BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0016.p (326 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002827318.1| hypothetical protein NGR_c28190 [Sinorhizobi... 265 8e-69 ref|YP_004128115.1| hypothetical protein Alide_3510 [Alicycliphi... 256 3e-66 ref|YP_002554303.1| hypothetical protein Dtpsy_2869 [Acidovorax ... 252 7e-65 ref|YP_586120.1| extra-cytoplasmic solute receptor protein [Cupr... 252 7e-65 ref|YP_004682742.1| extra-cytoplasmic solute receptor [Cupriavid... 251 8e-65 >ref|YP_002827318.1| hypothetical protein NGR_c28190 [Sinorhizobium fredii NGR234] gb|ACP26565.1| conserved hypothetical protein [Sinorhizobium fredii NGR234] Length = 330 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 136/328 (41%), Positives = 198/328 (60%), Gaps = 9/328 (2%) Query: 3 LGRRKLLCASVATAAAVVSPRLGS---AGAYPVKPVRIIVPFAAGGPNDVAARLIAQGLS 59 + RR L +AT +A+ LGS A ++P + + ++VPFAAGG DV AR+IAQ +S Sbjct: 6 MTRRAALAFGIATLSAMT---LGSPVQAQSFPDRTITLVVPFAAGGSTDVVARIIAQKMS 62 Query: 60 DRLGKQFYVENIGGGGGNVGTGEASRAAADGYTIL--TVAPSYAANPALFDSVPYDPVKS 117 + LG+Q V+N+ G GGN+G +RA DGYTIL TVA ++A NP + + PYDP K Sbjct: 63 EDLGQQIVVQNVAGAGGNLGASNVARADPDGYTILMATVA-THALNPLILKTKPYDPEKD 121 Query: 118 FDAVTLAATAPTVLTVHPSVPATTVTELIKAIKDTPGKYSYASPGTGTPPHLLGELFRVS 177 F V+L P VL V+P +PA +V EL+ +K +P +YSYAS G GTP HL GELF+ Sbjct: 122 FAPVSLLVIVPNVLVVNPELPAKSVQELLALLKASPDQYSYASSGNGTPLHLSGELFKTM 181 Query: 178 LKLDMVHVPFSSGGQAVQSTLAGNTPISFGALPPAVQHVREGALRALAITSATPADALPG 237 + M H+P+ G A+ + PI F LP + H++ G LRALA+T+A A + P Sbjct: 182 AGVQMQHIPYKGSGPALNDVIGNQVPIMFDNLPSSSSHIKAGTLRALAVTTAERAPSFPD 241 Query: 238 VPTIAQAGYPDFAADIWTAVLVPAGTPKDIVALLQREIAKLIVSPDISGRMAALGYHPIG 297 VPTIA++G P + W A+ PA TP+ ++A L K + P + RM +G Sbjct: 242 VPTIAESGIPGYETYTWNALFAPADTPQPVIARLNEAANKALADPAVKKRMGEFSAKIVG 301 Query: 298 NTPEECAEHIRLEATRWAKVIQEAGIKV 325 +TPEE A H++ E +W V+++A +++ Sbjct: 302 STPEELAAHVKAELAKWTPVVRDANVQM 329 >ref|YP_004128115.1| hypothetical protein Alide_3510 [Alicycliphilus denitrificans BC] ref|YP_004389768.1| hypothetical protein Alide2_3931 [Alicycliphilus denitrificans K601] gb|ADV01228.1| hypothetical protein Alide_3510 [Alicycliphilus denitrificans BC] gb|AEB86252.1| hypothetical protein Alide2_3931 [Alicycliphilus denitrificans K601] Length = 330 Score = 256 bits (654), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 128/297 (43%), Positives = 180/297 (60%), Gaps = 1/297 (0%) Query: 30 YPVKPVRIIVPFAAGGPNDVAARLIAQGLSDRLGKQFYVENIGGGGGNVGTGEASRAAAD 89 YP KPV IIVPF+AGG D+ AR++ QGL LG+ F V+N G GGN+G A++A AD Sbjct: 33 YPAKPVTIIVPFSAGGTTDILARIVGQGLQTELGQPFVVDNRAGAGGNIGASLAAKAPAD 92 Query: 90 GYTILT-VAPSYAANPALFDSVPYDPVKSFDAVTLAATAPTVLTVHPSVPATTVTELIKA 148 GYT+ ++A N AL+ +P+DPVK F ++ AT P +L HPS P TV ELI Sbjct: 93 GYTLFMGTVGTHAINQALYKKMPFDPVKDFAPISRVATVPNLLVAHPSQPYKTVKELIAY 152 Query: 149 IKDTPGKYSYASPGTGTPPHLLGELFRVSLKLDMVHVPFSSGGQAVQSTLAGNTPISFGA 208 K PGK ++ SPG+G PH+ GELF+ D++HVP+ A+ L G I F Sbjct: 153 AKANPGKVTFGSPGSGASPHVSGELFKSMTGTDLLHVPYKGSAPAMTDLLGGQISIMFDN 212 Query: 209 LPPAVQHVREGALRALAITSATPADALPGVPTIAQAGYPDFAADIWTAVLVPAGTPKDIV 268 +P A+QHVR G LR +A+T+A + LP VPTIA+AG P + A W + PA TPK ++ Sbjct: 213 MPSAIQHVRSGKLRPIAVTTARRSPELPDVPTIAEAGVPGYEAMSWFGMFAPAATPKPVL 272 Query: 269 ALLQREIAKLIVSPDISGRMAALGYHPIGNTPEECAEHIRLEATRWAKVIQEAGIKV 325 L + K++ PD+ ++A G + TP + A I+ E+ +W KV++E+G V Sbjct: 273 DKLNAALVKVLNQPDVKKKIAEQGGDVVAETPAQFAAFIKAESAKWGKVVKESGATV 329 >ref|YP_002554303.1| hypothetical protein Dtpsy_2869 [Acidovorax ebreus TPSY] gb|ACM34303.1| conserved hypothetical protein [Acidovorax ebreus TPSY] Length = 330 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 122/294 (41%), Positives = 181/294 (61%), Gaps = 1/294 (0%) Query: 30 YPVKPVRIIVPFAAGGPNDVAARLIAQGLSDRLGKQFYVENIGGGGGNVGTGEASRAAAD 89 +P KP+ IIVPF+AGG D+ AR++ QGL+ LG+ V+N G GGN+G A++AAAD Sbjct: 33 FPTKPITIIVPFSAGGTTDILARIVGQGLTTELGQSVVVDNKPGAGGNIGGSLAAKAAAD 92 Query: 90 GYTILT-VAPSYAANPALFDSVPYDPVKSFDAVTLAATAPTVLTVHPSVPATTVTELIKA 148 GYT+ ++A N +L+ +P+DPVK F ++ AT P +L HPS P TV E+I Sbjct: 93 GYTLFMGTVGTHAINQSLYKKMPFDPVKDFAPLSRVATVPNLLVAHPSQPFKTVKEMIAY 152 Query: 149 IKDTPGKYSYASPGTGTPPHLLGELFRVSLKLDMVHVPFSSGGQAVQSTLAGNTPISFGA 208 K PGK ++ SPG+G PH+ GELF+ D++H+P+ A+ L G T + F Sbjct: 153 AKANPGKITFGSPGSGASPHVSGELFKSMTGTDLLHIPYKGSAPAMTDLLGGQTSVMFDN 212 Query: 209 LPPAVQHVREGALRALAITSATPADALPGVPTIAQAGYPDFAADIWTAVLVPAGTPKDIV 268 +P A+QHVR G LR +A+T+A + LP VPTIA+AG P + A W + PAGTPK ++ Sbjct: 213 MPSAIQHVRSGKLRPIAVTTAKRSPELPDVPTIAEAGVPGYEATSWFGMFAPAGTPKPVL 272 Query: 269 ALLQREIAKLIVSPDISGRMAALGYHPIGNTPEECAEHIRLEATRWAKVIQEAG 322 L + K++ D+ ++A G + TP + A I+ E+ +W KV++E+G Sbjct: 273 DKLHAALIKVLNQADVKKKIAEQGGDVVAETPAQFAAFIKAESVKWGKVVKESG 326 >ref|YP_586120.1| extra-cytoplasmic solute receptor protein [Cupriavidus metallidurans CH34] gb|ABF10851.1| extra-cytoplasmic solute receptor protein [Cupriavidus metallidurans CH34] Length = 328 Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 135/324 (41%), Positives = 194/324 (59%), Gaps = 3/324 (0%) Query: 2 ILGRRKLLCASVATAAAVVSPRLGSAGAYPVKPVRIIVPFAAGGPNDVAARLIAQGLSDR 61 + RR+++ ATA+ P + AYP KP+R++V F +GG D+ AR+ ++ +S Sbjct: 5 MFARRQVVAMLAATASLAAIPAAQANDAYPSKPIRMVVGFPSGGAPDILARIFSEKIS-- 62 Query: 62 LGKQFYVENIGGGGGNVGTGEASRAAADGYTI-LTVAPSYAANPALFDSVPYDPVKSFDA 120 LG+ V+N G GGN+G +R+A DGYT+ L +++ N AL+ +PYD VK F Sbjct: 63 LGQPVVVDNKPGAGGNIGAETVARSAPDGYTLALGTVGTHSINGALYSKMPYDMVKDFTP 122 Query: 121 VTLAATAPTVLTVHPSVPATTVTELIKAIKDTPGKYSYASPGTGTPPHLLGELFRVSLKL 180 V L A+ P VL VHPSVPA V ELI K PG+ ++ +PG GT H+ GELF Sbjct: 123 VILLASTPNVLVVHPSVPAKNVQELIALAKAKPGQLTFGTPGIGTSLHVAGELFNTMAGT 182 Query: 181 DMVHVPFSSGGQAVQSTLAGNTPISFGALPPAVQHVREGALRALAITSATPADALPGVPT 240 + HVP+ A+ L G+ + F LP A+ V+EG LRAL +TSA + + P +PT Sbjct: 183 KIEHVPYKGRAMAIPDLLGGHITMMFDNLPSALPVVKEGKLRALGVTSAQRSTSAPDIPT 242 Query: 241 IAQAGYPDFAADIWTAVLVPAGTPKDIVALLQREIAKLIVSPDISGRMAALGYHPIGNTP 300 IA+ G P + A W AV VPA TPK+IVA L E+ ++ PD+ ++ LG PI TP Sbjct: 243 IAEQGLPGYEATSWFAVFVPAHTPKEIVAKLNAEMNRIFTLPDVQTKLKTLGLDPILGTP 302 Query: 301 EECAEHIRLEATRWAKVIQEAGIK 324 E+ AE+ R E +WAKV++++G K Sbjct: 303 EKLAEYQRSEIAKWAKVVKDSGAK 326 >ref|YP_004682742.1| extra-cytoplasmic solute receptor [Cupriavidus necator N-1] gb|AEI82894.1| extra-cytoplasmic solute receptor [Cupriavidus necator N-1] Length = 328 Score = 251 bits (642), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 135/320 (42%), Positives = 199/320 (62%), Gaps = 3/320 (0%) Query: 7 KLLCASVATAAAVVSPRLGSAGAYPVKPVRIIVPFAAGGPNDVAARLIAQGLSDRLGKQF 66 +LLCA A ++S + ++G YPVKPV +IVP A GG ND AR++AQ L LG+ Sbjct: 10 RLLCAGGLAPALLISSAVWASG-YPVKPVTLIVPQAPGGANDAVARIVAQRLGAVLGQPI 68 Query: 67 YVENIGGGGGNVGTGEASRAAADGYTIL-TVAPSYAANPALFDSVPYDPVKSFDAVTLAA 125 V+N G GGN+G A++A DGYT+L TV S+ NP+L+ +P+DPVK F+ +TL A Sbjct: 69 VVDNRPGAGGNIGIQVAAKAPHDGYTLLLTVGSSFTINPSLYRKIPFDPVKDFEPITLMA 128 Query: 126 TAPTVLTVHPSVPATTVTELIKAIKDTPGKYSYASPGTGTPPHLLGELFRVSLKLDMVHV 185 TAP +L +P++ A +V +LI + PGK YAS G GT HLLGE+ + +D+ HV Sbjct: 129 TAPYLLVTNPAIQARSVQDLIGLARSKPGKLDYASAGNGTLNHLLGEMLKAKAGIDITHV 188 Query: 186 PFSSGGQAVQSTLAGNTPISFGALPPAVQHVREGALRALAITSATPADALPGVPTIAQAG 245 P+ S A +AG PI+FG+LP + V+ G LR L + + + +P VPTI +A Sbjct: 189 PYKSAAAAATDVVAGQVPITFGSLPGVMPFVKTGQLRVLGVATEKRSRLIPEVPTIGEA- 247 Query: 246 YPDFAADIWTAVLVPAGTPKDIVALLQREIAKLIVSPDISGRMAALGYHPIGNTPEECAE 305 P ++A W +L PAGTPK+I+A L + K++ S D+ ++AA G NTPE+ Sbjct: 248 IPGYSAISWYGLLAPAGTPKEILAQLHADATKVLNSKDVQDKLAAQGAEAASNTPEQFRA 307 Query: 306 HIRLEATRWAKVIQEAGIKV 325 I+ + +WAKV++++G +V Sbjct: 308 LIKEDLVKWAKVVKDSGAQV 327