BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0013.p (197 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans... 259 1e-67 ref|YP_004674669.1| Ribonuclease HII [Hyphomicrobium sp. MC1] >g... 246 2e-63 ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA... 204 6e-51 ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/... 196 2e-48 ref|YP_004667087.1| ribonuclease HII [Myxococcus fulvus HW-1] >g... 195 2e-48 >ref|YP_003757323.1| ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] gb|ADJ25002.1| Ribonuclease H [Hyphomicrobium denitrificans ATCC 51888] Length = 274 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/196 (64%), Positives = 157/196 (80%) Query: 1 MSQYPLDVLRRRYVVEKRPLEASVEQILRADTRAGARAILASIDKRRFENRSEGQRLRKM 60 M+++ L LRRR+V+E+RPL+++ E L AD R GA+AIL +I +R F++RSEGQR+RK+ Sbjct: 1 MTKFILSELRRRHVLERRPLDSATEAALLADPRPGAKAILNAIARRHFDSRSEGQRIRKL 60 Query: 61 LRFETSLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREEL 120 LRFETSLW+TG VAGVDEAGMSPLAGPVSA AVI PGTRI +DDSKKL+AA R+ L Sbjct: 61 LRFETSLWKTGVQFVAGVDEAGMSPLAGPVSAAAVIFAPGTRIADVDDSKKLDAATRDRL 120 Query: 121 AKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDI 180 A EIK A +W V F EVEEID INIYWAG+ AM+RAV GL PQH+LIDA+R+K++ I Sbjct: 121 AIEIKATAIAWSVGFAEVEEIDRINIYWAGLLAMRRAVEGLATQPQHVLIDARRIKDLAI 180 Query: 181 PQQAIIKGDTKSASIA 196 PQQ I+KGD KS +IA Sbjct: 181 PQQPIVKGDAKSLTIA 196 >ref|YP_004674669.1| Ribonuclease HII [Hyphomicrobium sp. MC1] emb|CCB64095.1| Ribonuclease HII [Hyphomicrobium sp. MC1] Length = 301 Score = 246 bits (627), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 122/191 (63%), Positives = 150/191 (78%) Query: 6 LDVLRRRYVVEKRPLEASVEQILRADTRAGARAILASIDKRRFENRSEGQRLRKMLRFET 65 L L R+V E RPL+ ++E LR D RAGARAIL++I+KRRF+NRSEGQRLR +LRFET Sbjct: 25 LSELTLRHVREGRPLDKALEAALRRDPRAGARAILSAIEKRRFDNRSEGQRLRNLLRFET 84 Query: 66 SLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREELAKEIK 125 LW +G VAGVDEAGMSPLAGPV A AVI +P TRI G+DDSKKL+A +RE LA EIK Sbjct: 85 DLWSSGVLLVAGVDEAGMSPLAGPVCAAAVIFEPDTRIPGVDDSKKLDAVSRERLAIEIK 144 Query: 126 EKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQAI 185 A +W V + EV EID++NIYWAGI AM+RAV GL P H+L+DA+R+K++ IPQQAI Sbjct: 145 NVAVTWAVGWAEVHEIDSLNIYWAGILAMRRAVEGLAKPPDHILLDARRIKDLAIPQQAI 204 Query: 186 IKGDTKSASIA 196 ++GD KS +IA Sbjct: 205 VRGDCKSLTIA 215 >ref|NP_774320.1| ribonuclease HII [Bradyrhizobium japonicum USDA 110] dbj|BAC52945.1| blr7680 [Bradyrhizobium japonicum USDA 110] Length = 111 Score = 204 bits (519), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 101/107 (94%), Positives = 104/107 (97%) Query: 60 MLRFETSLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLEAAAREE 119 MLRFETSLWE+GH AVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKL+AAAREE Sbjct: 1 MLRFETSLWESGHAAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKKLDAAAREE 60 Query: 120 LAKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQ 166 LAKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGL L P+ Sbjct: 61 LAKEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLRLPPR 107 >ref|ZP_01467629.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] ref|YP_003952918.1| ribonuclease hII [Stigmatella aurantiaca DW4/3-1] gb|EAU61597.1| ribonuclease HII [Stigmatella aurantiaca DW4/3-1] gb|ADO71091.1| Ribonuclease HII [Stigmatella aurantiaca DW4/3-1] Length = 282 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/193 (54%), Positives = 132/193 (68%), Gaps = 1/193 (0%) Query: 5 PLDVLRRRYVVEKRPLEASVEQILRADTRAGARAILASIDKRRFENRSEGQRLRKMLRFE 64 PL L RY+V +P+ + + L AD R GAR + I R+ +NR+EGQRLR +LR+E Sbjct: 11 PLAELTDRYLVRAQPVPSGLLDALEADGRQGARTLARRIRNRQEKNRAEGQRLRHLLRYE 70 Query: 65 TSLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKK-LEAAAREELAKE 123 T LWE G VAGVDEAGM+PLAGPV A A IL R+ G+DDSKK L+A REELA Sbjct: 71 TELWEQGLERVAGVDEAGMAPLAGPVVAAAAILPRNYRLKGLDDSKKILDAERREELAAA 130 Query: 124 IKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIPQQ 183 +K A +W V EVEEID +NIY AG+ AM+RAV GLGLTP + L+DA+++ E PQ+ Sbjct: 131 LKRDAVAWAVGIAEVEEIDRLNIYHAGLLAMRRAVLGLGLTPDYALVDARKIPECPCPQR 190 Query: 184 AIIKGDTKSASIA 196 II+GD S SIA Sbjct: 191 GIIRGDALSMSIA 203 >ref|YP_004667087.1| ribonuclease HII [Myxococcus fulvus HW-1] gb|AEI66009.1| ribonuclease HII [Myxococcus fulvus HW-1] Length = 293 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 108/195 (55%), Positives = 135/195 (69%), Gaps = 1/195 (0%) Query: 3 QYPLDVLRRRYVVEKRPLEASVEQILRADTRAGARAILASIDKRRFENRSEGQRLRKMLR 62 Q L L RYV + P+ A + + L AD RAGA+A+ I R+ +NR+EGQRLR++LR Sbjct: 11 QCALSELTARYVTQANPVPAGLLEALDADPRAGAQALARRIRSRQEKNRAEGQRLRRLLR 70 Query: 63 FETSLWETGHHAVAGVDEAGMSPLAGPVSAGAVILKPGTRIVGIDDSKK-LEAAAREELA 121 +ET LW GH +AGVDEAGM+PLAGPV A A +L G R+ G+DDSKK L+A RE LA Sbjct: 71 YETELWAQGHTHIAGVDEAGMAPLAGPVVAAAAVLPKGFRLKGLDDSKKILDADKREALA 130 Query: 122 KEIKEKAESWCVAFVEVEEIDAINIYWAGIQAMQRAVRGLGLTPQHLLIDAKRLKEIDIP 181 IK +A +W V EVEEID INIY AG+ AM+RAV GL + P HLL+DA+ + E +P Sbjct: 131 VAIKREAVAWAVGRAEVEEIDRINIYHAGLLAMRRAVEGLAVKPDHLLVDARTVPECSVP 190 Query: 182 QQAIIKGDTKSASIA 196 QQ IIKGD S SIA Sbjct: 191 QQGIIKGDALSLSIA 205