BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0017.p (306 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776842.1| LysR family transcription regulator protein ... 291 8e-77 ref|YP_002542058.1| transcriptional regulator protein [Agrobacte... 278 8e-73 ref|YP_001525947.1| transcriptional regulator [Azorhizobium caul... 276 3e-72 gb|EGP43768.1| HTH-type transcriptional regulator YnfL 1 [Achrom... 270 2e-70 ref|ZP_06687942.1| als operon regulatory protein AlsR [Achromoba... 270 3e-70 >ref|YP_003776842.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64934.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 322 Score = 291 bits (745), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 154/294 (52%), Positives = 204/294 (69%), Gaps = 7/294 (2%) Query: 1 MELRHLRYFIAVAEEGHITRAAERLGMQQPPLSQQIKAIERELDVQLLRRKARGVELTDA 60 ++LR LRYFIAVAEEGH+T+AAER+G+QQPPLSQQI+ +EREL V L R RG+ELTD+ Sbjct: 19 IDLRLLRYFIAVAEEGHLTKAAERIGIQQPPLSQQIRVLERELGVTLFNRLPRGMELTDS 78 Query: 61 GSNFLDDARATLAQLERAVDSTRRTARGELGRICVGVTSTSSFHPLVARSIRAFSRSCPK 120 G+ L DARA LAQL+ V S RR A+G++GRI VG T ++S HP V IRAF P Sbjct: 79 GAALLIDARALLAQLDTTVASVRRIAQGKMGRIAVGFTESASLHPFVHSVIRAFRADAPD 138 Query: 121 VSLTLEESLSNELLDGLRNERMDVAFIRTAPADAHGLTIQRLLDEPMVVALPADHHLAEV 180 V++T+EES +NEL++ LR +R+D+AF+R+ D+ GLTI+ +L+E MV ALP DH L + Sbjct: 139 VAMTVEESNTNELIEALRGKRLDLAFVRSPVGDSGGLTIETMLEEDMVAALPIDHPLVDG 198 Query: 181 PRNSAIPLKRLAPETFILY-GPPGTGMYDTIITACSAAGFNPNVGNLGASTQQGPRIGST 239 + +I L LA E+FI+ P G G+YDTII AC AAGF+P V Q+ + ST Sbjct: 199 GKRKSIALHALAEESFIMTRRPNGPGLYDTIIAACHAAGFSPQV------IQEARKNLST 252 Query: 240 LSLVAAGLGITFVPSSLQRMNIEGVAYRRVKTSVPPTARLSLATRRGDPSATVR 293 LSLVAAG+G+T +P+S+ R+N EGV Y ++ + A L LA R G S R Sbjct: 253 LSLVAAGVGVTVIPASMTRVNAEGVVYLKLTGAPDLKAPLHLAYRTGSISGAAR 306 >ref|YP_002542058.1| transcriptional regulator protein [Agrobacterium radiobacter K84] gb|ACM30461.1| transcriptional regulator protein [Agrobacterium radiobacter K84] Length = 317 Score = 278 bits (711), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 155/311 (49%), Positives = 209/311 (67%), Gaps = 17/311 (5%) Query: 1 MELRHLRYFIAVAEEGHITRAAERLGMQQPPLSQQIKAIERELDVQLLRRKARGVELTDA 60 +ELRHLRY +AVA+ GHITRAAE+LG+QQPPLSQQI+A+E + L R RG+ LT A Sbjct: 12 IELRHLRYAVAVADAGHITRAAEQLGIQQPPLSQQIRALETMIGTPLFHRLPRGMALTAA 71 Query: 61 GSNFLDDARATLAQLERAVDSTRRTARGELGRICVGVTSTSSFHPLVARSIRAFSRSCPK 120 G ++ AR LA ++ AV++T+R+ARGE G + +G TS+++FHPLV+ +R+ +S P Sbjct: 72 GQTLVERARIILANVDLAVEATQRSARGEQGNLAIGFTSSAAFHPLVSSMVRSLKQSAPD 131 Query: 121 VSLTLEESLSNELLDGLRNERMDVAFIRTAPADAH-GLTIQRLLDEPMVVALPADHHL-- 177 V+L LEE+ + +L++ LR ER+DVAF+R+ P DA GL I+ +LDE M+VALP H L Sbjct: 132 VALALEEASTGDLIEALRAERLDVAFVRS-PVDASAGLVIEPILDEEMLVALPDQHPLVT 190 Query: 178 AEVPR------NSAIPLKRLAPETFILY-GPPGTGMYDTIITACSAAGFNPNVGNLGAST 230 V R + IPL LA ETFILY P G G+YD+II AC AAGF+P +G Sbjct: 191 GAVSRRRHGISSRRIPLLDLANETFILYRRPSGPGLYDSIIAACRAAGFSPRIG------ 244 Query: 231 QQGPRIGSTLSLVAAGLGITFVPSSLQRMNIEGVAYRRVKTSVPPTARLSLATRRGDPSA 290 Q+ PR+ STLSLVAA LGI+ +P S+ R+ G+ Y R++ + A L LA R PS Sbjct: 245 QEAPRLLSTLSLVAASLGISIIPESMARLEANGIVYFRIEKAAGLVAPLHLAYRDETPSG 304 Query: 291 TVRQFIALVRN 301 VR+FI VR Sbjct: 305 VVRRFIESVRQ 315 >ref|YP_001525947.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] dbj|BAF89029.1| transcriptional regulator [Azorhizobium caulinodans ORS 571] Length = 301 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 154/304 (50%), Positives = 202/304 (66%), Gaps = 10/304 (3%) Query: 1 MELRHLRYFIAVAEEGHITRAAERLGMQQPPLSQQIKAIERELDVQLLRRKARGVELTDA 60 +ELRHLRY +AVAEEGH+TRAA RLG+QQPPLSQQIKA+E + L RR RGVE T A Sbjct: 2 IELRHLRYLLAVAEEGHMTRAAARLGIQQPPLSQQIKALEGMVGTPLFRRLPRGVEPTAA 61 Query: 61 GSNFLDDARATLAQLERAVDSTRRTARGELGRICVGVTSTSSFHPLVARSIRAFSRSCPK 120 G ++ AR LA ++RA+D+ RRTARGE GR+ +G TS+++FH LVA +R+ + P Sbjct: 62 GLVLVEKARLILADVDRALDAARRTARGEEGRLALGFTSSAAFHALVAALVRSMREAAPT 121 Query: 121 VSLTLEESLSNELLDGLRNERMDVAFIRTAPADAHGLTIQRLLDEPMVVALPADHHLAEV 180 +SL+LEE+ + EL+ LR+ R+D AF+R A GL I +LDE M+VALP DHH Sbjct: 122 LSLSLEEASTLELIAALRDGRLDAAFVRAPVARPDGLVIAHVLDEEMLVALP-DHHRLAA 180 Query: 181 P--RNSAIPLKRLAPETFILY-GPPGTGMYDTIITACSAAGFNPNVGNLGASTQQGPRIG 237 P R A+ L L +TFILY P G G+YD+II AC AGF+P VG Q+ PR+ Sbjct: 181 PALRRRALELAALEEDTFILYRRPSGPGLYDSIIAACQQAGFSPRVG------QEAPRLA 234 Query: 238 STLSLVAAGLGITFVPSSLQRMNIEGVAYRRVKTSVPPTARLSLATRRGDPSATVRQFIA 297 STLSLVAAGLG++ VP+S+ R+ G+ YRR+ + A LSLA R P + + Sbjct: 235 STLSLVAAGLGLSIVPASMARLETNGIVYRRLAPPIRLFAPLSLAYRDEVPEGPLAALLR 294 Query: 298 LVRN 301 LV + Sbjct: 295 LVES 298 >gb|EGP43768.1| HTH-type transcriptional regulator YnfL 1 [Achromobacter xylosoxidans AXX-A] Length = 302 Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/307 (48%), Positives = 196/307 (63%), Gaps = 11/307 (3%) Query: 1 MELRHLRYFIAVAEEGHITRAAERLGMQQPPLSQQIKAIERELDVQLLRRKARGVELTDA 60 MELRHLRYF VAEE H TRAA RLG+ QPPLSQQI+ +ERE+ L R RGVELT+A Sbjct: 1 MELRHLRYFTVVAEELHFTRAAARLGIGQPPLSQQIQQLEREIGTALFLRLPRGVELTEA 60 Query: 61 GSNFLDDARATLAQLERAVDSTRRTARGELGRICVGVTSTSSFHPLVARSIRAFSRSCPK 120 G+ FL+DARA LA +RA+D+ RR RGE G I VG T+++ FHP + R+IRAF P Sbjct: 61 GAQFLEDARAILAGADRAIDTARRLGRGEHGAITVGFTASAVFHPYLPRAIRAFRDRYPD 120 Query: 121 VSLTLEESLSNELLDGLRNERMDVAFIRTAPADAHGLTIQRLLDEPMVVALPADHHLAEV 180 V ++L ES + LL GLR +DVAF+R +R+LDEPM++ALP DH L+ Sbjct: 121 VRISLTESNTVSLLRGLRENAVDVAFVRPPYVLDPEFEAERVLDEPMLIALPPDHPLS-- 178 Query: 181 PRNSAIPLKRLAPETFILYGPP-GTGMYDTIITACSAAGFNPNVGNLGASTQQGPRIGST 239 R ++P+ LA + F+LY P G G+YD I AC AGF P V Q+ P++ S Sbjct: 179 -RKRSVPIASLADQDFVLYPRPIGAGLYDAIQNACLRAGFTPRV------IQEAPQMASI 231 Query: 240 LSLVAAGLGITFVPSSLQRMNIEGVAYRRVKTSVPPTARLSLATRRGDPSATVRQFIALV 299 +SLVAAG+GI+ VP++++ M +G+ YR +K P A L +A RR D S R + ++ Sbjct: 232 VSLVAAGVGISIVPAAMRHMGAQGIEYRPIKGDA-PHALLDMAYRRHDRSVAARNAVEML 290 Query: 300 RNAAKVE 306 R A E Sbjct: 291 RRLAHPE 297 >ref|ZP_06687942.1| als operon regulatory protein AlsR [Achromobacter piechaudii ATCC 43553] gb|EFF75186.1| als operon regulatory protein AlsR [Achromobacter piechaudii ATCC 43553] Length = 303 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/307 (48%), Positives = 198/307 (64%), Gaps = 11/307 (3%) Query: 1 MELRHLRYFIAVAEEGHITRAAERLGMQQPPLSQQIKAIERELDVQLLRRKARGVELTDA 60 MELRHLRYF AVAEE H TRAA RLG+ QPPLSQQI+ +ERE+ L R RG+E+T+A Sbjct: 1 MELRHLRYFTAVAEELHFTRAAARLGIGQPPLSQQIQQLEREIGTPLFLRLPRGIEMTEA 60 Query: 61 GSNFLDDARATLAQLERAVDSTRRTARGELGRICVGVTSTSSFHPLVARSIRAFSRSCPK 120 G+ FL+DARA LA +RA+D+ RR RGE G I VG T+++ FHP + R+IRA+ P Sbjct: 61 GAQFLEDARAILASADRAIDTARRLGRGERGAITVGFTASAVFHPYLPRAIRAYRDRYPD 120 Query: 121 VSLTLEESLSNELLDGLRNERMDVAFIRTAPADAHGLTIQRLLDEPMVVALPADHHLAEV 180 V +TL ES + LL GLR +DVAF+R +R+LDEPM+VALP DH L+ Sbjct: 121 VRVTLTESNTLSLLRGLRQGDVDVAFVRPPYLLDAEFESERVLDEPMLVALPPDHPLS-- 178 Query: 181 PRNSAIPLKRLAPETFILYGPP-GTGMYDTIITACSAAGFNPNVGNLGASTQQGPRIGST 239 R ++P+ LA E F+LY P G G+YD I +AC AGF P V Q+ P++ S Sbjct: 179 -RRRSVPISALADEDFVLYPRPIGAGLYDAIQSACQRAGFAPRV------IQEAPQMASI 231 Query: 240 LSLVAAGLGITFVPSSLQRMNIEGVAYRRVKTSVPPTARLSLATRRGDPSATVRQFIALV 299 +SLVAAG+GI+ VP++++ M +G+ YR +K P A L +A RR D S +AL+ Sbjct: 232 VSLVAAGVGISVVPAAMRHMGAQGIEYRPIKGDA-PHALLDMAYRRHDRSIAAVNAVALL 290 Query: 300 RNAAKVE 306 R A E Sbjct: 291 RQLAHPE 297