BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0198.0011.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768530.1| ABC transporter permease protein [Bradyrhizobiu... 479 e-133 ref|YP_001863460.1| binding-protein-dependent transport systems ... 411 e-113 ref|YP_003989841.1| binding-protein-dependent transporters inner... 214 2e-53 ref|ZP_01129248.1| ABC transporter permease protein [marine acti... 209 3e-52 ref|NP_107620.1| ABC transporter, permease protein [Mesorhizobiu... 204 1e-50 >ref|NP_768530.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] gb|AAG60869.1|AF322012_174 ID399 [Bradyrhizobium japonicum] dbj|BAC47155.1| ABC transporter permease protein [Bradyrhizobium japonicum USDA 110] Length = 320 Score = 479 bits (1233), Expect = e-133, Method: Compositional matrix adjust. Identities = 256/311 (82%), Positives = 276/311 (88%) Query: 1 VTLQSSTSQLASPKDKAITSARYSRLDWWSIAAIAPAIIVLLGFFFLFLYGVFQSLTDLK 60 V LQSS QLA PK + + SA LDWWS+AAIAPAII+LLGF FLF YGVFQSLTDLK Sbjct: 10 VMLQSSVGQLAPPKKEQVQSAGQHALDWWSLAAIAPAIIILLGFLFLFFYGVFQSLTDLK 69 Query: 61 FGRAVVHFIGIDNYASLIKTGEFWSSIHATLVYAGSGVLAEAVFGLAIAKLFATEVILAR 120 FGR +V FIG+ NY IKT +FW+S+ AT VYA S VLAEA GLA+AKLFA+ V LA+ Sbjct: 70 FGRPLVRFIGVTNYEVAIKTQDFWNSMRATTVYACSAVLAEAFSGLALAKLFASRVFLAQ 129 Query: 121 AMRPVILLPLVLPPMSVALMWTTMMDPQNGIMNYLLSLVGIGRFAWISDSKTAMFSLVLI 180 MRPVILLPLVLPPMSVALMWTTMMDPQNGI+NYLLSLVGIGRFAWISD+ TAMFSLVLI Sbjct: 130 LMRPVILLPLVLPPMSVALMWTTMMDPQNGILNYLLSLVGIGRFAWISDAGTAMFSLVLI 189 Query: 181 DVWTYTPFFALIISAGLQGINEEIREAARVNGAKGWATFLHIELPLIAPYILIAAVFRLI 240 D+WTYTPFFALII AGLQGINEEIREAAR+NGAKGWATFLHIELPLIAPYILIAAVFRLI Sbjct: 190 DIWTYTPFFALIIFAGLQGINEEIREAARINGAKGWATFLHIELPLIAPYILIAAVFRLI 249 Query: 241 ESLNQFDIIFGTTQGGPGNSTSVLSVRAYIAAFQNLAFGRGAALMVVNWMIVLIGAFAMV 300 ESLNQFDIIFGTTQGGPG+STSVLSVRAYI AFQNLAFGRGAALMVVNW+IVL+G AMV Sbjct: 250 ESLNQFDIIFGTTQGGPGDSTSVLSVRAYITAFQNLAFGRGAALMVVNWLIVLLGTLAMV 309 Query: 301 RLWRFVRQRVS 311 +LWR VRQRVS Sbjct: 310 KLWRLVRQRVS 320 >ref|YP_001863460.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC76410.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 316 Score = 411 bits (1057), Expect = e-113, Method: Compositional matrix adjust. Identities = 197/298 (66%), Positives = 250/298 (83%), Gaps = 1/298 (0%) Query: 14 KDKAITSARYSRLDWWSIAAIAPAIIVLLGFFFLFLYGVFQSLTDLKFGRAVVHFIGIDN 73 ++ A + R S DW+S+ A++PAII+L+ F FLF YGV+QSLT+L+FG V+HF+G+ N Sbjct: 20 REPAEPAGRRSA-DWFSLVAVSPAIIILVAFLFLFFYGVYQSLTNLRFGVPVMHFVGLRN 78 Query: 74 YASLIKTGEFWSSIHATLVYAGSGVLAEAVFGLAIAKLFATEVILARAMRPVILLPLVLP 133 YA LI++ +FW+++ TL YA + V EAV GLAIA+LFA+EV+LAR +RP++LLPLVLP Sbjct: 79 YALLIQSADFWNNLRVTLTYAFACVSLEAVIGLAIARLFASEVLLARVLRPMVLLPLVLP 138 Query: 134 PMSVALMWTTMMDPQNGIMNYLLSLVGIGRFAWISDSKTAMFSLVLIDVWTYTPFFALII 193 PMSVALMWTTMM+PQ GI+NYLLSL+G+G FAWIS +A+ S+VLIDVWT+TPFF LII Sbjct: 139 PMSVALMWTTMMNPQAGILNYLLSLMGLGPFAWISSESSALASVVLIDVWTFTPFFTLII 198 Query: 194 SAGLQGINEEIREAARVNGAKGWATFLHIELPLIAPYILIAAVFRLIESLNQFDIIFGTT 253 AGLQGI ++IREAAR+NGAK W+ F IELPL+APYIL+AA+FRLIESL QFDIIFGTT Sbjct: 199 FAGLQGITDDIREAARINGAKAWSIFYRIELPLVAPYILVAALFRLIESLTQFDIIFGTT 258 Query: 254 QGGPGNSTSVLSVRAYIAAFQNLAFGRGAALMVVNWMIVLIGAFAMVRLWRFVRQRVS 311 QGGPG+ST+ LSV+AYI AFQ++ FGRGAALMVVNW++VL A + +LWR VR+RVS Sbjct: 259 QGGPGDSTAALSVQAYITAFQDMNFGRGAALMVVNWLVVLASAMLLAKLWRAVRRRVS 316 >ref|YP_003989841.1| binding-protein-dependent transporters inner membrane component [Geobacillus sp. Y4.1MC1] gb|ADP75230.1| binding-protein-dependent transport systems inner membrane component [Geobacillus sp. Y4.1MC1] Length = 317 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 181/309 (58%), Gaps = 4/309 (1%) Query: 3 LQSSTSQLASPKDKAITSARYSRLDWWSIAAIAPAIIVLLGFFFLFLYGVFQSLTDLKFG 62 +Q+ ++ L S ++ I R R ++PA ++ +G F ++ S T+ F Sbjct: 11 VQADSTTLLSNEEIKIPFLRKMR----PYIILSPAFLLTIGILIPFGMAIYYSFTNFSFK 66 Query: 63 RAVVHFIGIDNYASLIKTGEFWSSIHATLVYAGSGVLAEAVFGLAIAKLFATEVILARAM 122 AV ++IG++NY S+ K EFW S+ T++YAG + E V G+ IA L E ++A+++ Sbjct: 67 YAVYNWIGLENYISMFKDPEFWHSVKVTIMYAGLATVIETVLGVIIALLLNRESVIAKSL 126 Query: 123 RPVILLPLVLPPMSVALMWTTMMDPQNGIMNYLLSLVGIGRFAWISDSKTAMFSLVLIDV 182 R V++ PLV+ P+ L+W M + GI++ L +VG+ F W +D KTA+F++++ID Sbjct: 127 RIVLIFPLVIAPVIATLIWQLMTNNSVGILSKWLRMVGVDNFTWGADPKTALFTVLVIDA 186 Query: 183 WTYTPFFALIISAGLQGINEEIREAARVNGAKGWATFLHIELPLIAPYILIAAVFRLIES 242 W +TPF L++ AGL+ + + E+A ++G W TF ++ LP+I P +LIA +FRL+ S Sbjct: 187 WVFTPFVILLVLAGLRSLPKAPFESAMIDGGSAWFTFKNLTLPMIMPMLLIAVLFRLMAS 246 Query: 243 LNQFDIIFGTTQGGPGNSTSVLSVRAYIAAFQNLAFGRGAALMVVNWMIVLIGAFAMVRL 302 L FDIIF T+GGPGN+ L + AY AF G M++ W V + + MV+ Sbjct: 247 LQMFDIIFALTRGGPGNTLMTLPLTAYTEAFTYKELGYSLPYMLILWAFVYLISHYMVKY 306 Query: 303 WRFVRQRVS 311 W +++ S Sbjct: 307 WSHTQKKAS 315 >ref|ZP_01129248.1| ABC transporter permease protein [marine actinobacterium PHSC20C1] gb|EAR26244.1| ABC transporter permease protein [marine actinobacterium PHSC20C1] Length = 280 Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 117/269 (43%), Positives = 169/269 (62%) Query: 36 PAIIVLLGFFFLFLYGVFQSLTDLKFGRAVVHFIGIDNYASLIKTGEFWSSIHATLVYAG 95 PA+++++G FL GV +S T+ K FIG DNY SL F + + T++Y Sbjct: 5 PALLLVIGIMIPFLQGVARSFTNEKGYVPNPTFIGFDNYISLFTNSTFLTGLGVTILYVV 64 Query: 96 SGVLAEAVFGLAIAKLFATEVILARAMRPVILLPLVLPPMSVALMWTTMMDPQNGIMNYL 155 + + LAIA L + R R I+LPL++PP+ LMW TMM P G++NYL Sbjct: 65 LILAIQLPLALAIALLLEKASPVRRIGRNFIVLPLLIPPIVAGLMWKTMMQPSAGVLNYL 124 Query: 156 LSLVGIGRFAWISDSKTAMFSLVLIDVWTYTPFFALIISAGLQGINEEIREAARVNGAKG 215 + LVGI W++D TA+ S+VLID W +T F ALII AGLQ + E +REAA ++GA Sbjct: 125 MELVGIPGSTWLTDPATALISVVLIDTWAFTSFSALIILAGLQALPESLREAASIDGAGW 184 Query: 216 WATFLHIELPLIAPYILIAAVFRLIESLNQFDIIFGTTQGGPGNSTSVLSVRAYIAAFQN 275 W+TF HI LP +APYI++ A+FR+ +SL QFD+I+ T+GGP NST +L V+ Y AF+ Sbjct: 185 WSTFRHIALPWLAPYIVLVALFRVADSLKQFDLIWPVTRGGPLNSTRLLHVQGYEEAFRF 244 Query: 276 LAFGRGAALMVVNWMIVLIGAFAMVRLWR 304 + A++ V W+I+ + +F ++RLWR Sbjct: 245 SSPAMAMAIIFVLWLIIYLSSFLLLRLWR 273 >ref|NP_107620.1| ABC transporter, permease protein [Mesorhizobium loti MAFF303099] dbj|BAB53406.1| ABC transporter, permease protein [Mesorhizobium loti MAFF303099] Length = 307 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/275 (38%), Positives = 163/275 (59%), Gaps = 1/275 (0%) Query: 36 PAIIVLLGFFFLFLYGVFQSLTDLKFGRA-VVHFIGIDNYASLIKTGEFWSSIHATLVYA 94 PA++V +G FL V S + + F DNY S +FW+++ +L+YA Sbjct: 28 PALLVCIGILIPFLTSVVYSFQRYRLSQPWARQFNWGDNYISFFTDPKFWNTLKVSLLYA 87 Query: 95 GSGVLAEAVFGLAIAKLFATEVILARAMRPVILLPLVLPPMSVALMWTTMMDPQNGIMNY 154 G+ V+ E + GLAIA L L + ++L+PL+ P ALMW M +P G+++Y Sbjct: 88 GTTVVLELLLGLAIAMLLQKRSTLNNFISIMLLMPLMTAPALAALMWKLMTNPGFGVLSY 147 Query: 155 LLSLVGIGRFAWISDSKTAMFSLVLIDVWTYTPFFALIISAGLQGINEEIREAARVNGAK 214 L SL+G+ F W S TA+F++VL+D+W YTPF +++ AGL+ + + EAA ++G Sbjct: 148 LASLIGLQDFRWASSPSTALFTVVLVDIWVYTPFIMILLLAGLRSLPTQPFEAAALDGVP 207 Query: 215 GWATFLHIELPLIAPYILIAAVFRLIESLNQFDIIFGTTQGGPGNSTSVLSVRAYIAAFQ 274 F I LP++ PYIL A +FRL++S+ QFDII+ TQGGPG++ +V V AY+ FQ Sbjct: 208 RSFVFFRITLPMLTPYILTATLFRLLDSIQQFDIIYAMTQGGPGDTLTVFQVEAYLNFFQ 267 Query: 275 NLAFGRGAALMVVNWMIVLIGAFAMVRLWRFVRQR 309 + GR AALM++ W I + ++ W +R+R Sbjct: 268 STNVGRSAALMIILWAITYFLSNIFIKNWLRLRER 302