BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0200.0004.p (562 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003692479.1| hypothetical protein Snov_0527 [Starkeya nov... 543 e-152 ref|YP_004154607.1| outer membrane autotransporter barrel domain... 44 0.075 ref|ZP_07047269.1| cadherin [Comamonas testosteroni S44] >gi|298... 44 0.11 ref|YP_578284.1| Outer membrane autotransporter barrel [Nitrobac... 42 0.21 ref|YP_673150.1| beta strand repeat-containing protein [Mesorhiz... 42 0.32 >ref|YP_003692479.1| hypothetical protein Snov_0527 [Starkeya novella DSM 506] gb|ADH87860.1| hypothetical protein Snov_0527 [Starkeya novella DSM 506] Length = 830 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 295/560 (52%), Positives = 384/560 (68%), Gaps = 13/560 (2%) Query: 1 MWKDPIKSTPSIIQTDFGPFGQSLPGDGEAYCGPTSMVMGLYWLSANGFTQVAPAVYNGE 60 MWKDP+ +TPSI+QT+FGP+G SLP DGE+YC PTS+VMGLY+L NGFTQ+APA Y G Sbjct: 1 MWKDPVGNTPSIVQTNFGPWGTSLPADGESYCAPTSVVMGLYYLGGNGFTQLAPASYAGP 60 Query: 61 DDPVAINLERVVAGLVRTSSESGSFVDGMTSGMADYLSACGIGPDLYNLTSTSNPDLAWL 120 DD +I ER++AG++ TS G+ G +G+ADY +A G+G D Y ST PD+ WL Sbjct: 61 DDRESILFERLIAGIIGTSPTQGT---GSLAGLADYFAARGLGLDQYTYISTGIPDVQWL 117 Query: 121 ADQLAPN--XSPQTIVLANFAVGWYSVSQ----TTKGYMENYGGHVLAPLTVNLTGGTIT 174 QLAPN PQ I L F+VGW+ + T + N GGH LAPL V+L +T Sbjct: 118 DTQLAPNYVEDPQWISLTVFSVGWFYKPKDDEPTCGCTLCNDGGHTLAPLKVDLFTQKVT 177 Query: 175 INNAFPASFENVPNLPSSNPQTVQIAQMPSGWTLENLPQPSEDYSQVVTDALTGWGVYAV 234 +NNA+P SF +VPN PSSNPQTV++ +P G T+E L P + YS+V+TD L +A+ Sbjct: 178 LNNAYPMSFLDVPNEPSSNPQTVELQLVPEGMTVEGLNDPQQ-YSEVMTDILGSGDDFAI 236 Query: 235 LWQGQAWAISQSALPSTSGYEPSTWTINQPKVINTNGGTLTVVAPISGLGGLHKYGEGTL 294 LW ++W IS SALP+T GY P+TW I+ PK +NTN TLTV+AP++G GG KYGEGTL Sbjct: 237 LWLAESWIISASALPTTPGYAPATWQIDGPKSLNTNEATLTVLAPLAGRGGFVKYGEGTL 296 Query: 295 LLTNTNQLIGHNTVGAGTLASTRTSGTPFGSFRVTVTNGGILELRSDGAT-VDVQIASGS 353 LLTN+N+L+G N V GTLAST T+ TPFG++ V + NGG L L + + V V+IASG Sbjct: 297 LLTNSNRLMGRNEVCNGTLASTLTTDTPFGTWTVVLRNGGALALAPETSDPVAVEIASGH 356 Query: 354 LATFVIGSTGGALQLSGSGNYRVVIGGNDDGTLTNIVRNSGGTLVIVPGGGMAQLGLTQQ 413 LA F++ + GG L+L G+ +Y V +GG DDG L NIV + GTL I PGGG++ LG +Q+ Sbjct: 357 LARFIVDAGGGTLRLDGTNSYSVTLGGCDDGELPNIVLANDGTLAIAPGGGISALGTSQK 416 Query: 414 VFVAGTGANLPIVMNGIVAPYILGEDDDAASSGKFLTYSPSGGFASAATVSSTDVSINDV 473 V V GT NLPIV +GIV P ILG D D SGKF+TY + GF +A+ ST + IN V Sbjct: 417 VLVTGTDGNLPIVTDGIVTPAILGIDTDL--SGKFVTYDVTSGFIAASPTLSTSLGINSV 474 Query: 474 PADAVYEVVDSQAVESGGVPQVAALEVNGGAITGGDASILVGSQASGDAAGLIMNGGSIA 533 VYEVVD Q ++SG PQ+AALE+NGG ++G A +LVG+QA+G AG+IMN GSI Sbjct: 475 TVSTVYEVVDEQVIDSGAAPQLAALELNGGTVSGSGAQLLVGNQAAGGVAGIIMNAGSIG 534 Query: 534 TARLSFGAAEGLIYTNASGG 553 L+ GAA ++Y + S G Sbjct: 535 VDTLTIGAAAAIVYASTSDG 554 >ref|YP_004154607.1| outer membrane autotransporter barrel domain-containing protein [Variovorax paradoxus EPS] gb|ADU36496.1| outer membrane autotransporter barrel domain protein [Variovorax paradoxus EPS] Length = 3696 Score = 43.9 bits (102), Expect = 0.075, Method: Compositional matrix adjust. Identities = 82/292 (28%), Positives = 116/292 (39%), Gaps = 59/292 (20%) Query: 139 AVGWYSVSQTTKGYMENYGGHVLAPLTVNLTGGTITINNAFPASFENVPNLPSSNPQTVQ 198 AV + S +EN GG L L N G I N + + + + + V Sbjct: 1999 AVEFRDTSSAGNAVIENRGG--LTTLWFNAIAGKAQITNFDGGRIDLLDDASAGQARLVN 2056 Query: 199 IAQMPSGWTLENLPQPSEDYSQVVT--------DALTGWGVYAVLWQGQAWAISQSALPS 250 SG + + S D + VV D+LT G+ +G + S + Sbjct: 2057 ----ESGGAISFSDRTSADQATVVNNAGAQLRIDSLTNAGLSIGSLEGAGNVLLGSKALT 2112 Query: 251 TSGYEPSTWTINQPKVINTNGGTLTVVAPISGLGG-LHKYGEGTLLLTNTNQLIGHNTVG 309 T G ST TV ISG GG + K G GTL L+ N G TV Sbjct: 2113 TGGLNTST----------------TVSGAISGNGGSVVKVGSGTLTLSGANAYTGGTTVA 2156 Query: 310 AGTLASTRTSGTPFGS------------------FRVTVTNGGILELRSDGA----TVDV 347 AGTLA+ TSG+ G+ VT+ GGIL + GA T + Sbjct: 2157 AGTLAANNTSGSATGTGAVQVQGGATLAGTGAVAGTVTIAKGGILSAGNGGAGTLTTGSL 2216 Query: 348 QIASGSLATFVIGSTGGALQLSGSGNYRVVIGGN--DDGTLTNIVRNSGGTL 397 +A+G++ + +G G A G+ N V + GN DGTL N+ ++ GG Sbjct: 2217 NLAAGAVLDYDLGQAGTA---GGALNDLVKVNGNLQLDGTL-NVAQSKGGVF 2264 >ref|ZP_07047269.1| cadherin [Comamonas testosteroni S44] gb|EFI59090.1| cadherin [Comamonas testosteroni S44] Length = 2624 Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust. Identities = 30/62 (48%), Positives = 35/62 (56%) Query: 280 ISGLGGLHKYGEGTLLLTNTNQLIGHNTVGAGTLASTRTSGTPFGSFRVTVTNGGILELR 339 ISG GGL K G GTL L+ +N G TV AG L SGT S VTV+ G +L L Sbjct: 1192 ISGTGGLTKSGSGTLTLSGSNAYTGATTVSAGGLTLNGASGTLDDSTSVTVSTGAMLTLG 1251 Query: 340 SD 341 +D Sbjct: 1252 AD 1253 >ref|YP_578284.1| Outer membrane autotransporter barrel [Nitrobacter hamburgensis X14] gb|ABE63824.1| Outer membrane autotransporter barrel [Nitrobacter hamburgensis X14] Length = 2407 Score = 42.4 bits (98), Expect = 0.21, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 70/157 (44%), Gaps = 30/157 (19%) Query: 262 NQPKVINTNGGTLTVVAPISGLGG-LHKYGEGTLLLTNTNQLIGHNTVGAGTLASTRTSG 320 NQ I+TNG T+T + ++ GG L K G GTL+L N G V AGTL +T Sbjct: 1623 NQAYSIDTNGQTVTYASALASAGGSLTKLGTGTLILAAANTYTGATNVNAGTLTTT---- 1678 Query: 321 TPFGSFRVTVTNGGILELRSDGATVDVQIASGSLATFVIGST-----------GGALQLS 369 GS VTN + ++G + I + S TF +G T G L + Sbjct: 1679 ---GSIMGGVTNS--ATVNANGGAIAGAIVNNSGGTFNVGGTFFGNSTFSNASGATLAIG 1733 Query: 370 GSGNYRVVIGGNDDGTLTN---IVRNSGGTLVIVPGG 403 GSG Y + G LTN + SGGTL GG Sbjct: 1734 GSGAYTL------QGLLTNSGAMNVASGGTLDATTGG 1764 >ref|YP_673150.1| beta strand repeat-containing protein [Mesorhizobium sp. BNC1] gb|ABG61985.1| autotransporter-associated beta strand repeat protein [Chelativorans sp. BNC1] Length = 852 Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 54/107 (50%) Query: 267 INTNGGTLTVVAPISGLGGLHKYGEGTLLLTNTNQLIGHNTVGAGTLASTRTSGTPFGSF 326 I+T GT T+ + ++G GL K G GTL LT TN G T+ GTL ++ + S Sbjct: 156 IDTGTGTQTINSVVAGSAGLTKTGTGTLSLTGTNTFSGGITLSGGTLQASGNAALGAASN 215 Query: 327 RVTVTNGGILELRSDGATVDVQIASGSLATFVIGSTGGALQLSGSGN 373 +T T IL + S V + +G V G+ G+ + +GSGN Sbjct: 216 TITTTANAILNVESGSMEDRVVLIAGGTTLSVQGNGVGSAKFTGSGN 262