM4] gb|ACK84220.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Methylobacterium chloromethanicum CM4] Length = 293 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 125/203 (61%), Positives = 153/203 (75%), Gaps = 2/203 (0%) Query: 1 VEPDETV-ADDVTVTLMLALERLSPLERAAFLLHDVFDVPLTEVAITLGREPAAVRQLAA 59 ++ +ET+ DD+T+TLM+ALERLSPLERAAFLLHDVF VPL EVA TLGR AVRQLA Sbjct: 88 LDTEETIDGDDLTLTLMMALERLSPLERAAFLLHDVFGVPLDEVAATLGRAAPAVRQLAV 147 Query: 60 RARKHVQAARPRFDVEPADADRITRAFFAAARDGDVAALSALLARNVEIHTDGGGKVLAF 119 RAR+HV+A RPR+ + P + +RI RAFF A+R GDVAAL LL++ V + DGGGKV+AF Sbjct: 148 RARQHVRAERPRYPLPPEEGERIARAFFDASRSGDVAALRGLLSQTVTMRADGGGKVIAF 207 Query: 120 RNVIRGVERALRLFARQRRKYV-VPPTLLRVVTIDGLPGYVSLDGGGVLQTTALDIREDG 178 N IRG++R LRLF+ RKY P TLLR V +D LPG+VSL+ GGVLQ TAL+IR+ Sbjct: 208 LNPIRGIDRVLRLFSGLARKYAGSPATLLRTVRVDSLPGFVSLERGGVLQVTALEIRDGR 267 Query: 179 ITAIYIVKNPDKLSHLAAEMTFP 201 I IYI +NPDKL +A M P Sbjct: 268 IAGIYITRNPDKLRRVAEAMAMP 290 >ref|YP_003069342.1| RNA polymerase sigma factor [Methylobacterium extorquens DM4] emb|CAX25491.1| RNA polymerase sigma factor [Methylobacterium extorquens DM4] Length = 293 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/195 (63%), Positives = 147/195 (75%), Gaps = 1/195 (0%) Query: 8 ADDVTVTLMLALERLSPLERAAFLLHDVFDVPLTEVAITLGREPAAVRQLAARARKHVQA 67 DD+T+TLM+ALERLSPLERAAFLLHDVF VPL EVA TLGR AVRQLA RAR+HV+A Sbjct: 96 GDDLTLTLMMALERLSPLERAAFLLHDVFGVPLDEVAATLGRAAPAVRQLAVRARQHVRA 155 Query: 68 ARPRFDVEPADADRITRAFFAAARDGDVAALSALLARNVEIHTDGGGKVLAFRNVIRGVE 127 RPR+ + P + +RI RAFF A+R GDVAAL LL+ V + DGGGKV+AF N IRG++ Sbjct: 156 ERPRYPLPPEEGERIARAFFDASRSGDVAALRGLLSETVMMRADGGGKVIAFLNPIRGID 215 Query: 128 RALRLFARQRRKYV-VPPTLLRVVTIDGLPGYVSLDGGGVLQTTALDIREDGITAIYIVK 186 R LRLF+ RKY P TLLR V +DGLPG+VSL+ GGVLQ TAL+IR+ I IYI + Sbjct: 216 RVLRLFSGLARKYAGSPATLLRTVRVDGLPGFVSLERGGVLQVTALEIRDGRIAGIYITR 275 Query: 187 NPDKLSHLAAEMTFP 201 NPDKL +A + P Sbjct: 276 NPDKLRRVAEAVAMP 290