BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0199.0001.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizo...   157   6e-37
ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodo...   138   3e-31
ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitro...   136   9e-31
ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase...   135   3e-30
ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase...   131   4e-29

>ref|NP_771796.1| D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC50421.1| blr5156 [Bradyrhizobium japonicum USDA 110]
          Length = 611

 Score =  157 bits (397), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 77/107 (71%), Positives = 91/107 (85%), Gaps = 4/107 (3%)

Query: 1   VASIEPATRSVQAAPPTSSARPSAAHTGWIIQVGALESEGEANKRIDLARSSARGLLSKA 60
           +AS +PA +++Q    +++ +P   H+GWI+QVGALESE EA +RID ARSSARGLLSKA
Sbjct: 508 LASADPAPQAIQM---SATTKPVVTHSGWIVQVGALESENEAQQRIDAARSSARGLLSKA 564

Query: 61  DPFTE-VVAKDNRKLYRARFAGLERDQAEAACKTLKRAEISCITVRN 106
           DPFTE VVAKDNRKLYRARFAGLERDQAEA C+ LKRA+ISCITVRN
Sbjct: 565 DPFTEPVVAKDNRKLYRARFAGLERDQAEAVCRALKRADISCITVRN 611


>ref|YP_782319.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
 gb|ABJ07339.1| Serine-type D-Ala-D-Ala carboxypeptidase [Rhodopseudomonas
           palustris BisA53]
          Length = 584

 Score =  138 bits (347), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/81 (74%), Positives = 73/81 (90%)

Query: 26  HTGWIIQVGALESEGEANKRIDLARSSARGLLSKADPFTEVVAKDNRKLYRARFAGLERD 85
           HTGWI+QVGALESE +A  R+DLAR+ ARGLL KADPFTE VAK ++KLYRARFAGL+RD
Sbjct: 504 HTGWIVQVGALESESDARSRLDLARNRARGLLGKADPFTEAVAKGDKKLYRARFAGLDRD 563

Query: 86  QAEAACKTLKRAEISCITVRN 106
           QAEAACKTL+R+++ CIT++N
Sbjct: 564 QAEAACKTLRRSDLPCITIKN 584


>ref|YP_577670.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
 gb|ABE63210.1| Serine-type D-Ala-D-Ala carboxypeptidase [Nitrobacter hamburgensis
           X14]
          Length = 586

 Score =  136 bits (343), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 78/95 (82%)

Query: 12  QAAPPTSSARPSAAHTGWIIQVGALESEGEANKRIDLARSSARGLLSKADPFTEVVAKDN 71
           QA     + +P A+H+GWIIQVGALE+E EA +R+D AR  ARG+L KADPFTE VAK N
Sbjct: 492 QAVQHNGAVKPVASHSGWIIQVGALETEREARERLDAARGRARGMLGKADPFTETVAKGN 551

Query: 72  RKLYRARFAGLERDQAEAACKTLKRAEISCITVRN 106
           +KLYRARFAGL+R +AEA C+TLKR+++SCIT++N
Sbjct: 552 KKLYRARFAGLDRSEAEAVCRTLKRSDMSCITIKN 586


>ref|YP_001240708.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ36802.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. BTAi1]
          Length = 590

 Score =  135 bits (339), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 76/91 (83%)

Query: 16  PTSSARPSAAHTGWIIQVGALESEGEANKRIDLARSSARGLLSKADPFTEVVAKDNRKLY 75
           P   ++P+   +GWIIQVGAL++E EA KRI+ ARSSA+GLLSKADPFTE VAK ++KL 
Sbjct: 500 PEPISKPTVTRSGWIIQVGALDTEAEAQKRIEAARSSAQGLLSKADPFTETVAKGDKKLI 559

Query: 76  RARFAGLERDQAEAACKTLKRAEISCITVRN 106
           RARFAGL+RDQAEA CK LKRA+ISC+T+ N
Sbjct: 560 RARFAGLDRDQAEAVCKKLKRADISCMTMHN 590


>ref|YP_001206505.1| putative D-alanyl-D-alanine carboxypeptidase [Bradyrhizobium sp.
           ORS 278]
 emb|CAL78285.1| putative D-alanyl-D-alanine carboxypeptidase (Peptidase
           S11)(DD-carboxypeptidase) [Bradyrhizobium sp. ORS 278]
          Length = 586

 Score =  131 bits (329), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 61/80 (76%), Positives = 70/80 (87%)

Query: 27  TGWIIQVGALESEGEANKRIDLARSSARGLLSKADPFTEVVAKDNRKLYRARFAGLERDQ 86
           +GWIIQVGAL+SE EA KRID ARSSA+GLLSKADPFTE V+K ++ L RARFAGL+RDQ
Sbjct: 507 SGWIIQVGALDSEAEAQKRIDAARSSAQGLLSKADPFTETVSKGDKTLIRARFAGLDRDQ 566

Query: 87  AEAACKTLKRAEISCITVRN 106
           AEA CK LKRA+ISC+TV N
Sbjct: 567 AEAVCKKLKRADISCMTVHN 586